[W::hts_idx_load3] The index file is older than the data file: 659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	321145513
Known Splicing Events:	318266742
Partial Novel Splicing Events:	1552127
Novel Splicing Events:	1248545
Filtered Splicing Events:	78099

Total splicing  Junctions:	591024
Known Splicing Junctions:	294319
Partial Novel Splicing Junctions:	180228
Novel Splicing Junctions:	116477

===================================================================
Create BED file ...
Create Interact file ...