Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/7bb1dd336a88b8ed2fed4c6079ccd8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/4e14ef3ed985a78adb383d7af113c3/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/7bb1dd336a88b8ed2fed4c6079ccd8/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/8955789c790ec4d71e79f018e1b981/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
AGAP3--BRAF
starfusion
arriba
SYNE2--MTHFD1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
LINC00381--NKAIN2
starfusion
GUCY1B2--NKAIN2
starfusion
SMARCD3--MGAM
starfusion
arriba
REXO5--TMX1
starfusion
TVP23C--CDRT4
arriba
AC015911.9--SLFN12L
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
TLK2--FAM157A
arriba

  0%|          | 0/14 [00:00<?, ?it/s]
Processing AGAP3--BRAF:   0%|          | 0/14 [00:00<?, ?it/s]
Processing AGAP3--BRAF:   7%|▋         | 1/14 [00:00<00:01,  9.23it/s]
Processing SYNE2--MTHFD1:   7%|▋         | 1/14 [00:00<00:01,  9.23it/s]
Processing SYNE2--MTHFD1:  14%|█▍        | 2/14 [00:00<00:01,  9.46it/s]
Processing TLK2P1--AC110079.1:  14%|█▍        | 2/14 [00:00<00:01,  9.46it/s]
Processing TLK2P1--AC110079.1:  21%|██▏       | 3/14 [00:00<00:01,  9.54it/s]
Processing TLK2--AC240565.1:  21%|██▏       | 3/14 [00:00<00:01,  9.54it/s]  
Processing TLK2--AC240565.1:  29%|██▊       | 4/14 [00:00<00:01,  9.58it/s]
Processing LINC00381--NKAIN2:  29%|██▊       | 4/14 [00:00<00:01,  9.58it/s]
Processing LINC00381--NKAIN2:  36%|███▌      | 5/14 [00:00<00:00,  9.60it/s]
Processing GUCY1B2--NKAIN2:  36%|███▌      | 5/14 [00:00<00:00,  9.60it/s]  
Processing GUCY1B2--NKAIN2:  43%|████▎     | 6/14 [00:00<00:00,  9.61it/s]
Processing SMARCD3--MGAM:  43%|████▎     | 6/14 [00:00<00:00,  9.61it/s]  
Processing SMARCD3--MGAM:  50%|█████     | 7/14 [00:00<00:00,  9.62it/s]
Processing REXO5--TMX1:  50%|█████     | 7/14 [00:00<00:00,  9.62it/s]  
Processing REXO5--TMX1:  57%|█████▋    | 8/14 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  57%|█████▋    | 8/14 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  64%|██████▍   | 9/14 [00:00<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  64%|██████▍   | 9/14 [00:00<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  71%|███████▏  | 10/14 [00:01<00:00,  9.63it/s]
Processing PCDHA10--PCDHAC2:  71%|███████▏  | 10/14 [00:01<00:00,  9.63it/s]   
Processing PCDHA10--PCDHAC2:  79%|███████▊  | 11/14 [00:01<00:00,  9.63it/s]
Processing PCDHA10--PCDHAC1:  79%|███████▊  | 11/14 [00:01<00:00,  9.63it/s]
Processing PCDHA10--PCDHAC1:  86%|████████▌ | 12/14 [00:01<00:00,  9.63it/s]
Processing PCDHA10--PCDHA13:  86%|████████▌ | 12/14 [00:01<00:00,  9.63it/s]
Processing PCDHA10--PCDHA13:  93%|█████████▎| 13/14 [00:01<00:00,  9.63it/s]
Processing TLK2--FAM157A:  93%|█████████▎| 13/14 [00:01<00:00,  9.63it/s]   
Processing TLK2--FAM157A: 100%|██████████| 14/14 [00:01<00:00,  9.63it/s]
Processing TLK2--FAM157A: 100%|██████████| 14/14 [00:01<00:00,  9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory