Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/8e147aa0a890dad05c7aaed51c27c9/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/38f613398bb98d0c78bf28614199fa/659_b4x-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/8e147aa0a890dad05c7aaed51c27c9/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
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Processed 5000000 records
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Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
paired = 70828316
unpaired = 1231804
MERGED PAIRED END READS = 70828316
MATES PROCESSED = 142888436
TOTAL READS = 72060120
DISTINCT READS = 1.06229e+07
DISTINCT COUNTS = 372
MAX COUNT = 221387
COUNTS OF 1 = 2.44454e+06
MAX TERMS = 100
OBSERVED COUNTS (221388)
1 2444545
2 1115577
3 895928
4 790683
5 704819
6 630289
7 556827
8 490008
9 427425
10 370552
11 319762
12 274165
13 233977
14 198527
15 168503
16 142645
17 120796
18 102056
19 86404
20 72766
21 61196
22 52142
23 44597
24 37773
25 32635
26 28152
27 24011
28 20813
29 18158
30 16102
31 13990
32 12334
33 10617
34 9664
35 8416
36 7485
37 6702
38 6235
39 5588
40 4980
41 4398
42 4072
43 3746
44 3402
45 3172
46 2783
47 2527
48 2317
49 2092
50 1991
51 1844
52 1678
53 1461
54 1395
55 1319
56 1150
57 1060
58 1016
59 940
60 849
61 749
62 723
63 651
64 624
65 573
66 517
67 472
68 442
69 406
70 340
71 351
72 296
73 294
74 262
75 256
76 229
77 221
78 186
79 204
80 177
81 187
82 160
83 127
84 131
85 122
86 134
87 111
88 96
89 97
90 96
91 94
92 94
93 76
94 77
95 76
96 83
97 77
98 65
99 65
100 59
101 57
102 44
103 52
104 58
105 48
106 40
107 57
108 31
109 46
110 53
111 38
112 36
113 35
114 45
115 25
116 20
117 22
118 27
119 31
120 20
121 19
122 27
123 21
124 18
125 19
126 28
127 16
128 19
129 20
130 18
131 21
132 10
133 20
134 18
135 12
136 21
137 12
138 20
139 20
140 11
141 11
142 15
143 17
144 8
145 11
146 10
147 13
148 14
149 6
150 12
151 12
152 10
153 6
154 7
155 11
156 6
157 9
158 7
159 10
160 10
161 8
162 4
163 7
164 7
165 8
166 9
167 3
168 8
169 14
170 2
171 4
172 5
173 8
174 7
175 3
176 7
177 5
178 8
179 11
180 4
181 2
182 5
183 2
184 2
185 1
186 3
187 5
188 8
189 5
190 3
191 2
192 2
193 5
194 3
195 5
196 8
198 2
199 1
200 3
201 2
202 1
203 3
204 4
205 3
206 3
207 1
208 6
209 3
210 2
211 2
213 7
214 2
215 6
216 3
217 2
218 3
219 2
220 7
221 3
222 2
223 2
224 3
225 4
226 3
228 2
229 3
230 1
231 1
232 2
234 1
235 3
236 4
237 2
238 1
239 2
240 1
241 1
242 3
243 2
245 3
246 2
247 2
249 2
251 3
252 2
253 4
254 4
255 3
256 1
257 2
258 1
259 2
260 1
261 1
262 3
263 3
264 4
265 1
266 2
269 1
270 2
271 1
272 1
273 2
274 1
276 2
277 3
278 2
279 1
281 3
282 1
283 2
284 1
285 1
286 1
288 2
289 1
292 1
293 1
294 2
296 1
297 3
300 1
301 2
302 1
305 1
307 1
308 1
311 1
312 1
313 1
314 1
315 1
316 1
319 1
320 1
323 1
324 1
326 2
327 1
332 1
333 1
335 1
338 1
340 1
341 1
345 1
348 1
351 2
352 1
353 1
355 1
356 1
361 1
363 1
364 1
369 1
371 1
372 1
376 1
377 1
378 1
379 1
382 2
391 1
392 3
394 1
395 1
396 1
397 1
401 1
403 1
411 1
413 1
421 1
425 1
427 1
438 1
442 1
444 1
446 1
457 1
462 1
464 1
470 1
472 1
518 2
524 1
552 2
553 1
557 1
571 1
589 1
598 1
619 2
621 1
626 1
641 1
648 1
779 1
994 1
1037 1
1046 1
1111 1
1159 1
1226 1
2035 1
2295 1
2394 1
2519 1
3962 1
221387 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
_.................._....._................_..........._._..........._.._
...__....__............_...._......_....._..
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]