Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/1735c20debd3c1cff974f5c0e74980/659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/b9cca3edce0a6e02ff18c2cd447583/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/ac5fa0604f5965c14eced2773443f2/659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/b9cca3edce0a6e02ff18c2cd447583/.command.run
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (7168701) splicing reads. 183414 splicing junctions. 155432 known splicing junctions. 27982 novel splicing junctions.
sampling 10% (14337402) splicing reads. 200013 splicing junctions. 162712 known splicing junctions. 37301 novel splicing junctions.
sampling 15% (21506103) splicing reads. 207724 splicing junctions. 165547 known splicing junctions. 42177 novel splicing junctions.
sampling 20% (28674804) splicing reads. 212430 splicing junctions. 167020 known splicing junctions. 45410 novel splicing junctions.
sampling 25% (35843505) splicing reads. 215650 splicing junctions. 168007 known splicing junctions. 47643 novel splicing junctions.
sampling 30% (43012206) splicing reads. 218110 splicing junctions. 168702 known splicing junctions. 49408 novel splicing junctions.
sampling 35% (50180908) splicing reads. 219962 splicing junctions. 169185 known splicing junctions. 50777 novel splicing junctions.
sampling 40% (57349609) splicing reads. 221537 splicing junctions. 169575 known splicing junctions. 51962 novel splicing junctions.
sampling 45% (64518310) splicing reads. 222815 splicing junctions. 169880 known splicing junctions. 52935 novel splicing junctions.
sampling 50% (71687011) splicing reads. 223892 splicing junctions. 170149 known splicing junctions. 53743 novel splicing junctions.
sampling 55% (78855712) splicing reads. 224841 splicing junctions. 170332 known splicing junctions. 54509 novel splicing junctions.
sampling 60% (86024413) splicing reads. 225633 splicing junctions. 170505 known splicing junctions. 55128 novel splicing junctions.
sampling 65% (93193114) splicing reads. 226221 splicing junctions. 170621 known splicing junctions. 55600 novel splicing junctions.
sampling 70% (100361816) splicing reads. 226813 splicing junctions. 170754 known splicing junctions. 56059 novel splicing junctions.
sampling 75% (107530517) splicing reads. 227307 splicing junctions. 170839 known splicing junctions. 56468 novel splicing junctions.
sampling 80% (114699218) splicing reads. 227701 splicing junctions. 170923 known splicing junctions. 56778 novel splicing junctions.
sampling 85% (121867919) splicing reads. 228032 splicing junctions. 170986 known splicing junctions. 57046 novel splicing junctions.
sampling 90% (129036620) splicing reads. 228295 splicing junctions. 171038 known splicing junctions. 57257 novel splicing junctions.
sampling 95% (136205321) splicing reads. 228449 splicing junctions. 171070 known splicing junctions. 57379 novel splicing junctions.
sampling 100% (143374023) splicing reads. 228533 splicing junctions. 171090 known splicing junctions. 57443 novel splicing junctions.
null device 
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