Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/d0f27c1d2dc58caa147c106e3e52f3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/9bb5e108bfc2345d30e403c66577aa/659_e0S-T1-TRNA-1_B23MHV2LT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/9bb5e108bfc2345d30e403c66577aa/659_e0S-T1-TRNA-1_B23MHV2LT4_1_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/d0f27c1d2dc58caa147c106e3e52f3/.command.run
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory