Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/67dbb04b02ece8475f8e9e69fea094/fi_workdir/659_wQ-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/b5c6e8df0b90fcbefb56bfa8245319/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/b5c6e8df0b90fcbefb56bfa8245319/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 5441
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 5441
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:5441
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC007529.2--SOX5 HAVANA gene 21052 45271 . + . FI_gene_label "SOX5^ENSG00000134532.19" ; ID "AC007529.2--SOX5^SOX5^ENSG00000134532.19" ; exon_id "ENSE00002294946.1" ; exon_number 1 ; gene_id "AC007529.2--SOX5^SOX5^ENSG00000134532.19" ; gene_name SOX5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169026.8" ; havana_transcript "OTTHUMT00000402011.1" ; hgnc_id "HGNC:11201" ; level 2 ; orig_coord_info "chr12,23950869,23950876,-" ; protein_id "ENSP00000356174.3" ; transcript_id "AC007529.2--SOX5^ENST00000367206.7" ; transcript_name "SOX5-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
AC007529.2--SOX5 HAVANA mRNA 21052 45271 . + . FI_gene_label "SOX5^ENSG00000134532.19" ; ID "AC007529.2--SOX5^ENST00000367206.7" ; Parent "AC007529.2--SOX5^SOX5^ENSG00000134532.19" ; exon_id "ENSE00002294946.1" ; exon_number 1 ; gene_id "AC007529.2--SOX5^SOX5^ENSG00000134532.19" ; gene_name SOX5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169026.8" ; havana_transcript "OTTHUMT00000402011.1" ; hgnc_id "HGNC:11201" ; level 2 ; orig_coord_info "chr12,23950869,23950876,-" ; protein_id "ENSP00000356174.3" ; transcript_id "AC007529.2--SOX5^ENST00000367206.7" ; transcript_name "SOX5-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC107419.1--PHEX HAVANA gene 20862 48359 . + . FI_gene_label "PHEX^ENSG00000102174.9" ; ID "AC107419.1--PHEX^PHEX^ENSG00000102174.9" ; ccdsid "CCDS14204.1" ; exon_id "ENSE00001480775.4" ; exon_number 1 ; gene_id "AC107419.1--PHEX^PHEX^ENSG00000102174.9" ; gene_name PHEX ; gene_type protein_coding ; havana_gene "OTTHUMG00000021241.3" ; havana_transcript "OTTHUMT00000056035.2" ; hgnc_id "HGNC:8918" ; level 2 ; orig_coord_info "chrX,22033006,22033123,+" ; protein_id "ENSP00000368682.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC107419.1--PHEX^ENST00000379374.5" ; transcript_name "PHEX-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC107419.1--PHEX HAVANA mRNA 20862 48359 . + . FI_gene_label "PHEX^ENSG00000102174.9" ; ID "AC107419.1--PHEX^ENST00000379374.5" ; Parent "AC107419.1--PHEX^PHEX^ENSG00000102174.9" ; ccdsid "CCDS14204.1" ; exon_id "ENSE00001480775.4" ; exon_number 1 ; gene_id "AC107419.1--PHEX^PHEX^ENSG00000102174.9" ; gene_name PHEX ; gene_type protein_coding ; havana_gene "OTTHUMG00000021241.3" ; havana_transcript "OTTHUMT00000056035.2" ; hgnc_id "HGNC:8918" ; level 2 ; orig_coord_info "chrX,22033006,22033123,+" ; protein_id "ENSP00000368682.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC107419.1--PHEX^ENST00000379374.5" ; transcript_name "PHEX-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANKRD17--CCDC158 HAVANA gene 1001 43377 . + . FI_gene_label "ANKRD17^ENSG00000132466.19" ; ID "ANKRD17--CCDC158^ANKRD17^ENSG00000132466.19" ; ccdsid "CCDS34003.1" ; exon_id "ENSE00002028090.1" ; exon_number 1 ; gene_id "ANKRD17--CCDC158^ANKRD17^ENSG00000132466.19" ; gene_name ANKRD17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160826.11" ; havana_transcript "OTTHUMT00000362476.1" ; hgnc_id "HGNC:23575" ; level 2 ; orig_coord_info "chr4,73258276,73258668,-" ; protein_id "ENSP00000332265.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "ANKRD17--CCDC158^ENST00000330838.10" ; transcript_name "ANKRD17-201" ; transcript_support_level 2 ; transcript_type protein_coding
ANKRD17--CCDC158 HAVANA mRNA 1001 43377 . + . FI_gene_label "ANKRD17^ENSG00000132466.19" ; ID "ANKRD17--CCDC158^ENST00000330838.10" ; Parent "ANKRD17--CCDC158^ANKRD17^ENSG00000132466.19" ; ccdsid "CCDS34003.1" ; exon_id "ENSE00002028090.1" ; exon_number 1 ; gene_id "ANKRD17--CCDC158^ANKRD17^ENSG00000132466.19" ; gene_name ANKRD17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160826.11" ; havana_transcript "OTTHUMT00000362476.1" ; hgnc_id "HGNC:23575" ; level 2 ; orig_coord_info "chr4,73258276,73258668,-" ; protein_id "ENSP00000332265.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "ANKRD17--CCDC158^ENST00000330838.10" ; transcript_name "ANKRD17-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ANKRD17--CCDC158 HAVANA gene 51981 78570 . + . FI_gene_label "CCDC158^ENSG00000163749.17" ; ID "ANKRD17--CCDC158^CCDC158^ENSG00000163749.17" ; ccdsid "CCDS43242.1" ; exon_id "ENSE00001385883.1" ; exon_number 2 ; gene_id "ANKRD17--CCDC158^CCDC158^ENSG00000163749.17" ; gene_name CCDC158 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160916.5" ; havana_transcript "OTTHUMT00000362694.2" ; hgnc_id "HGNC:26374" ; level 2 ; orig_coord_info "chr4,76403138,76403207,-" ; protein_id "ENSP00000373566.2" ; tag basic appris_principal_1 CCDS ; transcript_id "ANKRD17--CCDC158^ENST00000388914.7" ; transcript_name "CCDC158-201" ; transcript_support_level 5 ; transcript_type protein_coding
ANKRD17--CCDC158 HAVANA mRNA 51981 78570 . + . FI_gene_label "CCDC158^ENSG00000163749.17" ; ID "ANKRD17--CCDC158^ENST00000388914.7" ; Parent "ANKRD17--CCDC158^CCDC158^ENSG00000163749.17" ; ccdsid "CCDS43242.1" ; exon_id "ENSE00001385883.1" ; exon_number 2 ; gene_id "ANKRD17--CCDC158^CCDC158^ENSG00000163749.17" ; gene_name CCDC158 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160916.5" ; havana_transcript "OTTHUMT00000362694.2" ; hgnc_id "HGNC:26374" ; level 2 ; orig_coord_info "chr4,76403138,76403207,-" ; protein_id "ENSP00000373566.2" ; tag basic appris_principal_1 CCDS ; transcript_id "ANKRD17--CCDC158^ENST00000388914.7" ; transcript_name "CCDC158-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ARPC1B--CLTCL1 HAVANA gene 1011 7904 . + . FI_gene_label "ARPC1B^ENSG00000130429.15" ; ID "ARPC1B--CLTCL1^ARPC1B^ENSG00000130429.15" ; exon_id "ENSE00003598946.1" ; exon_number 2 ; gene_id "ARPC1B--CLTCL1^ARPC1B^ENSG00000130429.15" ; gene_name ARPC1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000154552.34" ; havana_transcript "OTTHUMT00000335898.2" ; hgnc_id "HGNC:704" ; level 2 ; orig_coord_info "chr7,99385715,99385778,+" ; protein_id "ENSP00000398620.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "ARPC1B--CLTCL1^ENST00000414376.5" ; transcript_name "ARPC1B-201" ; transcript_support_level 4 ; transcript_type protein_coding
ARPC1B--CLTCL1 HAVANA mRNA 1011 7904 . + . FI_gene_label "ARPC1B^ENSG00000130429.15" ; ID "ARPC1B--CLTCL1^ENST00000414376.5" ; Parent "ARPC1B--CLTCL1^ARPC1B^ENSG00000130429.15" ; exon_id "ENSE00003598946.1" ; exon_number 2 ; gene_id "ARPC1B--CLTCL1^ARPC1B^ENSG00000130429.15" ; gene_name ARPC1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000154552.34" ; havana_transcript "OTTHUMT00000335898.2" ; hgnc_id "HGNC:704" ; level 2 ; orig_coord_info "chr7,99385715,99385778,+" ; protein_id "ENSP00000398620.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "ARPC1B--CLTCL1^ENST00000414376.5" ; transcript_name "ARPC1B-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
ARPC1B--CLTCL1 HAVANA gene 16977 52922 . + . FI_gene_label "CLTCL1^ENSG00000070371.16" ; ID "ARPC1B--CLTCL1^CLTCL1^ENSG00000070371.16" ; ccdsid "CCDS46662.2" ; exon_id "ENSE00003718482.2" ; exon_number 1 ; gene_id "ARPC1B--CLTCL1^CLTCL1^ENSG00000070371.16" ; gene_name CLTCL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150109.11" ; havana_transcript "OTTHUMT00000316397.7" ; hgnc_id "HGNC:2093" ; level 2 ; orig_coord_info "chr22,19291600,19291641,-" ; protein_id "ENSP00000441158.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARPC1B--CLTCL1^ENST00000427926.6" ; transcript_name "CLTCL1-202" ; transcript_support_level 1 ; transcript_type protein_coding
ARPC1B--CLTCL1 HAVANA mRNA 16977 52922 . + . FI_gene_label "CLTCL1^ENSG00000070371.16" ; ID "ARPC1B--CLTCL1^ENST00000427926.6" ; Parent "ARPC1B--CLTCL1^CLTCL1^ENSG00000070371.16" ; ccdsid "CCDS46662.2" ; exon_id "ENSE00003718482.2" ; exon_number 1 ; gene_id "ARPC1B--CLTCL1^CLTCL1^ENSG00000070371.16" ; gene_name CLTCL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150109.11" ; havana_transcript "OTTHUMT00000316397.7" ; hgnc_id "HGNC:2093" ; level 2 ; orig_coord_info "chr22,19291600,19291641,-" ; protein_id "ENSP00000441158.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARPC1B--CLTCL1^ENST00000427926.6" ; transcript_name "CLTCL1-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
E2F1--ZNF341 HAVANA gene 9922 28921 . + . FI_gene_label "ZNF341^ENSG00000131061.14" ; ID "E2F1--ZNF341^ZNF341^ENSG00000131061.14" ; ccdsid "CCDS13227.1" ; exon_id "ENSE00001660419.1" ; exon_number 1 ; gene_id "E2F1--ZNF341^ZNF341^ENSG00000131061.14" ; gene_name ZNF341 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032275.5" ; havana_transcript "OTTHUMT00000078741.2" ; hgnc_id "HGNC:15992" ; level 2 ; orig_coord_info "chr20,33732022,33732052,+" ; protein_id "ENSP00000344308.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "E2F1--ZNF341^ENST00000342427.6" ; transcript_name "ZNF341-201" ; transcript_support_level 1 ; transcript_type protein_coding
E2F1--ZNF341 HAVANA mRNA 9922 28921 . + . FI_gene_label "ZNF341^ENSG00000131061.14" ; ID "E2F1--ZNF341^ENST00000342427.6" ; Parent "E2F1--ZNF341^ZNF341^ENSG00000131061.14" ; ccdsid "CCDS13227.1" ; exon_id "ENSE00001660419.1" ; exon_number 1 ; gene_id "E2F1--ZNF341^ZNF341^ENSG00000131061.14" ; gene_name ZNF341 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032275.5" ; havana_transcript "OTTHUMT00000078741.2" ; hgnc_id "HGNC:15992" ; level 2 ; orig_coord_info "chr20,33732022,33732052,+" ; protein_id "ENSP00000344308.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "E2F1--ZNF341^ENST00000342427.6" ; transcript_name "ZNF341-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
E2F1--ZNF341 HAVANA gene 1001 6921 . + . FI_gene_label "E2F1^ENSG00000101412.13" ; ID "E2F1--ZNF341^E2F1^ENSG00000101412.13" ; ccdsid "CCDS13224.1" ; exon_id "ENSE00001667355.2" ; exon_number 1 ; gene_id "E2F1--ZNF341^E2F1^ENSG00000101412.13" ; gene_name E2F1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032265.3" ; havana_transcript "OTTHUMT00000078731.3" ; hgnc_id "HGNC:3113" ; level 2 ; orig_coord_info "chr20,33686004,33686264,-" ; protein_id "ENSP00000345571.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "E2F1--ZNF341^ENST00000343380.6" ; transcript_name "E2F1-201" ; transcript_support_level 1 ; transcript_type protein_coding
E2F1--ZNF341 HAVANA mRNA 1001 6921 . + . FI_gene_label "E2F1^ENSG00000101412.13" ; ID "E2F1--ZNF341^ENST00000343380.6" ; Parent "E2F1--ZNF341^E2F1^ENSG00000101412.13" ; ccdsid "CCDS13224.1" ; exon_id "ENSE00001667355.2" ; exon_number 1 ; gene_id "E2F1--ZNF341^E2F1^ENSG00000101412.13" ; gene_name E2F1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032265.3" ; havana_transcript "OTTHUMT00000078731.3" ; hgnc_id "HGNC:3113" ; level 2 ; orig_coord_info "chr20,33686004,33686264,-" ; protein_id "ENSP00000345571.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "E2F1--ZNF341^ENST00000343380.6" ; transcript_name "E2F1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EIF2A--TSC22D2 HAVANA gene 1117 16265 . + . FI_gene_label "EIF2A^ENSG00000144895.12" ; ID "EIF2A--TSC22D2^EIF2A^ENSG00000144895.12" ; ccdsid "CCDS82860.1" ; exon_id "ENSE00001871427.1" ; exon_number 1 ; gene_id "EIF2A--TSC22D2^EIF2A^ENSG00000144895.12" ; gene_name EIF2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000159775.4" ; havana_transcript "OTTHUMT00000357262.1" ; hgnc_id "HGNC:3254" ; level 2 ; orig_coord_info "chr3,150546803,150546830,+" ; protein_id "ENSP00000273435.5" ; tag basic CCDS ; transcript_id "EIF2A--TSC22D2^ENST00000273435.9" ; transcript_name "EIF2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
EIF2A--TSC22D2 HAVANA mRNA 1117 16265 . + . FI_gene_label "EIF2A^ENSG00000144895.12" ; ID "EIF2A--TSC22D2^ENST00000273435.9" ; Parent "EIF2A--TSC22D2^EIF2A^ENSG00000144895.12" ; ccdsid "CCDS82860.1" ; exon_id "ENSE00001871427.1" ; exon_number 1 ; gene_id "EIF2A--TSC22D2^EIF2A^ENSG00000144895.12" ; gene_name EIF2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000159775.4" ; havana_transcript "OTTHUMT00000357262.1" ; hgnc_id "HGNC:3254" ; level 2 ; orig_coord_info "chr3,150546803,150546830,+" ; protein_id "ENSP00000273435.5" ; tag basic CCDS ; transcript_id "EIF2A--TSC22D2^ENST00000273435.9" ; transcript_name "EIF2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EIF2A--TSC22D2 HAVANA gene 21040 36816 . + . FI_gene_label "TSC22D2^ENSG00000196428.12" ; ID "EIF2A--TSC22D2^TSC22D2^ENSG00000196428.12" ; ccdsid "CCDS3149.1" ; exon_id "ENSE00001076872.5" ; exon_number 1 ; gene_id "EIF2A--TSC22D2^TSC22D2^ENSG00000196428.12" ; gene_name TSC22D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159744.2" ; havana_transcript "OTTHUMT00000357123.2" ; hgnc_id "HGNC:29095" ; level 2 ; orig_coord_info "chr3,150409351,150411308,+" ; protein_id "ENSP00000354543.2" ; tag basic appris_principal_1 CCDS ; transcript_id "EIF2A--TSC22D2^ENST00000361875.7" ; transcript_name "TSC22D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
EIF2A--TSC22D2 HAVANA mRNA 21040 36816 . + . FI_gene_label "TSC22D2^ENSG00000196428.12" ; ID "EIF2A--TSC22D2^ENST00000361875.7" ; Parent "EIF2A--TSC22D2^TSC22D2^ENSG00000196428.12" ; ccdsid "CCDS3149.1" ; exon_id "ENSE00001076872.5" ; exon_number 1 ; gene_id "EIF2A--TSC22D2^TSC22D2^ENSG00000196428.12" ; gene_name TSC22D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159744.2" ; havana_transcript "OTTHUMT00000357123.2" ; hgnc_id "HGNC:29095" ; level 2 ; orig_coord_info "chr3,150409351,150411308,+" ; protein_id "ENSP00000354543.2" ; tag basic appris_principal_1 CCDS ; transcript_id "EIF2A--TSC22D2^ENST00000361875.7" ; transcript_name "TSC22D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ETNK1--AC087235.1 HAVANA gene 1097 25041 . + . FI_gene_label "ETNK1^ENSG00000139163.16" ; ID "ETNK1--AC087235.1^ETNK1^ENSG00000139163.16" ; exon_id "ENSE00003895506.1" ; exon_number 1 ; gene_id "ETNK1--AC087235.1^ETNK1^ENSG00000139163.16" ; gene_name ETNK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169008.9" ; havana_transcript "OTTHUMT00000401926.4" ; hgnc_id "HGNC:24649" ; level 2 ; orig_coord_info "chr12,22625431,22625586,+" ; protein_id "ENSP00000266517.4" ; tag upstream_ATG basic MANE_Select appris_principal_1 ; transcript_id "ETNK1--AC087235.1^ENST00000266517.9" ; transcript_name "ETNK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ETNK1--AC087235.1 HAVANA mRNA 1097 25041 . + . FI_gene_label "ETNK1^ENSG00000139163.16" ; ID "ETNK1--AC087235.1^ENST00000266517.9" ; Parent "ETNK1--AC087235.1^ETNK1^ENSG00000139163.16" ; exon_id "ENSE00003895506.1" ; exon_number 1 ; gene_id "ETNK1--AC087235.1^ETNK1^ENSG00000139163.16" ; gene_name ETNK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169008.9" ; havana_transcript "OTTHUMT00000401926.4" ; hgnc_id "HGNC:24649" ; level 2 ; orig_coord_info "chr12,22625431,22625586,+" ; protein_id "ENSP00000266517.4" ; tag upstream_ATG basic MANE_Select appris_principal_1 ; transcript_id "ETNK1--AC087235.1^ENST00000266517.9" ; transcript_name "ETNK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ETNK1--SOX5 HAVANA gene 1097 25041 . + . FI_gene_label "ETNK1^ENSG00000139163.16" ; ID "ETNK1--SOX5^ETNK1^ENSG00000139163.16" ; exon_id "ENSE00003895506.1" ; exon_number 1 ; gene_id "ETNK1--SOX5^ETNK1^ENSG00000139163.16" ; gene_name ETNK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169008.9" ; havana_transcript "OTTHUMT00000401926.4" ; hgnc_id "HGNC:24649" ; level 2 ; orig_coord_info "chr12,22625431,22625586,+" ; protein_id "ENSP00000266517.4" ; tag upstream_ATG basic MANE_Select appris_principal_1 ; transcript_id "ETNK1--SOX5^ENST00000266517.9" ; transcript_name "ETNK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ETNK1--SOX5 HAVANA mRNA 1097 25041 . + . FI_gene_label "ETNK1^ENSG00000139163.16" ; ID "ETNK1--SOX5^ENST00000266517.9" ; Parent "ETNK1--SOX5^ETNK1^ENSG00000139163.16" ; exon_id "ENSE00003895506.1" ; exon_number 1 ; gene_id "ETNK1--SOX5^ETNK1^ENSG00000139163.16" ; gene_name ETNK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169008.9" ; havana_transcript "OTTHUMT00000401926.4" ; hgnc_id "HGNC:24649" ; level 2 ; orig_coord_info "chr12,22625431,22625586,+" ; protein_id "ENSP00000266517.4" ; tag upstream_ATG basic MANE_Select appris_principal_1 ; transcript_id "ETNK1--SOX5^ENST00000266517.9" ; transcript_name "ETNK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ETNK1--SOX5 HAVANA gene 38788 63007 . + . FI_gene_label "SOX5^ENSG00000134532.19" ; ID "ETNK1--SOX5^SOX5^ENSG00000134532.19" ; exon_id "ENSE00002294946.1" ; exon_number 1 ; gene_id "ETNK1--SOX5^SOX5^ENSG00000134532.19" ; gene_name SOX5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169026.8" ; havana_transcript "OTTHUMT00000402011.1" ; hgnc_id "HGNC:11201" ; level 2 ; orig_coord_info "chr12,23950869,23950876,-" ; protein_id "ENSP00000356174.3" ; transcript_id "ETNK1--SOX5^ENST00000367206.7" ; transcript_name "SOX5-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
ETNK1--SOX5 HAVANA mRNA 38788 63007 . + . FI_gene_label "SOX5^ENSG00000134532.19" ; ID "ETNK1--SOX5^ENST00000367206.7" ; Parent "ETNK1--SOX5^SOX5^ENSG00000134532.19" ; exon_id "ENSE00002294946.1" ; exon_number 1 ; gene_id "ETNK1--SOX5^SOX5^ENSG00000134532.19" ; gene_name SOX5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169026.8" ; havana_transcript "OTTHUMT00000402011.1" ; hgnc_id "HGNC:11201" ; level 2 ; orig_coord_info "chr12,23950869,23950876,-" ; protein_id "ENSP00000356174.3" ; transcript_id "ETNK1--SOX5^ENST00000367206.7" ; transcript_name "SOX5-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
IPO9--AC013470.2 HAVANA gene 1009 31244 . + . FI_gene_label "IPO9^ENSG00000198700.10" ; ID "IPO9--AC013470.2^IPO9^ENSG00000198700.10" ; ccdsid "CCDS1415.1" ; exon_id "ENSE00001821710.2" ; exon_number 1 ; gene_id "IPO9--AC013470.2^IPO9^ENSG00000198700.10" ; gene_name IPO9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035805.2" ; havana_transcript "OTTHUMT00000087088.2" ; hgnc_id "HGNC:19425" ; level 2 ; orig_coord_info "chr1,201829210,201829372,+" ; protein_id "ENSP00000354742.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IPO9--AC013470.2^ENST00000361565.9" ; transcript_name "IPO9-201" ; transcript_support_level 1 ; transcript_type protein_coding
IPO9--AC013470.2 HAVANA mRNA 1009 31244 . + . FI_gene_label "IPO9^ENSG00000198700.10" ; ID "IPO9--AC013470.2^ENST00000361565.9" ; Parent "IPO9--AC013470.2^IPO9^ENSG00000198700.10" ; ccdsid "CCDS1415.1" ; exon_id "ENSE00001821710.2" ; exon_number 1 ; gene_id "IPO9--AC013470.2^IPO9^ENSG00000198700.10" ; gene_name IPO9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035805.2" ; havana_transcript "OTTHUMT00000087088.2" ; hgnc_id "HGNC:19425" ; level 2 ; orig_coord_info "chr1,201829210,201829372,+" ; protein_id "ENSP00000354742.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IPO9--AC013470.2^ENST00000361565.9" ; transcript_name "IPO9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IPO9--AC013470.2 HAVANA gene 39504 43219 . + . FI_gene_label "AC013470.2^ENSG00000226690.8" ; ID "IPO9--AC013470.2^AC013470.2^ENSG00000226690.8" ; exon_id "ENSE00001719828.1" ; exon_number 1 ; gene_id "IPO9--AC013470.2^AC013470.2^ENSG00000226690.8" ; gene_name "AC013470.2" ; gene_type protein_coding ; havana_gene "OTTHUMG00000152383.5" ; havana_transcript "OTTHUMT00000326040.2" ; level 2 ; orig_coord_info "chr7,12504544,12504546,+" ; protein_id "ENSP00000490216.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "IPO9--AC013470.2^ENST00000443874.1" ; transcript_name "AC013470.2-204" ; transcript_support_level 3 ; transcript_type protein_coding
IPO9--AC013470.2 HAVANA mRNA 39504 43219 . + . FI_gene_label "AC013470.2^ENSG00000226690.8" ; ID "IPO9--AC013470.2^ENST00000443874.1" ; Parent "IPO9--AC013470.2^AC013470.2^ENSG00000226690.8" ; exon_id "ENSE00001719828.1" ; exon_number 1 ; gene_id "IPO9--AC013470.2^AC013470.2^ENSG00000226690.8" ; gene_name "AC013470.2" ; gene_type protein_coding ; havana_gene "OTTHUMG00000152383.5" ; havana_transcript "OTTHUMT00000326040.2" ; level 2 ; orig_coord_info "chr7,12504544,12504546,+" ; protein_id "ENSP00000490216.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "IPO9--AC013470.2^ENST00000443874.1" ; transcript_name "AC013470.2-204" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
ITPR2--AC007529.2 HAVANA gene 1414 7149 . + . FI_gene_label "ITPR2^ENSG00000123104.12" ; ID "ITPR2--AC007529.2^ITPR2^ENSG00000123104.12" ; exon_id "ENSE00002282656.1" ; exon_number 1 ; gene_id "ITPR2--AC007529.2^ITPR2^ENSG00000123104.12" ; gene_name ITPR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169181.5" ; havana_transcript "OTTHUMT00000402735.1" ; hgnc_id "HGNC:6181" ; level 2 ; orig_coord_info "chr12,26832690,26832781,-" ; protein_id "ENSP00000242737.5" ; tag basic ; transcript_id "ITPR2--AC007529.2^ENST00000242737.5" ; transcript_name "ITPR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ITPR2--AC007529.2 HAVANA mRNA 1414 7149 . + . FI_gene_label "ITPR2^ENSG00000123104.12" ; ID "ITPR2--AC007529.2^ENST00000242737.5" ; Parent "ITPR2--AC007529.2^ITPR2^ENSG00000123104.12" ; exon_id "ENSE00002282656.1" ; exon_number 1 ; gene_id "ITPR2--AC007529.2^ITPR2^ENSG00000123104.12" ; gene_name ITPR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169181.5" ; havana_transcript "OTTHUMT00000402735.1" ; hgnc_id "HGNC:6181" ; level 2 ; orig_coord_info "chr12,26832690,26832781,-" ; protein_id "ENSP00000242737.5" ; tag basic ; transcript_id "ITPR2--AC007529.2^ENST00000242737.5" ; transcript_name "ITPR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ITPR2--SKP1P2 HAVANA gene 1414 7149 . + . FI_gene_label "ITPR2^ENSG00000123104.12" ; ID "ITPR2--SKP1P2^ITPR2^ENSG00000123104.12" ; exon_id "ENSE00002282656.1" ; exon_number 1 ; gene_id "ITPR2--SKP1P2^ITPR2^ENSG00000123104.12" ; gene_name ITPR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169181.5" ; havana_transcript "OTTHUMT00000402735.1" ; hgnc_id "HGNC:6181" ; level 2 ; orig_coord_info "chr12,26832690,26832781,-" ; protein_id "ENSP00000242737.5" ; tag basic ; transcript_id "ITPR2--SKP1P2^ENST00000242737.5" ; transcript_name "ITPR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ITPR2--SKP1P2 HAVANA mRNA 1414 7149 . + . FI_gene_label "ITPR2^ENSG00000123104.12" ; ID "ITPR2--SKP1P2^ENST00000242737.5" ; Parent "ITPR2--SKP1P2^ITPR2^ENSG00000123104.12" ; exon_id "ENSE00002282656.1" ; exon_number 1 ; gene_id "ITPR2--SKP1P2^ITPR2^ENSG00000123104.12" ; gene_name ITPR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169181.5" ; havana_transcript "OTTHUMT00000402735.1" ; hgnc_id "HGNC:6181" ; level 2 ; orig_coord_info "chr12,26832690,26832781,-" ; protein_id "ENSP00000242737.5" ; tag basic ; transcript_id "ITPR2--SKP1P2^ENST00000242737.5" ; transcript_name "ITPR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^ENST00000289272.3" ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^ENST00000378126.4" ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PHEX--AC004470.2 HAVANA gene 1001 28498 . + . FI_gene_label "PHEX^ENSG00000102174.9" ; ID "PHEX--AC004470.2^PHEX^ENSG00000102174.9" ; ccdsid "CCDS14204.1" ; exon_id "ENSE00001480775.4" ; exon_number 1 ; gene_id "PHEX--AC004470.2^PHEX^ENSG00000102174.9" ; gene_name PHEX ; gene_type protein_coding ; havana_gene "OTTHUMG00000021241.3" ; havana_transcript "OTTHUMT00000056035.2" ; hgnc_id "HGNC:8918" ; level 2 ; orig_coord_info "chrX,22033006,22033123,+" ; protein_id "ENSP00000368682.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PHEX--AC004470.2^ENST00000379374.5" ; transcript_name "PHEX-201" ; transcript_support_level 1 ; transcript_type protein_coding
PHEX--AC004470.2 HAVANA mRNA 1001 28498 . + . FI_gene_label "PHEX^ENSG00000102174.9" ; ID "PHEX--AC004470.2^ENST00000379374.5" ; Parent "PHEX--AC004470.2^PHEX^ENSG00000102174.9" ; ccdsid "CCDS14204.1" ; exon_id "ENSE00001480775.4" ; exon_number 1 ; gene_id "PHEX--AC004470.2^PHEX^ENSG00000102174.9" ; gene_name PHEX ; gene_type protein_coding ; havana_gene "OTTHUMG00000021241.3" ; havana_transcript "OTTHUMT00000056035.2" ; hgnc_id "HGNC:8918" ; level 2 ; orig_coord_info "chrX,22033006,22033123,+" ; protein_id "ENSP00000368682.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PHEX--AC004470.2^ENST00000379374.5" ; transcript_name "PHEX-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PXMP4--ZNF341 HAVANA gene 1010 4988 . + . FI_gene_label "PXMP4^ENSG00000101417.12" ; ID "PXMP4--ZNF341^PXMP4^ENSG00000101417.12" ; exon_id "ENSE00001925420.1" ; exon_number 1 ; gene_id "PXMP4--ZNF341^PXMP4^ENSG00000101417.12" ; gene_name PXMP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032273.5" ; havana_transcript "OTTHUMT00000334677.1" ; hgnc_id "HGNC:15920" ; level 2 ; orig_coord_info "chr20,33720095,33720207,-" ; protein_id "ENSP00000217398.3" ; tag basic ; transcript_id "PXMP4--ZNF341^ENST00000217398.3" ; transcript_name "PXMP4-201" ; transcript_support_level 2 ; transcript_type protein_coding
PXMP4--ZNF341 HAVANA mRNA 1010 4988 . + . FI_gene_label "PXMP4^ENSG00000101417.12" ; ID "PXMP4--ZNF341^ENST00000217398.3" ; Parent "PXMP4--ZNF341^PXMP4^ENSG00000101417.12" ; exon_id "ENSE00001925420.1" ; exon_number 1 ; gene_id "PXMP4--ZNF341^PXMP4^ENSG00000101417.12" ; gene_name PXMP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032273.5" ; havana_transcript "OTTHUMT00000334677.1" ; hgnc_id "HGNC:15920" ; level 2 ; orig_coord_info "chr20,33720095,33720207,-" ; protein_id "ENSP00000217398.3" ; tag basic ; transcript_id "PXMP4--ZNF341^ENST00000217398.3" ; transcript_name "PXMP4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PXMP4--ZNF341 HAVANA gene 12720 31719 . + . FI_gene_label "ZNF341^ENSG00000131061.14" ; ID "PXMP4--ZNF341^ZNF341^ENSG00000131061.14" ; ccdsid "CCDS13227.1" ; exon_id "ENSE00001660419.1" ; exon_number 1 ; gene_id "PXMP4--ZNF341^ZNF341^ENSG00000131061.14" ; gene_name ZNF341 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032275.5" ; havana_transcript "OTTHUMT00000078741.2" ; hgnc_id "HGNC:15992" ; level 2 ; orig_coord_info "chr20,33732022,33732052,+" ; protein_id "ENSP00000344308.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PXMP4--ZNF341^ENST00000342427.6" ; transcript_name "ZNF341-201" ; transcript_support_level 1 ; transcript_type protein_coding
PXMP4--ZNF341 HAVANA mRNA 12720 31719 . + . FI_gene_label "ZNF341^ENSG00000131061.14" ; ID "PXMP4--ZNF341^ENST00000342427.6" ; Parent "PXMP4--ZNF341^ZNF341^ENSG00000131061.14" ; ccdsid "CCDS13227.1" ; exon_id "ENSE00001660419.1" ; exon_number 1 ; gene_id "PXMP4--ZNF341^ZNF341^ENSG00000131061.14" ; gene_name ZNF341 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032275.5" ; havana_transcript "OTTHUMT00000078741.2" ; hgnc_id "HGNC:15992" ; level 2 ; orig_coord_info "chr20,33732022,33732052,+" ; protein_id "ENSP00000344308.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PXMP4--ZNF341^ENST00000342427.6" ; transcript_name "ZNF341-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RASSF8--CMAS HAVANA gene 22538 29850 . + . FI_gene_label "CMAS^ENSG00000111726.13" ; ID "RASSF8--CMAS^CMAS^ENSG00000111726.13" ; ccdsid "CCDS8696.1" ; exon_id "ENSE00002205401.2" ; exon_number 1 ; gene_id "RASSF8--CMAS^CMAS^ENSG00000111726.13" ; gene_name CMAS ; gene_type protein_coding ; havana_gene "OTTHUMG00000169097.3" ; havana_transcript "OTTHUMT00000402235.2" ; hgnc_id "HGNC:18290" ; level 2 ; orig_coord_info "chr12,22046304,22046563,+" ; protein_id "ENSP00000229329.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RASSF8--CMAS^ENST00000229329.7" ; transcript_name "CMAS-201" ; transcript_support_level 1 ; transcript_type protein_coding
RASSF8--CMAS HAVANA mRNA 22538 29850 . + . FI_gene_label "CMAS^ENSG00000111726.13" ; ID "RASSF8--CMAS^ENST00000229329.7" ; Parent "RASSF8--CMAS^CMAS^ENSG00000111726.13" ; ccdsid "CCDS8696.1" ; exon_id "ENSE00002205401.2" ; exon_number 1 ; gene_id "RASSF8--CMAS^CMAS^ENSG00000111726.13" ; gene_name CMAS ; gene_type protein_coding ; havana_gene "OTTHUMG00000169097.3" ; havana_transcript "OTTHUMT00000402235.2" ; hgnc_id "HGNC:18290" ; level 2 ; orig_coord_info "chr12,22046304,22046563,+" ; protein_id "ENSP00000229329.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RASSF8--CMAS^ENST00000229329.7" ; transcript_name "CMAS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RASSF8--CMAS HAVANA gene 7841 13817 . + . FI_gene_label "RASSF8^ENSG00000123094.15" ; ID "RASSF8--CMAS^RASSF8^ENSG00000123094.15" ; ccdsid "CCDS53765.1" ; exon_id "ENSE00001315354.6" ; exon_number 2 ; gene_id "RASSF8--CMAS^RASSF8^ENSG00000123094.15" ; gene_name RASSF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169087.6" ; havana_transcript "OTTHUMT00000402212.1" ; hgnc_id "HGNC:13232" ; level 2 ; orig_coord_info "chr12,26055344,26055446,+" ; protein_id "ENSP00000282884.9" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "RASSF8--CMAS^ENST00000282884.13" ; transcript_name "RASSF8-201" ; transcript_support_level 2 ; transcript_type protein_coding
RASSF8--CMAS HAVANA mRNA 7841 13817 . + . FI_gene_label "RASSF8^ENSG00000123094.15" ; ID "RASSF8--CMAS^ENST00000282884.13" ; Parent "RASSF8--CMAS^RASSF8^ENSG00000123094.15" ; ccdsid "CCDS53765.1" ; exon_id "ENSE00001315354.6" ; exon_number 2 ; gene_id "RASSF8--CMAS^RASSF8^ENSG00000123094.15" ; gene_name RASSF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169087.6" ; havana_transcript "OTTHUMT00000402212.1" ; hgnc_id "HGNC:13232" ; level 2 ; orig_coord_info "chr12,26055344,26055446,+" ; protein_id "ENSP00000282884.9" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "RASSF8--CMAS^ENST00000282884.13" ; transcript_name "RASSF8-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RNF217--PARD3B HAVANA gene 29797 62033 . + . FI_gene_label "PARD3B^ENSG00000116117.18" ; ID "RNF217--PARD3B^PARD3B^ENSG00000116117.18" ; ccdsid "CCDS42804.1" ; exon_id "ENSE00001172277.2" ; exon_number 1 ; gene_id "RNF217--PARD3B^PARD3B^ENSG00000116117.18" ; gene_name PARD3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000154562.5" ; havana_transcript "OTTHUMT00000335995.1" ; hgnc_id "HGNC:14446" ; level 2 ; orig_coord_info "chr2,204546000,204546119,+" ; protein_id "ENSP00000340280.3" ; tag basic CCDS ; transcript_id "RNF217--PARD3B^ENST00000349953.7" ; transcript_name "PARD3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF217--PARD3B HAVANA mRNA 29797 62033 . + . FI_gene_label "PARD3B^ENSG00000116117.18" ; ID "RNF217--PARD3B^ENST00000349953.7" ; Parent "RNF217--PARD3B^PARD3B^ENSG00000116117.18" ; ccdsid "CCDS42804.1" ; exon_id "ENSE00001172277.2" ; exon_number 1 ; gene_id "RNF217--PARD3B^PARD3B^ENSG00000116117.18" ; gene_name PARD3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000154562.5" ; havana_transcript "OTTHUMT00000335995.1" ; hgnc_id "HGNC:14446" ; level 2 ; orig_coord_info "chr2,204546000,204546119,+" ; protein_id "ENSP00000340280.3" ; tag basic CCDS ; transcript_id "RNF217--PARD3B^ENST00000349953.7" ; transcript_name "PARD3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF217--PARD3B HAVANA gene 4231 17153 . + . FI_gene_label "RNF217^ENSG00000146373.16" ; ID "RNF217--PARD3B^RNF217^ENSG00000146373.16" ; ccdsid "CCDS5129.1" ; exon_id "ENSE00003786918.1" ; exon_number 3 ; gene_id "RNF217--PARD3B^RNF217^ENSG00000146373.16" ; gene_name RNF217 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015504.6" ; havana_transcript "OTTHUMT00000042064.3" ; hgnc_id "HGNC:21487" ; level 2 ; orig_coord_info "chr6,125009277,125009282,+" ; protein_id "ENSP00000352734.2" ; tag basic CCDS ; transcript_id "RNF217--PARD3B^ENST00000359704.2" ; transcript_name "RNF217-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF217--PARD3B HAVANA mRNA 4231 17153 . + . FI_gene_label "RNF217^ENSG00000146373.16" ; ID "RNF217--PARD3B^ENST00000359704.2" ; Parent "RNF217--PARD3B^RNF217^ENSG00000146373.16" ; ccdsid "CCDS5129.1" ; exon_id "ENSE00003786918.1" ; exon_number 3 ; gene_id "RNF217--PARD3B^RNF217^ENSG00000146373.16" ; gene_name RNF217 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015504.6" ; havana_transcript "OTTHUMT00000042064.3" ; hgnc_id "HGNC:21487" ; level 2 ; orig_coord_info "chr6,125009277,125009282,+" ; protein_id "ENSP00000352734.2" ; tag basic CCDS ; transcript_id "RNF217--PARD3B^ENST00000359704.2" ; transcript_name "RNF217-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SENP6--EYS HAVANA gene 1419 21371 . + . FI_gene_label "SENP6^ENSG00000112701.18" ; ID "SENP6--EYS^SENP6^ENSG00000112701.18" ; ccdsid "CCDS78158.1" ; exon_id "ENSE00001451492.2" ; exon_number 1 ; gene_id "SENP6--EYS^SENP6^ENSG00000112701.18" ; gene_name SENP6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015060.5" ; havana_transcript "OTTHUMT00000366019.1" ; hgnc_id "HGNC:20944" ; level 2 ; orig_coord_info "chr6,75602525,75602576,+" ; protein_id "ENSP00000321820.8" ; tag basic CCDS ; transcript_id "SENP6--EYS^ENST00000327284.12" ; transcript_name "SENP6-201" ; transcript_support_level 2 ; transcript_type protein_coding
SENP6--EYS HAVANA mRNA 1419 21371 . + . FI_gene_label "SENP6^ENSG00000112701.18" ; ID "SENP6--EYS^ENST00000327284.12" ; Parent "SENP6--EYS^SENP6^ENSG00000112701.18" ; ccdsid "CCDS78158.1" ; exon_id "ENSE00001451492.2" ; exon_number 1 ; gene_id "SENP6--EYS^SENP6^ENSG00000112701.18" ; gene_name SENP6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015060.5" ; havana_transcript "OTTHUMT00000366019.1" ; hgnc_id "HGNC:20944" ; level 2 ; orig_coord_info "chr6,75602525,75602576,+" ; protein_id "ENSP00000321820.8" ; tag basic CCDS ; transcript_id "SENP6--EYS^ENST00000327284.12" ; transcript_name "SENP6-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SENP6--EYS HAVANA gene 38992 50525 . + . FI_gene_label "EYS^ENSG00000188107.15" ; ID "SENP6--EYS^EYS^ENSG00000188107.15" ; ccdsid "CCDS4967.1" ; exon_id "ENSE00003593910.1" ; exon_number 2 ; gene_id "SENP6--EYS^EYS^ENSG00000188107.15" ; gene_name EYS ; gene_type protein_coding ; havana_gene "OTTHUMG00000014971.11" ; havana_transcript "OTTHUMT00000277086.1" ; hgnc_id "HGNC:21555" ; level 1 ; orig_coord_info "chr6,65494663,65495410,-" ; protein_id "ENSP00000341818.5" ; tag basic exp_conf CCDS ; transcript_id "SENP6--EYS^ENST00000342421.9" ; transcript_name "EYS-202" ; transcript_support_level 1 ; transcript_type protein_coding
SENP6--EYS HAVANA mRNA 38992 50525 . + . FI_gene_label "EYS^ENSG00000188107.15" ; ID "SENP6--EYS^ENST00000342421.9" ; Parent "SENP6--EYS^EYS^ENSG00000188107.15" ; ccdsid "CCDS4967.1" ; exon_id "ENSE00003593910.1" ; exon_number 2 ; gene_id "SENP6--EYS^EYS^ENSG00000188107.15" ; gene_name EYS ; gene_type protein_coding ; havana_gene "OTTHUMG00000014971.11" ; havana_transcript "OTTHUMT00000277086.1" ; hgnc_id "HGNC:21555" ; level 1 ; orig_coord_info "chr6,65494663,65495410,-" ; protein_id "ENSP00000341818.5" ; tag basic exp_conf CCDS ; transcript_id "SENP6--EYS^ENST00000342421.9" ; transcript_name "EYS-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SKP1P2--SOX5 HAVANA gene 15558 39777 . + . FI_gene_label "SOX5^ENSG00000134532.19" ; ID "SKP1P2--SOX5^SOX5^ENSG00000134532.19" ; exon_id "ENSE00002294946.1" ; exon_number 1 ; gene_id "SKP1P2--SOX5^SOX5^ENSG00000134532.19" ; gene_name SOX5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169026.8" ; havana_transcript "OTTHUMT00000402011.1" ; hgnc_id "HGNC:11201" ; level 2 ; orig_coord_info "chr12,23950869,23950876,-" ; protein_id "ENSP00000356174.3" ; transcript_id "SKP1P2--SOX5^ENST00000367206.7" ; transcript_name "SOX5-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
SKP1P2--SOX5 HAVANA mRNA 15558 39777 . + . FI_gene_label "SOX5^ENSG00000134532.19" ; ID "SKP1P2--SOX5^ENST00000367206.7" ; Parent "SKP1P2--SOX5^SOX5^ENSG00000134532.19" ; exon_id "ENSE00002294946.1" ; exon_number 1 ; gene_id "SKP1P2--SOX5^SOX5^ENSG00000134532.19" ; gene_name SOX5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169026.8" ; havana_transcript "OTTHUMT00000402011.1" ; hgnc_id "HGNC:11201" ; level 2 ; orig_coord_info "chr12,23950869,23950876,-" ; protein_id "ENSP00000356174.3" ; transcript_id "SKP1P2--SOX5^ENST00000367206.7" ; transcript_name "SOX5-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
SLC2A13--IL1RAPL1 HAVANA gene 1009 20147 . + . FI_gene_label "SLC2A13^ENSG00000151229.13" ; ID "SLC2A13--IL1RAPL1^SLC2A13^ENSG00000151229.13" ; ccdsid "CCDS8736.2" ; exon_id "ENSE00000998418.2" ; exon_number 1 ; gene_id "SLC2A13--IL1RAPL1^SLC2A13^ENSG00000151229.13" ; gene_name SLC2A13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059743.4" ; havana_transcript "OTTHUMT00000132849.3" ; hgnc_id "HGNC:15956" ; level 2 ; orig_coord_info "chr12,40105253,40105808,-" ; protein_id "ENSP00000280871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC2A13--IL1RAPL1^ENST00000280871.9" ; transcript_name "SLC2A13-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC2A13--IL1RAPL1 HAVANA mRNA 1009 20147 . + . FI_gene_label "SLC2A13^ENSG00000151229.13" ; ID "SLC2A13--IL1RAPL1^ENST00000280871.9" ; Parent "SLC2A13--IL1RAPL1^SLC2A13^ENSG00000151229.13" ; ccdsid "CCDS8736.2" ; exon_id "ENSE00000998418.2" ; exon_number 1 ; gene_id "SLC2A13--IL1RAPL1^SLC2A13^ENSG00000151229.13" ; gene_name SLC2A13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059743.4" ; havana_transcript "OTTHUMT00000132849.3" ; hgnc_id "HGNC:15956" ; level 2 ; orig_coord_info "chr12,40105253,40105808,-" ; protein_id "ENSP00000280871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC2A13--IL1RAPL1^ENST00000280871.9" ; transcript_name "SLC2A13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC2A13--IL1RAPL1 ENSEMBL gene 30552 35274 . + . FI_gene_label "IL1RAPL1^ENSG00000169306.10" ; ID "SLC2A13--IL1RAPL1^IL1RAPL1^ENSG00000169306.10" ; exon_id "ENSE00003753222.1" ; exon_number 1 ; gene_id "SLC2A13--IL1RAPL1^IL1RAPL1^ENSG00000169306.10" ; gene_name IL1RAPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021317.2" ; hgnc_id "HGNC:5996" ; level 3 ; orig_coord_info "chrX,29917463,29917596,+" ; protein_id "ENSP00000305200.5" ; tag basic ; transcript_id "SLC2A13--IL1RAPL1^ENST00000302196.5" ; transcript_name "IL1RAPL1-201" ; transcript_support_level 5 ; transcript_type protein_coding
SLC2A13--IL1RAPL1 ENSEMBL mRNA 30552 35274 . + . FI_gene_label "IL1RAPL1^ENSG00000169306.10" ; ID "SLC2A13--IL1RAPL1^ENST00000302196.5" ; Parent "SLC2A13--IL1RAPL1^IL1RAPL1^ENSG00000169306.10" ; exon_id "ENSE00003753222.1" ; exon_number 1 ; gene_id "SLC2A13--IL1RAPL1^IL1RAPL1^ENSG00000169306.10" ; gene_name IL1RAPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021317.2" ; hgnc_id "HGNC:5996" ; level 3 ; orig_coord_info "chrX,29917463,29917596,+" ; protein_id "ENSP00000305200.5" ; tag basic ; transcript_id "SLC2A13--IL1RAPL1^ENST00000302196.5" ; transcript_name "IL1RAPL1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^ENST00000465254.2" ; Parent "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^ENST00000465909.2" ; Parent "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRHDE--CYP27B1 HAVANA gene 38618 43362 . + . FI_gene_label "CYP27B1^ENSG00000111012.10" ; ID "TRHDE--CYP27B1^CYP27B1^ENSG00000111012.10" ; ccdsid "CCDS8954.1" ; exon_id "ENSE00000838996.8" ; exon_number 1 ; gene_id "TRHDE--CYP27B1^CYP27B1^ENSG00000111012.10" ; gene_name CYP27B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170457.4" ; havana_transcript "OTTHUMT00000409248.2" ; hgnc_id "HGNC:2606" ; level 2 ; orig_coord_info "chr12,57766847,57767041,-" ; protein_id "ENSP00000228606.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRHDE--CYP27B1^ENST00000228606.9" ; transcript_name "CYP27B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRHDE--CYP27B1 HAVANA mRNA 38618 43362 . + . FI_gene_label "CYP27B1^ENSG00000111012.10" ; ID "TRHDE--CYP27B1^ENST00000228606.9" ; Parent "TRHDE--CYP27B1^CYP27B1^ENSG00000111012.10" ; ccdsid "CCDS8954.1" ; exon_id "ENSE00000838996.8" ; exon_number 1 ; gene_id "TRHDE--CYP27B1^CYP27B1^ENSG00000111012.10" ; gene_name CYP27B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170457.4" ; havana_transcript "OTTHUMT00000409248.2" ; hgnc_id "HGNC:2606" ; level 2 ; orig_coord_info "chr12,57766847,57767041,-" ; protein_id "ENSP00000228606.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRHDE--CYP27B1^ENST00000228606.9" ; transcript_name "CYP27B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRHDE--CYP27B1 HAVANA gene 1001 34493 . + . FI_gene_label "TRHDE^ENSG00000072657.9" ; ID "TRHDE--CYP27B1^TRHDE^ENSG00000072657.9" ; ccdsid "CCDS9004.1" ; exon_id "ENSE00000937466.8" ; exon_number 1 ; gene_id "TRHDE--CYP27B1^TRHDE^ENSG00000072657.9" ; gene_name TRHDE ; gene_type protein_coding ; havana_gene "OTTHUMG00000169642.5" ; havana_transcript "OTTHUMT00000405380.3" ; hgnc_id "HGNC:30748" ; level 2 ; orig_coord_info "chr12,72272779,72273557,+" ; protein_id "ENSP00000261180.4" ; tag basic appris_principal_1 CCDS ; transcript_id "TRHDE--CYP27B1^ENST00000261180.9" ; transcript_name "TRHDE-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRHDE--CYP27B1 HAVANA mRNA 1001 34493 . + . FI_gene_label "TRHDE^ENSG00000072657.9" ; ID "TRHDE--CYP27B1^ENST00000261180.9" ; Parent "TRHDE--CYP27B1^TRHDE^ENSG00000072657.9" ; ccdsid "CCDS9004.1" ; exon_id "ENSE00000937466.8" ; exon_number 1 ; gene_id "TRHDE--CYP27B1^TRHDE^ENSG00000072657.9" ; gene_name TRHDE ; gene_type protein_coding ; havana_gene "OTTHUMG00000169642.5" ; havana_transcript "OTTHUMT00000405380.3" ; hgnc_id "HGNC:30748" ; level 2 ; orig_coord_info "chr12,72272779,72273557,+" ; protein_id "ENSP00000261180.4" ; tag basic appris_principal_1 CCDS ; transcript_id "TRHDE--CYP27B1^ENST00000261180.9" ; transcript_name "TRHDE-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC007529.2--SOX5 HAVANA gene 1001 7305 . + . FI_gene_label "AC007529.2^ENSG00000283240.1" ; ID "AC007529.2--SOX5^AC007529.2^ENSG00000283240.1" ; exon_id "ENSE00003793637.1" ; exon_number 1 ; gene_id "AC007529.2--SOX5^AC007529.2^ENSG00000283240.1" ; gene_name "AC007529.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168857.3" ; havana_transcript "OTTHUMT00000489897.1" ; level 2 ; orig_coord_info "chr12,16661766,16661973,+" ; tag RNA_Seq_supported_only basic ; transcript_id "AC007529.2--SOX5^ENST00000637435.1" ; transcript_name "AC007529.2-201" ; transcript_support_level 5 ; transcript_type lncRNA
AC007529.2--SOX5 HAVANA RNA 1001 7305 . + . FI_gene_label "AC007529.2^ENSG00000283240.1" ; ID "AC007529.2--SOX5^ENST00000637435.1" ; Parent "AC007529.2--SOX5^AC007529.2^ENSG00000283240.1" ; exon_id "ENSE00003793637.1" ; exon_number 1 ; gene_id "AC007529.2--SOX5^AC007529.2^ENSG00000283240.1" ; gene_name "AC007529.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168857.3" ; havana_transcript "OTTHUMT00000489897.1" ; level 2 ; orig_coord_info "chr12,16661766,16661973,+" ; tag RNA_Seq_supported_only basic ; transcript_id "AC007529.2--SOX5^ENST00000637435.1" ; transcript_name "AC007529.2-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC107419.1--PHEX HAVANA gene 1010 17861 . + . FI_gene_label "AC107419.1^ENSG00000228933.8" ; ID "AC107419.1--PHEX^AC107419.1^ENSG00000228933.8" ; exon_id "ENSE00001612469.1" ; exon_number 1 ; gene_id "AC107419.1--PHEX^AC107419.1^ENSG00000228933.8" ; gene_name "AC107419.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000021298.10" ; havana_transcript "OTTHUMT00000056136.1" ; level 2 ; orig_coord_info "chrX,27398937,27398997,-" ; tag basic ; transcript_id "AC107419.1--PHEX^ENST00000422048.5" ; transcript_name "AC107419.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
AC107419.1--PHEX HAVANA RNA 1010 17861 . + . FI_gene_label "AC107419.1^ENSG00000228933.8" ; ID "AC107419.1--PHEX^ENST00000422048.5" ; Parent "AC107419.1--PHEX^AC107419.1^ENSG00000228933.8" ; exon_id "ENSE00001612469.1" ; exon_number 1 ; gene_id "AC107419.1--PHEX^AC107419.1^ENSG00000228933.8" ; gene_name "AC107419.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000021298.10" ; havana_transcript "OTTHUMT00000056136.1" ; level 2 ; orig_coord_info "chrX,27398937,27398997,-" ; tag basic ; transcript_id "AC107419.1--PHEX^ENST00000422048.5" ; transcript_name "AC107419.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
ETNK1--AC087235.1 HAVANA gene 28042 30370 . + . FI_gene_label "AC087235.1^ENSG00000115934.11" ; ID "ETNK1--AC087235.1^AC087235.1^ENSG00000115934.11" ; exon_id "ENSE00002222490.1" ; exon_number 1 ; gene_id "ETNK1--AC087235.1^AC087235.1^ENSG00000115934.11" ; gene_name "AC087235.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169041.1" ; havana_transcript "OTTHUMT00000402056.1" ; level 2 ; orig_coord_info "chr12,23251461,23251499,-" ; tag basic ; transcript_id "ETNK1--AC087235.1^ENST00000538297.1" ; transcript_name "AC087235.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
ETNK1--AC087235.1 HAVANA RNA 28042 30370 . + . FI_gene_label "AC087235.1^ENSG00000115934.11" ; ID "ETNK1--AC087235.1^ENST00000538297.1" ; Parent "ETNK1--AC087235.1^AC087235.1^ENSG00000115934.11" ; exon_id "ENSE00002222490.1" ; exon_number 1 ; gene_id "ETNK1--AC087235.1^AC087235.1^ENSG00000115934.11" ; gene_name "AC087235.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169041.1" ; havana_transcript "OTTHUMT00000402056.1" ; level 2 ; orig_coord_info "chr12,23251461,23251499,-" ; tag basic ; transcript_id "ETNK1--AC087235.1^ENST00000538297.1" ; transcript_name "AC087235.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
ITPR2--AC007529.2 HAVANA gene 70020 76324 . + . FI_gene_label "AC007529.2^ENSG00000283240.1" ; ID "ITPR2--AC007529.2^AC007529.2^ENSG00000283240.1" ; exon_id "ENSE00003793637.1" ; exon_number 1 ; gene_id "ITPR2--AC007529.2^AC007529.2^ENSG00000283240.1" ; gene_name "AC007529.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168857.3" ; havana_transcript "OTTHUMT00000489897.1" ; level 2 ; orig_coord_info "chr12,16661766,16661973,+" ; tag RNA_Seq_supported_only basic ; transcript_id "ITPR2--AC007529.2^ENST00000637435.1" ; transcript_name "AC007529.2-201" ; transcript_support_level 5 ; transcript_type lncRNA
ITPR2--AC007529.2 HAVANA RNA 70020 76324 . + . FI_gene_label "AC007529.2^ENSG00000283240.1" ; ID "ITPR2--AC007529.2^ENST00000637435.1" ; Parent "ITPR2--AC007529.2^AC007529.2^ENSG00000283240.1" ; exon_id "ENSE00003793637.1" ; exon_number 1 ; gene_id "ITPR2--AC007529.2^AC007529.2^ENSG00000283240.1" ; gene_name "AC007529.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168857.3" ; havana_transcript "OTTHUMT00000489897.1" ; level 2 ; orig_coord_info "chr12,16661766,16661973,+" ; tag RNA_Seq_supported_only basic ; transcript_id "ITPR2--AC007529.2^ENST00000637435.1" ; transcript_name "AC007529.2-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
ITPR2--SKP1P2 HAVANA gene 70020 70830 . + . FI_gene_label "SKP1P2^ENSG00000256211.1" ; ID "ITPR2--SKP1P2^SKP1P2^ENSG00000256211.1" ; exon_id "ENSE00002240716.1" ; exon_number 1 ; gene_id "ITPR2--SKP1P2^SKP1P2^ENSG00000256211.1" ; gene_name SKP1P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000168858.1" ; havana_transcript "OTTHUMT00000401403.1" ; hgnc_id "HGNC:10900" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,16989126,16989563,+" ; tag pseudo_consens basic ; transcript_id "ITPR2--SKP1P2^ENST00000444513.2" ; transcript_name "SKP1P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ITPR2--SKP1P2 HAVANA RNA 70020 70830 . + . FI_gene_label "SKP1P2^ENSG00000256211.1" ; ID "ITPR2--SKP1P2^ENST00000444513.2" ; Parent "ITPR2--SKP1P2^SKP1P2^ENSG00000256211.1" ; exon_id "ENSE00002240716.1" ; exon_number 1 ; gene_id "ITPR2--SKP1P2^SKP1P2^ENSG00000256211.1" ; gene_name SKP1P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000168858.1" ; havana_transcript "OTTHUMT00000401403.1" ; hgnc_id "HGNC:10900" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,16989126,16989563,+" ; tag pseudo_consens basic ; transcript_id "ITPR2--SKP1P2^ENST00000444513.2" ; transcript_name "SKP1P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
PHEX--AC004470.2 HAVANA gene 33760 38587 . + . FI_gene_label "AC004470.2^ENSG00000288546.1" ; ID "PHEX--AC004470.2^AC004470.2^ENSG00000288546.1" ; exon_id "ENSE00001752927.1" ; exon_number 1 ; gene_id "PHEX--AC004470.2^AC004470.2^ENSG00000288546.1" ; gene_name "AC004470.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000021249.3" ; havana_transcript "OTTHUMT00000056044.1" ; level 2 ; orig_coord_info "chrX,23064038,23064119,-" ; tag basic ; transcript_id "PHEX--AC004470.2^ENST00000455399.1" ; transcript_name "AC004470.2-202" ; transcript_support_level 3 ; transcript_type lncRNA
PHEX--AC004470.2 HAVANA RNA 33760 38587 . + . FI_gene_label "AC004470.2^ENSG00000288546.1" ; ID "PHEX--AC004470.2^ENST00000455399.1" ; Parent "PHEX--AC004470.2^AC004470.2^ENSG00000288546.1" ; exon_id "ENSE00001752927.1" ; exon_number 1 ; gene_id "PHEX--AC004470.2^AC004470.2^ENSG00000288546.1" ; gene_name "AC004470.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000021249.3" ; havana_transcript "OTTHUMT00000056044.1" ; level 2 ; orig_coord_info "chrX,23064038,23064119,-" ; tag basic ; transcript_id "PHEX--AC004470.2^ENST00000455399.1" ; transcript_name "AC004470.2-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
SKP1P2--SOX5 HAVANA gene 1001 1811 . + . FI_gene_label "SKP1P2^ENSG00000256211.1" ; ID "SKP1P2--SOX5^SKP1P2^ENSG00000256211.1" ; exon_id "ENSE00002240716.1" ; exon_number 1 ; gene_id "SKP1P2--SOX5^SKP1P2^ENSG00000256211.1" ; gene_name SKP1P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000168858.1" ; havana_transcript "OTTHUMT00000401403.1" ; hgnc_id "HGNC:10900" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,16989126,16989563,+" ; tag pseudo_consens basic ; transcript_id "SKP1P2--SOX5^ENST00000444513.2" ; transcript_name "SKP1P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
SKP1P2--SOX5 HAVANA RNA 1001 1811 . + . FI_gene_label "SKP1P2^ENSG00000256211.1" ; ID "SKP1P2--SOX5^ENST00000444513.2" ; Parent "SKP1P2--SOX5^SKP1P2^ENSG00000256211.1" ; exon_id "ENSE00002240716.1" ; exon_number 1 ; gene_id "SKP1P2--SOX5^SKP1P2^ENSG00000256211.1" ; gene_name SKP1P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000168858.1" ; havana_transcript "OTTHUMT00000401403.1" ; hgnc_id "HGNC:10900" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,16989126,16989563,+" ; tag pseudo_consens basic ; transcript_id "SKP1P2--SOX5^ENST00000444513.2" ; transcript_name "SKP1P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
447 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
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--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
809 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 43 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
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------ End checks (done in 0 second) ------
GFF3 file parsed