Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/8e147aa0a890dad05c7aaed51c27c9/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/38f613398bb98d0c78bf28614199fa/659_b4x-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/8e147aa0a890dad05c7aaed51c27c9/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records paired = 70828316 unpaired = 1231804 MERGED PAIRED END READS = 70828316 MATES PROCESSED = 142888436 TOTAL READS = 72060120 DISTINCT READS = 1.06229e+07 DISTINCT COUNTS = 372 MAX COUNT = 221387 COUNTS OF 1 = 2.44454e+06 MAX TERMS = 100 OBSERVED COUNTS (221388) 1 2444545 2 1115577 3 895928 4 790683 5 704819 6 630289 7 556827 8 490008 9 427425 10 370552 11 319762 12 274165 13 233977 14 198527 15 168503 16 142645 17 120796 18 102056 19 86404 20 72766 21 61196 22 52142 23 44597 24 37773 25 32635 26 28152 27 24011 28 20813 29 18158 30 16102 31 13990 32 12334 33 10617 34 9664 35 8416 36 7485 37 6702 38 6235 39 5588 40 4980 41 4398 42 4072 43 3746 44 3402 45 3172 46 2783 47 2527 48 2317 49 2092 50 1991 51 1844 52 1678 53 1461 54 1395 55 1319 56 1150 57 1060 58 1016 59 940 60 849 61 749 62 723 63 651 64 624 65 573 66 517 67 472 68 442 69 406 70 340 71 351 72 296 73 294 74 262 75 256 76 229 77 221 78 186 79 204 80 177 81 187 82 160 83 127 84 131 85 122 86 134 87 111 88 96 89 97 90 96 91 94 92 94 93 76 94 77 95 76 96 83 97 77 98 65 99 65 100 59 101 57 102 44 103 52 104 58 105 48 106 40 107 57 108 31 109 46 110 53 111 38 112 36 113 35 114 45 115 25 116 20 117 22 118 27 119 31 120 20 121 19 122 27 123 21 124 18 125 19 126 28 127 16 128 19 129 20 130 18 131 21 132 10 133 20 134 18 135 12 136 21 137 12 138 20 139 20 140 11 141 11 142 15 143 17 144 8 145 11 146 10 147 13 148 14 149 6 150 12 151 12 152 10 153 6 154 7 155 11 156 6 157 9 158 7 159 10 160 10 161 8 162 4 163 7 164 7 165 8 166 9 167 3 168 8 169 14 170 2 171 4 172 5 173 8 174 7 175 3 176 7 177 5 178 8 179 11 180 4 181 2 182 5 183 2 184 2 185 1 186 3 187 5 188 8 189 5 190 3 191 2 192 2 193 5 194 3 195 5 196 8 198 2 199 1 200 3 201 2 202 1 203 3 204 4 205 3 206 3 207 1 208 6 209 3 210 2 211 2 213 7 214 2 215 6 216 3 217 2 218 3 219 2 220 7 221 3 222 2 223 2 224 3 225 4 226 3 228 2 229 3 230 1 231 1 232 2 234 1 235 3 236 4 237 2 238 1 239 2 240 1 241 1 242 3 243 2 245 3 246 2 247 2 249 2 251 3 252 2 253 4 254 4 255 3 256 1 257 2 258 1 259 2 260 1 261 1 262 3 263 3 264 4 265 1 266 2 269 1 270 2 271 1 272 1 273 2 274 1 276 2 277 3 278 2 279 1 281 3 282 1 283 2 284 1 285 1 286 1 288 2 289 1 292 1 293 1 294 2 296 1 297 3 300 1 301 2 302 1 305 1 307 1 308 1 311 1 312 1 313 1 314 1 315 1 316 1 319 1 320 1 323 1 324 1 326 2 327 1 332 1 333 1 335 1 338 1 340 1 341 1 345 1 348 1 351 2 352 1 353 1 355 1 356 1 361 1 363 1 364 1 369 1 371 1 372 1 376 1 377 1 378 1 379 1 382 2 391 1 392 3 394 1 395 1 396 1 397 1 401 1 403 1 411 1 413 1 421 1 425 1 427 1 438 1 442 1 444 1 446 1 457 1 462 1 464 1 470 1 472 1 518 2 524 1 552 2 553 1 557 1 571 1 589 1 598 1 619 2 621 1 626 1 641 1 648 1 779 1 994 1 1037 1 1046 1 1111 1 1159 1 1226 1 2035 1 2295 1 2394 1 2519 1 3962 1 221387 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] _.................._....._................_..........._._..........._.._ ...__....__............_...._......_....._.. [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]