Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/2a5c73bbe05382f282f89a9d3e3f62/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/4d7c4a8f06a27d6b3d3b7d39ecf078/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/4d7c4a8f06a27d6b3d3b7d39ecf078/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 293152234
unpaired = 4660025
MERGED PAIRED END READS = 293152234
MATES PROCESSED = 590964493
TOTAL READS     = 297812259
DISTINCT READS  = 1.61628e+08
DISTINCT COUNTS = 1209
MAX COUNT       = 953933
COUNTS OF 1     = 1.03839e+08
MAX TERMS       = 100
OBSERVED COUNTS (953934)
1	103838759
2	33348443
3	12130651
4	5094344
5	2466951
6	1355325
7	824076
8	542263
9	378630
10	275270
11	209065
12	162127
13	129287
14	103961
15	86041
16	71246
17	60648
18	51474
19	43998
20	38472
21	33637
22	29351
23	26063
24	23178
25	20294
26	18567
27	16822
28	14971
29	13538
30	12368
31	11380
32	10472
33	9565
34	8951
35	8084
36	7456
37	6922
38	6556
39	6043
40	5751
41	5307
42	4878
43	4678
44	4406
45	4041
46	3925
47	3733
48	3516
49	3269
50	3068
51	2921
52	2654
53	2639
54	2569
55	2362
56	2155
57	2261
58	2096
59	1957
60	1864
61	1799
62	1671
63	1625
64	1453
65	1469
66	1426
67	1369
68	1260
69	1236
70	1246
71	1176
72	1162
73	1131
74	1003
75	1023
76	982
77	967
78	873
79	840
80	813
81	824
82	730
83	799
84	766
85	728
86	690
87	675
88	651
89	614
90	596
91	597
92	607
93	560
94	559
95	486
96	556
97	515
98	517
99	442
100	457
101	443
102	445
103	418
104	443
105	398
106	377
107	399
108	375
109	381
110	363
111	352
112	380
113	277
114	334
115	329
116	326
117	297
118	302
119	294
120	300
121	263
122	270
123	247
124	270
125	258
126	253
127	228
128	215
129	213
130	224
131	206
132	219
133	209
134	221
135	207
136	207
137	216
138	177
139	202
140	215
141	183
142	161
143	174
144	174
145	153
146	150
147	150
148	175
149	181
150	135
151	154
152	147
153	144
154	139
155	133
156	140
157	110
158	120
159	127
160	132
161	109
162	101
163	118
164	109
165	134
166	116
167	113
168	109
169	82
170	96
171	95
172	101
173	106
174	92
175	87
176	92
177	94
178	93
179	95
180	96
181	85
182	95
183	79
184	89
185	97
186	74
187	90
188	82
189	85
190	70
191	74
192	91
193	90
194	74
195	74
196	70
197	71
198	91
199	72
200	67
201	67
202	55
203	82
204	60
205	70
206	63
207	57
208	61
209	61
210	60
211	41
212	53
213	59
214	50
215	74
216	54
217	47
218	55
219	60
220	55
221	51
222	69
223	48
224	53
225	56
226	56
227	53
228	44
229	46
230	42
231	43
232	52
233	44
234	42
235	39
236	38
237	38
238	49
239	37
240	41
241	50
242	53
243	37
244	48
245	41
246	24
247	32
248	45
249	48
250	45
251	30
252	34
253	34
254	35
255	33
256	26
257	45
258	38
259	28
260	23
261	32
262	29
263	27
264	37
265	34
266	27
267	37
268	32
269	37
270	25
271	28
272	19
273	26
274	19
275	31
276	30
277	25
278	14
279	24
280	23
281	26
282	32
283	19
284	23
285	16
286	22
287	30
288	33
289	23
290	23
291	29
292	34
293	18
294	26
295	24
296	20
297	20
298	21
299	19
300	25
301	15
302	30
303	20
304	24
305	28
306	21
307	21
308	21
309	24
310	20
311	15
312	23
313	21
314	22
315	18
316	10
317	16
318	11
319	14
320	21
321	15
322	20
323	15
324	13
325	17
326	22
327	14
328	16
329	18
330	24
331	7
332	19
333	14
334	19
335	17
336	18
337	16
338	14
339	11
340	14
341	23
342	21
343	21
344	10
345	21
346	17
347	16
348	16
349	14
350	11
351	15
352	15
353	14
354	16
355	16
356	13
357	21
358	19
359	14
360	13
361	17
362	12
363	11
364	18
365	18
366	20
367	6
368	11
369	7
370	10
371	11
372	13
373	11
374	7
375	10
376	11
377	13
378	14
379	15
380	9
381	9
382	9
383	9
384	7
385	11
386	22
387	14
388	14
389	4
390	13
391	10
392	13
393	15
394	6
395	13
396	12
397	6
398	13
399	3
400	14
401	11
402	9
403	11
404	9
405	11
406	15
407	11
408	9
409	6
410	7
411	3
412	3
413	9
414	11
415	8
416	12
417	11
418	10
419	14
420	9
421	11
422	9
423	7
424	7
425	10
426	12
427	15
428	8
429	9
430	10
431	8
432	9
433	10
434	15
435	9
436	5
437	5
438	10
439	9
440	9
441	5
442	7
443	9
444	5
445	10
446	10
447	7
448	7
449	8
450	4
451	8
452	11
453	4
454	10
455	9
456	7
457	7
458	6
459	9
460	7
461	2
462	5
463	8
464	8
465	3
466	11
467	8
468	4
469	4
470	9
471	5
472	6
473	1
474	7
475	7
476	4
477	7
478	3
479	3
480	10
481	7
482	4
483	7
484	7
485	6
486	5
487	3
488	6
489	8
490	2
491	5
492	3
493	8
494	5
495	6
496	6
497	6
498	7
499	5
500	5
501	5
502	8
503	2
504	2
505	3
506	7
507	5
508	5
509	5
510	2
511	6
512	4
513	7
514	4
515	2
516	3
517	6
518	11
519	3
520	2
521	5
522	3
523	3
524	4
525	5
526	6
527	2
528	8
529	6
530	6
531	6
532	4
533	3
534	3
535	5
536	1
537	5
538	6
539	6
540	4
541	3
542	4
543	7
544	6
545	5
546	6
547	2
548	1
549	7
550	9
551	3
552	5
553	3
554	3
555	4
556	2
557	3
558	3
559	2
560	1
561	1
562	7
563	6
564	3
565	3
566	4
567	1
568	1
569	3
570	4
571	2
572	2
573	3
574	3
575	6
576	8
577	1
578	3
579	6
580	3
582	5
583	3
584	4
585	2
586	4
587	2
588	5
589	4
590	3
591	4
592	3
593	4
594	6
595	3
596	4
597	2
598	5
599	1
600	3
601	2
602	2
603	5
604	4
605	4
606	6
607	5
608	3
609	3
610	3
611	4
612	5
613	5
614	3
615	4
616	2
617	2
618	3
619	2
620	2
621	3
622	3
623	1
624	2
625	2
626	6
630	1
631	5
632	3
633	3
634	1
635	2
636	3
637	3
638	5
639	1
640	4
641	6
642	1
643	5
644	4
645	2
646	3
648	2
649	3
650	2
651	2
652	2
653	1
654	2
655	4
656	3
657	1
658	3
659	2
660	2
661	2
662	4
664	3
665	1
667	3
668	2
669	3
670	4
671	3
672	3
673	2
674	1
675	1
676	1
677	3
678	2
680	3
682	3
683	2
684	2
685	1
686	1
687	2
688	2
689	1
691	2
692	3
694	3
695	4
696	3
697	4
698	3
699	1
700	1
701	4
702	1
703	1
704	3
706	1
707	3
708	2
709	1
711	4
712	1
713	2
714	1
715	3
717	2
718	1
720	1
721	4
722	1
723	3
724	2
727	1
728	1
729	2
730	2
731	3
732	1
733	3
734	2
735	1
736	1
737	3
739	1
740	2
741	1
742	2
743	1
744	1
745	1
746	2
747	2
748	4
749	2
750	1
751	2
752	3
753	2
755	2
756	1
757	3
758	2
759	1
761	1
762	5
763	2
764	3
765	3
767	2
768	2
770	2
771	3
772	2
773	1
774	3
777	1
778	2
781	1
782	1
783	2
785	5
786	2
787	4
788	1
789	2
791	1
792	1
793	1
795	2
796	2
797	1
798	2
799	1
800	2
802	1
804	3
805	1
806	2
808	1
809	1
811	2
816	1
818	1
820	2
821	1
822	2
824	2
825	3
827	2
828	3
829	2
830	3
834	2
836	2
837	1
838	2
839	1
840	1
841	1
842	1
843	2
844	1
845	3
847	1
848	3
849	1
850	1
852	3
853	3
854	2
855	1
856	2
858	1
859	1
860	1
862	1
865	1
867	1
868	1
870	2
872	2
875	1
876	1
881	3
882	1
883	1
885	1
887	2
888	3
889	3
890	2
891	1
892	1
893	1
894	2
895	3
897	1
901	2
904	3
905	2
906	1
907	1
910	1
911	1
912	1
914	2
916	1
919	2
920	1
923	2
924	1
925	2
926	1
927	1
929	1
930	1
931	2
934	1
935	1
936	1
938	1
940	1
941	1
944	1
945	1
946	1
947	1
948	3
949	1
950	1
952	1
953	1
954	1
955	2
956	3
960	2
961	1
964	1
965	2
966	2
969	1
970	3
971	1
973	1
975	1
981	2
982	1
983	1
986	1
987	2
990	1
992	1
993	1
994	1
998	1
999	1
1004	1
1005	1
1011	1
1012	1
1014	2
1016	1
1017	1
1020	1
1022	2
1023	1
1024	1
1025	1
1029	1
1030	1
1032	1
1034	2
1035	1
1038	1
1039	1
1040	2
1042	2
1048	1
1049	1
1050	2
1059	1
1060	1
1061	1
1063	1
1066	1
1075	2
1077	2
1081	2
1082	2
1083	2
1085	1
1086	1
1087	1
1088	1
1089	2
1092	1
1093	2
1095	1
1099	1
1100	1
1101	1
1104	2
1111	1
1114	1
1116	1
1123	1
1127	2
1128	1
1129	1
1130	1
1133	1
1134	4
1136	1
1138	1
1139	2
1140	1
1147	1
1148	1
1149	1
1150	3
1151	2
1152	1
1155	1
1156	2
1157	1
1160	2
1163	1
1166	2
1170	1
1172	1
1173	1
1174	1
1175	1
1177	1
1178	1
1184	2
1186	1
1189	1
1196	1
1197	1
1199	2
1201	1
1204	1
1205	2
1206	1
1207	1
1209	1
1210	1
1213	1
1217	1
1220	1
1221	1
1223	1
1225	2
1226	1
1227	1
1229	2
1232	1
1237	2
1242	1
1245	1
1250	2
1252	1
1253	1
1255	1
1263	1
1266	3
1267	1
1271	1
1272	1
1274	1
1280	1
1281	2
1282	1
1285	1
1286	1
1290	1
1293	1
1298	1
1302	1
1304	2
1312	1
1313	1
1315	2
1316	1
1318	1
1320	1
1327	1
1329	3
1332	1
1336	1
1337	1
1339	1
1341	1
1350	1
1352	1
1354	1
1355	1
1358	1
1360	1
1367	1
1368	1
1370	1
1375	1
1377	1
1380	2
1382	1
1398	1
1404	1
1405	1
1408	1
1410	1
1415	1
1416	2
1421	1
1424	2
1425	1
1427	1
1432	1
1437	2
1441	1
1442	1
1443	1
1446	1
1449	2
1452	1
1457	1
1461	1
1466	1
1473	1
1474	1
1476	1
1478	1
1481	1
1499	1
1504	1
1507	1
1517	1
1525	1
1535	1
1536	1
1539	1
1543	1
1544	1
1549	1
1557	1
1562	2
1564	1
1567	2
1572	1
1580	1
1584	1
1594	1
1597	1
1612	2
1617	1
1620	1
1624	1
1627	1
1634	1
1637	1
1641	1
1644	1
1646	1
1648	1
1649	1
1654	1
1657	1
1659	1
1674	1
1678	1
1689	1
1691	1
1701	1
1706	1
1710	1
1711	1
1716	1
1718	1
1719	1
1746	2
1753	1
1779	1
1780	1
1793	1
1795	1
1800	1
1806	1
1807	1
1818	1
1834	1
1838	1
1842	1
1848	1
1861	1
1866	1
1870	1
1876	1
1881	1
1886	1
1887	1
1888	1
1890	1
1892	1
1911	1
1916	1
1929	1
1945	1
1953	1
1974	1
1979	1
1999	1
2018	1
2023	1
2031	1
2044	1
2062	1
2064	1
2083	1
2119	1
2122	1
2129	1
2169	1
2174	1
2235	1
2250	1
2259	1
2261	1
2291	1
2362	1
2363	1
2370	1
2384	1
2395	1
2399	1
2401	1
2408	1
2437	1
2461	1
2462	1
2527	1
2541	1
2569	1
2571	1
2605	1
2609	1
2634	1
2681	1
2684	1
2718	1
2817	1
2846	1
2871	1
3007	1
3294	1
3451	1
3489	1
3638	1
3757	1
3779	1
3792	1
3955	1
4097	1
4140	1
4674	1
4824	1
4985	1
5080	1
7675	1
8767	1
20781	1
953933	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..._._.._._.._._______....._.._...._.....__._..___._...._..._..__..._...
__._.__.._.............._____.___........__..__.._.__._._..._..._...._._
..___._.._.....
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]