Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/8728af48670eaa3f395b9b8d216a1c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/8728af48670eaa3f395b9b8d216a1c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/e955bb1eb3f36201ab882905d78ea6/659_b4x-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/38f613398bb98d0c78bf28614199fa/659_b4x-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 50542863
[W::hts_idx_load3] The index file is older than the data file: 659_b4x-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	50542863
Known Splicing Events:	49967497
Partial Novel Splicing Events:	350462
Novel Splicing Events:	201848
Filtered Splicing Events:	23056

Total splicing  Junctions:	183345
Known Splicing Junctions:	157728
Partial Novel Splicing Junctions:	16066
Novel Splicing Junctions:	9551

===================================================================
Create BED file ...
Create Interact file ...