Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/7bb1dd336a88b8ed2fed4c6079ccd8/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/4e14ef3ed985a78adb383d7af113c3/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/7bb1dd336a88b8ed2fed4c6079ccd8/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/8955789c790ec4d71e79f018e1b981/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
AGAP3--BRAF
starfusion
arriba
SYNE2--MTHFD1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
LINC00381--NKAIN2
starfusion
GUCY1B2--NKAIN2
starfusion
SMARCD3--MGAM
starfusion
arriba
REXO5--TMX1
starfusion
TVP23C--CDRT4
arriba
AC015911.9--SLFN12L
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
TLK2--FAM157A
arriba
0%| | 0/14 [00:00<?, ?it/s]
Processing AGAP3--BRAF: 0%| | 0/14 [00:00<?, ?it/s]
Processing AGAP3--BRAF: 7%|▋ | 1/14 [00:00<00:01, 9.23it/s]
Processing SYNE2--MTHFD1: 7%|▋ | 1/14 [00:00<00:01, 9.23it/s]
Processing SYNE2--MTHFD1: 14%|█▍ | 2/14 [00:00<00:01, 9.46it/s]
Processing TLK2P1--AC110079.1: 14%|█▍ | 2/14 [00:00<00:01, 9.46it/s]
Processing TLK2P1--AC110079.1: 21%|██▏ | 3/14 [00:00<00:01, 9.54it/s]
Processing TLK2--AC240565.1: 21%|██▏ | 3/14 [00:00<00:01, 9.54it/s]
Processing TLK2--AC240565.1: 29%|██▊ | 4/14 [00:00<00:01, 9.58it/s]
Processing LINC00381--NKAIN2: 29%|██▊ | 4/14 [00:00<00:01, 9.58it/s]
Processing LINC00381--NKAIN2: 36%|███▌ | 5/14 [00:00<00:00, 9.60it/s]
Processing GUCY1B2--NKAIN2: 36%|███▌ | 5/14 [00:00<00:00, 9.60it/s]
Processing GUCY1B2--NKAIN2: 43%|████▎ | 6/14 [00:00<00:00, 9.61it/s]
Processing SMARCD3--MGAM: 43%|████▎ | 6/14 [00:00<00:00, 9.61it/s]
Processing SMARCD3--MGAM: 50%|█████ | 7/14 [00:00<00:00, 9.62it/s]
Processing REXO5--TMX1: 50%|█████ | 7/14 [00:00<00:00, 9.62it/s]
Processing REXO5--TMX1: 57%|█████▋ | 8/14 [00:00<00:00, 9.62it/s]
Processing TVP23C--CDRT4: 57%|█████▋ | 8/14 [00:00<00:00, 9.62it/s]
Processing TVP23C--CDRT4: 64%|██████▍ | 9/14 [00:00<00:00, 9.63it/s]
Processing AC015911.9--SLFN12L: 64%|██████▍ | 9/14 [00:00<00:00, 9.63it/s]
Processing AC015911.9--SLFN12L: 71%|███████▏ | 10/14 [00:01<00:00, 9.63it/s]
Processing PCDHA10--PCDHAC2: 71%|███████▏ | 10/14 [00:01<00:00, 9.63it/s]
Processing PCDHA10--PCDHAC2: 79%|███████▊ | 11/14 [00:01<00:00, 9.63it/s]
Processing PCDHA10--PCDHAC1: 79%|███████▊ | 11/14 [00:01<00:00, 9.63it/s]
Processing PCDHA10--PCDHAC1: 86%|████████▌ | 12/14 [00:01<00:00, 9.63it/s]
Processing PCDHA10--PCDHA13: 86%|████████▌ | 12/14 [00:01<00:00, 9.63it/s]
Processing PCDHA10--PCDHA13: 93%|█████████▎| 13/14 [00:01<00:00, 9.63it/s]
Processing TLK2--FAM157A: 93%|█████████▎| 13/14 [00:01<00:00, 9.63it/s]
Processing TLK2--FAM157A: 100%|██████████| 14/14 [00:01<00:00, 9.63it/s]
Processing TLK2--FAM157A: 100%|██████████| 14/14 [00:01<00:00, 9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory