File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/abe0e8b1d55e9f1c41b8643ed4d22f/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (659_bTo-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/119a8923f51d0628239d2bad0e7996/659_bTo-T1-TRNA-1_B23MHV2LT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/abe0e8b1d55e9f1c41b8643ed4d22f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/abe0e8b1d55e9f1c41b8643ed4d22f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/5e97fbc2576d4ed9e3c2a613a8ef34/659_bTo-T1-TRNA-1_B23MHV2LT4_1
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_bTo-T1-TRNA-1_B23MHV2LT4_1/abundance.h5
Successfully converted 659_bTo-T1-TRNA-1_B23MHV2LT4_1/abundance.h5 to 659_bTo-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv
  Sample: 659_bTo-T1-TRNA-1_B23MHV2LT4_1
  Mean Fragment Length: 143.7 bp
  Median Fragment Length: 131.0 bp
  pct_mito_est_counts: 0.008%
  pct_ribo_est_counts: 0.832%
  pct_hk_est_counts: 0.771%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.017%
  pct_ribo_tpm: 2.634%
  pct_hk_tpm: 1.128%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.007%