File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/66a032594f5294ef41739651f0c83c/.command.log
Size
346.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:MULTIQC
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/1317de6ba46546700c3271d81ba7e5/659_1q-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/30ab9ed1a69fe5dfbf49562f8a4c6d/659_dES-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/8b1fc4a006edfa14d0a13d2a0d0e96/659_On-T1-TRNA-2_B23MHV2LT4_1.Log.final.out
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/8395705a7d3dd2b26e1f97feddb439/659_cRB-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/b268603ed6368df008bf95daece39d/659_bTo-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/c79483aad514220fa942f31888bf0b/659_Wm-T1-TRNA-1_B23MHV2LT4_1.Log.final.out
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/01f4a021e2491a3d381806954a7dc2/659_Fr-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/9888f14325e61c40dbfdf36bf8856a/659_b6o-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/e2c5c629e66a7de1eb5491ba5fdf95/659_cRB-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/4a82afdcefb38114b293467649801b/659_d01-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/755a65efc28af46ff6fe4a3f59bef5/659_ecd-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/92e248d889f5c4dec143969e9ff5b7/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.md.bam.metrics
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/40628e33e38b40fd0b17ea25fca9f8/659_cAa-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/c37fb173cca0b24391583187d0b3ab/659_bGc-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/e5ab6bd9c2e559b5089d5a2667afed/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.fastp.html
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==> STAGING COMPLETE (2387 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.D1JWxHOT6g
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 2422/2422  
|    custom_content | rna_contamination: Found 96 General Statistics columns
|    custom_content | rseqc_extra_metrics: Found 96 General Statistics columns
|    custom_content | kallisto_qc_metrics: Found 96 General Statistics columns
|    custom_content | seqtools_metrics: Found 96 General Statistics columns
|    custom_content | preseq_metrics: Found 96 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|          kallisto | Found 96 reports
|            picard | Found 96 MarkDuplicates reports
|            preseq | Found 96 reports
|             rseqc | Found 96 read_distribution reports
|             rseqc | Found 96 inner_distance reports
|             rseqc | Found 96 read_duplication reports
|             rseqc | Found 96 junction_annotation reports
|             rseqc | Found 96 junction_saturation reports
|             rseqc | Found 96 infer_experiment reports
|             rseqc | Found 96 bam_stat reports
|              star | Found 96 reports and 96 gene count files
|             fastp | Found 96 reports
|            fastqc | Found 384 reports
|            fastqc | Found 192 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete