Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/0890ea4d1c061659e78fdbdf386780/659_b4x-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/e81ad784d0cde6232826146d1c2d5b/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/e81ad784d0cde6232826146d1c2d5b/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/0890ea4d1c061659e78fdbdf386780/659_b4x-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/38f613398bb98d0c78bf28614199fa/659_b4x-T1-TRNA-1_B23MHV2LT4_1.Chimeric.out.junction ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.z8EdSJwVDa/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary -sample contains 71753783 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir -J /tmp/nxf.z8EdSJwVDa/659_b4x-T1-TRNA-1_B23MHV2LT4_1.Chimeric.out.junction -O /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.z8EdSJwVDa/659_b4x-T1-TRNA-1_B23MHV2LT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=54545.45/min [20000], rate=60000.00/min [30000], rate=64285.71/min [40000], rate=66666.67/min [50000], rate=63829.79/min [60000], rate=67924.53/min [70000], rate=71186.44/min [80000], rate=66666.67/min [90000], rate=60674.16/min [100000], rate=56603.77/min [110000], rate=54545.45/min [120000], rate=53731.34/min [130000], rate=53793.10/min [140000], rate=52830.19/min [150000], rate=52941.18/min [160000], rate=53038.67/min [170000], rate=53125.00/min [180000], rate=53201.97/min [190000], rate=53271.03/min [200000], rate=53811.66/min [210000], rate=54545.45/min [220000], rate=56170.21/min [230000], rate=57500.00/min [240000], rate=58536.59/min [250000], rate=59523.81/min [260000], rate=59770.11/min [270000], rate=60447.76/min [280000], rate=61313.87/min [290000], rate=62142.86/min [300000], rate=62717.77/min [310000], rate=63481.23/min [320000], rate=64864.86/min [330000], rate=66442.95/min [340000], rate=68456.38/min [350000], rate=70234.11/min [360000], rate=72000.00/min [370000], rate=73754.15/min [380000], rate=75000.00/min [390000], rate=75483.87/min [400000], rate=76433.12/min [410000], rate=77848.10/min [420000], rate=78018.58/min [430000], rate=78419.45/min [440000], rate=79518.07/min [450000], rate=80118.69/min [460000], rate=80232.56/min [470000], rate=81502.89/min [480000], rate=82997.12/min [490000], rate=84726.22/min [500000], rate=86206.90/min [510000], rate=87679.08/min [520000], rate=88888.89/min [530000], rate=88826.82/min [540000], rate=89256.20/min [550000], rate=89673.91/min [560000], rate=91056.91/min [570000], rate=91935.48/min [580000], rate=92063.49/min [590000], rate=92428.20/min [600000], rate=93023.26/min [610000], rate=92893.40/min [620000], rate=93233.08/min [630000], rate=93564.36/min [640000], rate=94348.89/min [650000], rate=93975.90/min [660000], rate=94285.71/min [670000], rate=94366.20/min [680000], rate=94009.22/min [690000], rate=93665.16/min [700000], rate=93333.33/min [710000], rate=93626.37/min [720000], rate=93506.49/min [730000], rate=93589.74/min [740000], rate=92116.18/min [750000], rate=90543.26/min [760000], rate=89411.76/min [770000], rate=88000.00/min [780000], rate=86827.46/min [790000], rate=86181.82/min [800000], rate=85561.50/min [810000], rate=85113.84/min [820000], rate=84681.58/min -building interval tree based on /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.10 min). -mapping reads to genes [10000], rate=85714.29/min [20000], rate=75000.00/min [30000], rate=62068.97/min [40000], rate=54545.45/min [50000], rate=54545.45/min [60000], rate=54545.45/min [70000], rate=55263.16/min [80000], rate=58536.59/min [90000], rate=61363.64/min [100000], rate=64516.13/min [110000], rate=64077.67/min [120000], rate=60504.20/min [130000], rate=59541.98/min [140000], rate=60000.00/min [150000], rate=60402.68/min [160000], rate=60759.49/min [170000], rate=61818.18/min [180000], rate=62427.75/min [190000], rate=62983.43/min [200000], rate=64171.12/min [210000], rate=65625.00/min [220000], rate=66000.00/min [230000], rate=65402.84/min [240000], rate=64864.86/min [250000], rate=64377.68/min [260000], rate=63414.63/min [270000], rate=62790.70/min [280000], rate=62453.53/min [290000], rate=62589.93/min [300000], rate=63157.89/min [310000], rate=63698.63/min [320000], rate=64214.05/min [330000], rate=64918.03/min [340000], rate=65384.62/min [350000], rate=64615.38/min [360000], rate=63905.33/min [370000], rate=63247.86/min [380000], rate=63157.89/min [390000], rate=62734.58/min [400000], rate=62663.19/min [410000], rate=62436.55/min [420000], rate=62222.22/min [430000], rate=62318.84/min [440000], rate=62117.65/min [450000], rate=62211.98/min [460000], rate=62585.03/min [470000], rate=62946.43/min [480000], rate=63157.89/min [490000], rate=63636.36/min [500000], rate=63965.88/min [510000], rate=64556.96/min [520000], rate=65000.00/min [530000], rate=65297.74/min [540000], rate=65060.24/min [550000], rate=64579.26/min [560000], rate=64244.74/min [570000], rate=63925.23/min [580000], rate=63736.26/min [590000], rate=63898.92/min [600000], rate=64171.12/min [610000], rate=64664.31/min [620000], rate=65148.86/min [630000], rate=65284.97/min [640000], rate=64974.62/min [650000], rate=64676.62/min [660000], rate=64600.33/min [670000], rate=64526.48/min [680000], rate=64659.27/min [690000], rate=64890.28/min [700000], rate=65318.82/min [710000], rate=65842.35/min [720000], rate=66156.20/min [730000], rate=66363.64/min [740000], rate=66566.72/min [750000], rate=66469.72/min [760000], rate=66569.34/min [770000], rate=66570.61/min [780000], rate=66571.83/min [790000], rate=66760.56/min [800000], rate=66945.61/min [810000], rate=67313.02/min [820000], rate=67582.42/min -building interval tree based on /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=150000.00/min [20000], rate=133333.33/min [30000], rate=163636.36/min [40000], rate=150000.00/min [50000], rate=150000.00/min [60000], rate=150000.00/min [70000], rate=161538.46/min [80000], rate=165517.24/min [90000], rate=145945.95/min [100000], rate=146341.46/min [110000], rate=143478.26/min [120000], rate=135849.06/min [130000], rate=136842.11/min [140000], rate=137704.92/min [150000], rate=147540.98/min [160000], rate=147692.31/min [170000], rate=150000.00/min [180000], rate=150000.00/min [190000], rate=152000.00/min [200000], rate=150000.00/min [210000], rate=150000.00/min [220000], rate=150000.00/min [230000], rate=150000.00/min [240000], rate=150000.00/min [250000], rate=150000.00/min [260000], rate=151456.31/min [270000], rate=148623.85/min [280000], rate=148672.57/min [290000], rate=147457.63/min [300000], rate=135338.35/min [310000], rate=122368.42/min [320000], rate=112280.70/min [330000], rate=104210.53/min [340000], rate=98550.72/min [350000], rate=93750.00/min [360000], rate=89626.56/min [370000], rate=85714.29/min [380000], rate=82608.70/min [390000], rate=80412.37/min [400000], rate=79207.92/min [410000], rate=77848.10/min [420000], rate=76829.27/min [430000], rate=75882.35/min [440000], rate=75213.68/min [450000], rate=74792.24/min [460000], rate=74193.55/min [470000], rate=73437.50/min [480000], rate=72911.39/min [490000], rate=72592.59/min [500000], rate=72289.16/min [510000], rate=72169.81/min [520000], rate=72055.43/min [530000], rate=72602.74/min [540000], rate=72972.97/min [550000], rate=73496.66/min [560000], rate=73043.48/min [570000], rate=72765.96/min [580000], rate=72803.35/min [590000], rate=72839.51/min [600000], rate=72874.49/min [610000], rate=73053.89/min [620000], rate=73372.78/min [630000], rate=72832.37/min [640000], rate=72045.03/min [650000], rate=71428.57/min [660000], rate=70462.63/min [670000], rate=69913.04/min [680000], rate=69387.76/min [690000], rate=69115.19/min [700000], rate=68739.77/min [710000], rate=68488.75/min [720000], rate=68354.43/min [730000], rate=68437.50/min [740000], rate=68518.52/min [750000], rate=68702.29/min [760000], rate=68571.43/min [770000], rate=67941.18/min [780000], rate=67435.16/min [790000], rate=66949.15/min [800000], rate=66574.20/min [810000], rate=66393.44/min [820000], rate=66129.03/min -building interval tree based on /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=60000.00/min [20000], rate=66666.67/min [30000], rate=72000.00/min [40000], rate=75000.00/min [50000], rate=78947.37/min [60000], rate=83720.93/min [70000], rate=84000.00/min [80000], rate=82758.62/min [90000], rate=83076.92/min [100000], rate=84507.04/min [110000], rate=84615.38/min [120000], rate=85714.29/min [130000], rate=85714.29/min [140000], rate=82352.94/min [150000], rate=81081.08/min [160000], rate=80672.27/min [170000], rate=80314.96/min [180000], rate=81203.01/min [190000], rate=82608.70/min [200000], rate=83916.08/min [210000], rate=84563.76/min [220000], rate=83544.30/min [230000], rate=82634.73/min [240000], rate=81355.93/min [250000], rate=81521.74/min [260000], rate=80829.02/min [270000], rate=80597.01/min [280000], rate=81553.40/min [290000], rate=82464.45/min [300000], rate=83720.93/min [310000], rate=83783.78/min [320000], rate=81702.13/min [330000], rate=80816.33/min [340000], rate=79069.77/min [350000], rate=78066.91/min [360000], rate=77419.35/min [370000], rate=76816.61/min [380000], rate=76254.18/min [390000], rate=75728.16/min [400000], rate=75471.70/min [410000], rate=75229.36/min [420000], rate=74556.21/min [430000], rate=74351.59/min [440000], rate=73949.58/min [450000], rate=73972.60/min [460000], rate=73404.26/min [470000], rate=73056.99/min [480000], rate=72911.39/min [490000], rate=72592.59/min [500000], rate=72463.77/min [510000], rate=72340.43/min [520000], rate=72389.79/min [530000], rate=72768.88/min [540000], rate=73469.39/min [550000], rate=72527.47/min [560000], rate=71186.44/min [570000], rate=70370.37/min [580000], rate=69600.00/min [590000], rate=69005.85/min [600000], rate=68571.43/min [610000], rate=68156.42/min [620000], rate=67883.21/min [630000], rate=67500.00/min [640000], rate=67250.44/min [650000], rate=67125.65/min [660000], rate=67232.60/min [670000], rate=67449.66/min [680000], rate=67774.09/min [690000], rate=67980.30/min [700000], rate=68181.82/min [710000], rate=68709.68/min [720000], rate=68789.81/min [730000], rate=69194.31/min [740000], rate=68730.65/min [750000], rate=68181.82/min [760000], rate=67555.56/min [770000], rate=66956.52/min [780000], rate=66571.83/min [790000], rate=66201.12/min [800000], rate=65843.62/min [810000], rate=65587.04/min [820000], rate=65338.65/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir --filt_file /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 0.00 reads per min processed... 12000000.00 reads per min processed... 9000000.00 reads per min processed... 6000000.00 reads per min processed... 5000000.00 reads per min processed... 4500000.00 reads per min processed... 4200000.00 reads per min processed... 4363636.36 reads per min processed... 4153846.15 reads per min processed... 4000000.00 reads per min processed... 3666666.67 reads per min processed... 3789473.68 reads per min processed... 3714285.71 reads per min processed... 3652173.91 reads per min processed... 3600000.00 reads per min processed... 3692307.69 reads per min processed... 3777777.78 reads per min processed... 3857142.86 reads per min processed... 3931034.48 reads per min processed... 4000000.00 reads per min processed... 4064516.13 reads per min processed... 4000000.00 reads per min processed... 3942857.14 reads per min processed... 4000000.00 reads per min processed... 3947368.42 reads per min processed... 3900000.00 reads per min processed... 3951219.51 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.z8EdSJwVDa/659_b4x-T1-TRNA-1_B23MHV2LT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -80908.963518 EM: Round [1] log likelihood: -80848.980418 EM: Round [2] log likelihood: -80824.091384 EM: Round [3] log likelihood: -80811.587975 EM: Round [4] log likelihood: -80804.904574 EM: Round [5] log likelihood: -80801.245523 EM: Round [6] log likelihood: -80799.201313 EM: Round [7] log likelihood: -80798.029402 EM: Round [8] log likelihood: -80797.336126 EM: Round [9] log likelihood: -80796.911493 EM: Round [10] log likelihood: -80796.641874 EM: Round [11] log likelihood: -80796.464463 EM: Round [12] log likelihood: -80796.343641 EM: Round [13] log likelihood: -80796.258641 EM: Round [14] log likelihood: -80796.196999 EM: Round [15] log likelihood: -80796.151021 EM: Round [16] log likelihood: -80796.115828 EM: Round [17] log likelihood: -80796.088243 EM: Round [18] log likelihood: -80796.066150 EM: Round [19] log likelihood: -80796.048106 EM: Round [20] log likelihood: -80796.033109 EM: Round [21] log likelihood: -80796.020448 EM: Round [22] log likelihood: -80796.009610 EM: Round [23] log likelihood: -80796.000220 EM: Round [24] log likelihood: -80795.991995 EM: Round [25] log likelihood: -80795.984725 EM: Round [26] log likelihood: -80795.978244 EM: Round [27] log likelihood: -80795.972426 EM: Round [28] log likelihood: -80795.967169 EM: Round [29] log likelihood: -80795.962393 EM: Round [30] log likelihood: -80795.958031 EM: Round [31] log likelihood: -80795.954031 EM: Round [32] log likelihood: -80795.950348 EM: Round [33] log likelihood: -80795.946944 EM: Round [34] log likelihood: -80795.943787 EM: Round [35] log likelihood: -80795.940853 EM: Round [36] log likelihood: -80795.938117 EM: Round [37] log likelihood: -80795.935560 EM: Round [38] log likelihood: -80795.933166 EM: Round [39] log likelihood: -80795.930919 EM: Round [40] log likelihood: -80795.928806 EM: Round [41] log likelihood: -80795.926817 EM: Round [42] log likelihood: -80795.924941 EM: Round [43] log likelihood: -80795.923170 EM: Round [44] log likelihood: -80795.921495 EM: Round [45] log likelihood: -80795.919910 EM: Round [46] log likelihood: -80795.918409 EM: Round [47] log likelihood: -80795.916985 EM: Round [48] log likelihood: -80795.915633 EM: Round [49] log likelihood: -80795.914350 EM: Round [50] log likelihood: -80795.913130 EM: Round [51] log likelihood: -80795.911970 EM: Round [52] log likelihood: -80795.910867 EM: Round [53] log likelihood: -80795.909816 EM: Round [54] log likelihood: -80795.908816 EM: Round [55] log likelihood: -80795.907863 EM: Round [56] log likelihood: -80795.906955 EM: Round [57] log likelihood: -80795.906090 EM: Round [58] log likelihood: -80795.905265 EM: Round [59] log likelihood: -80795.904478 EM: Round [60] log likelihood: -80795.903727 EM: Round [61] log likelihood: -80795.903011 EM: Round [62] log likelihood: -80795.902328 EM: Round [63] log likelihood: -80795.901675 EM: Round [64] log likelihood: -80795.901053 EM: Round [65] log likelihood: -80795.900459 EM: Round [66] log likelihood: -80795.899892 EM: Round [67] log likelihood: -80795.899351 EM: Round [68] log likelihood: -80795.898834 EM: Round [69] log likelihood: -80795.898340 EM: Round [70] log likelihood: -80795.897869 EM: Round [71] log likelihood: -80795.897419 EM: Round [72] log likelihood: -80795.896990 EM: Round [73] log likelihood: -80795.896580 EM: Round [74] log likelihood: -80795.896188 EM: Round [75] log likelihood: -80795.895814 EM: Round [76] log likelihood: -80795.895457 EM: Round [77] log likelihood: -80795.895116 EM: Round [78] log likelihood: -80795.894790 EM: Round [79] log likelihood: -80795.894479 EM: Round [80] log likelihood: -80795.894182 EM: Round [81] log likelihood: -80795.893899 EM: Round [82] log likelihood: -80795.893628 EM: Round [83] log likelihood: -80795.893369 EM: Round [84] log likelihood: -80795.893122 EM: Round [85] log likelihood: -80795.892887 EM: Round [86] log likelihood: -80795.892662 EM: Round [87] log likelihood: -80795.892447 EM: Round [88] log likelihood: -80795.892241 EM: Round [89] log likelihood: -80795.892046 EM: Round [90] log likelihood: -80795.891859 EM: Round [91] log likelihood: -80795.891680 EM: Round [92] log likelihood: -80795.891509 EM: Round [93] log likelihood: -80795.891347 EM: Round [94] log likelihood: -80795.891191 EM: Round [95] log likelihood: -80795.891043 EM: Round [96] log likelihood: -80795.890901 EM: Round [97] log likelihood: -80795.890766 EM: Round [98] log likelihood: -80795.890637 EM: Round [99] log likelihood: -80795.890514 EM: Round [100] log likelihood: -80795.890396 EM: Round [101] log likelihood: -80795.890284 EM: Round [102] log likelihood: -80795.890177 EM: Round [103] log likelihood: -80795.890074 EM: Round [104] log likelihood: -80795.889977 EM: Stopping iterations at round 104 due to insufficient improvement in likelihood. EM: Starting log likelihood: -80883.550437 EM: Round [1] log likelihood: -80830.645344 EM: Round [2] log likelihood: -80809.442420 EM: Round [3] log likelihood: -80798.956954 EM: Round [4] log likelihood: -80793.380104 EM: Round [5] log likelihood: -80790.324743 EM: Round [6] log likelihood: -80788.611697 EM: Round [7] log likelihood: -80787.624849 EM: Round [8] log likelihood: -80787.037871 EM: Round [9] log likelihood: -80786.676258 EM: Round [10] log likelihood: -80786.445229 EM: Round [11] log likelihood: -80786.292191 EM: Round [12] log likelihood: -80786.187208 EM: Round [13] log likelihood: -80786.112769 EM: Round [14] log likelihood: -80786.058333 EM: Round [15] log likelihood: -80786.017375 EM: Round [16] log likelihood: -80785.985744 EM: Round [17] log likelihood: -80785.960730 EM: Round [18] log likelihood: -80785.940522 EM: Round [19] log likelihood: -80785.923881 EM: Round [20] log likelihood: -80785.909941 EM: Round [21] log likelihood: -80785.898088 EM: Round [22] log likelihood: -80785.887873 EM: Round [23] log likelihood: -80785.878969 EM: Round [24] log likelihood: -80785.871128 EM: Round [25] log likelihood: -80785.864161 EM: Round [26] log likelihood: -80785.857923 EM: Round [27] log likelihood: -80785.852300 EM: Round [28] log likelihood: -80785.847200 EM: Round [29] log likelihood: -80785.842550 EM: Round [30] log likelihood: -80785.838291 EM: Round [31] log likelihood: -80785.834373 EM: Round [32] log likelihood: -80785.830754 EM: Round [33] log likelihood: -80785.827402 EM: Round [34] log likelihood: -80785.824286 EM: Round [35] log likelihood: -80785.821382 EM: Round [36] log likelihood: -80785.818669 EM: Round [37] log likelihood: -80785.816129 EM: Round [38] log likelihood: -80785.813745 EM: Round [39] log likelihood: -80785.811504 EM: Round [40] log likelihood: -80785.809393 EM: Round [41] log likelihood: -80785.807403 EM: Round [42] log likelihood: -80785.805523 EM: Round [43] log likelihood: -80785.803745 EM: Round [44] log likelihood: -80785.802062 EM: Round [45] log likelihood: -80785.800467 EM: Round [46] log likelihood: -80785.798953 EM: Round [47] log likelihood: -80785.797517 EM: Round [48] log likelihood: -80785.796152 EM: Round [49] log likelihood: -80785.794855 EM: Round [50] log likelihood: -80785.793620 EM: Round [51] log likelihood: -80785.792446 EM: Round [52] log likelihood: -80785.791327 EM: Round [53] log likelihood: -80785.790261 EM: Round [54] log likelihood: -80785.789246 EM: Round [55] log likelihood: -80785.788278 EM: Round [56] log likelihood: -80785.787355 EM: Round [57] log likelihood: -80785.786474 EM: Round [58] log likelihood: -80785.785634 EM: Round [59] log likelihood: -80785.784833 EM: Round [60] log likelihood: -80785.784068 EM: Round [61] log likelihood: -80785.783338 EM: Round [62] log likelihood: -80785.782641 EM: Round [63] log likelihood: -80785.781976 EM: Round [64] log likelihood: -80785.781340 EM: Round [65] log likelihood: -80785.780734 EM: Round [66] log likelihood: -80785.780155 EM: Round [67] log likelihood: -80785.779601 EM: Round [68] log likelihood: -80785.779073 EM: Round [69] log likelihood: -80785.778569 EM: Round [70] log likelihood: -80785.778087 EM: Round [71] log likelihood: -80785.777627 EM: Round [72] log likelihood: -80785.777187 EM: Round [73] log likelihood: -80785.776767 EM: Round [74] log likelihood: -80785.776366 EM: Round [75] log likelihood: -80785.775983 EM: Round [76] log likelihood: -80785.775618 EM: Round [77] log likelihood: -80785.775268 EM: Round [78] log likelihood: -80785.774935 EM: Round [79] log likelihood: -80785.774616 EM: Round [80] log likelihood: -80785.774312 EM: Round [81] log likelihood: -80785.774021 EM: Round [82] log likelihood: -80785.773744 EM: Round [83] log likelihood: -80785.773479 EM: Round [84] log likelihood: -80785.773226 EM: Round [85] log likelihood: -80785.772984 EM: Round [86] log likelihood: -80785.772753 EM: Round [87] log likelihood: -80785.772533 EM: Round [88] log likelihood: -80785.772323 EM: Round [89] log likelihood: -80785.772122 EM: Round [90] log likelihood: -80785.771930 EM: Round [91] log likelihood: -80785.771747 EM: Round [92] log likelihood: -80785.771572 EM: Round [93] log likelihood: -80785.771405 EM: Round [94] log likelihood: -80785.771245 EM: Round [95] log likelihood: -80785.771093 EM: Round [96] log likelihood: -80785.770948 EM: Round [97] log likelihood: -80785.770809 EM: Round [98] log likelihood: -80785.770677 EM: Round [99] log likelihood: -80785.770550 EM: Round [100] log likelihood: -80785.770429 EM: Round [101] log likelihood: -80785.770314 EM: Round [102] log likelihood: -80785.770204 EM: Round [103] log likelihood: -80785.770099 EM: Round [104] log likelihood: -80785.769999 EM: Round [105] log likelihood: -80785.769903 EM: Stopping iterations at round 105 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 71753783 > /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir > /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir --annotate /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir -done, see /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 759, filtered: 5757) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.z8EdSJwVDa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.z8EdSJwVDa/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [ENSG00000181126.13] WARNING, no entry stored in dbm for [ENSG00000229739.4] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000226049.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000283674.3] WARNING, no entry stored in dbm for [ENSG00000248618.1] WARNING, no entry stored in dbm for [ENSG00000283674.3] WARNING, no entry stored in dbm for [ENSG00000248618.1] WARNING, no entry stored in dbm for [ENSG00000282458.1] WARNING, no entry stored in dbm for [ENSG00000234769.7] WARNING, no entry stored in dbm for [ENSG00000280136.2] WARNING, no entry stored in dbm for [ENSG00000236116.1] WARNING, no entry stored in dbm for [ENSG00000067601.8] WARNING, no entry stored in dbm for [ENSG00000239335.4] WARNING, no entry stored in dbm for [ENSG00000227392.2] WARNING, no entry stored in dbm for [ENSG00000248205.1] WARNING, no entry stored in dbm for [ENSG00000233303.1] WARNING, no entry stored in dbm for [ENSG00000248223.1] WARNING, no entry stored in dbm for [ENSG00000234152.1] WARNING, no entry stored in dbm for [ENSG00000234715.2] WARNING, no entry stored in dbm for [ENSG00000205534.6] WARNING, no entry stored in dbm for [ENSG00000261499.2] WARNING, no entry stored in dbm for [ENSG00000286220.1] WARNING, no entry stored in dbm for [ENSG00000230817.6] WARNING, no entry stored in dbm for [ENSG00000237004.4] WARNING, no entry stored in dbm for [ENSG00000277977.1] WARNING, no entry stored in dbm for [ENSG00000288091.1] WARNING, no entry stored in dbm for [ENSG00000227197.1] WARNING, no entry stored in dbm for [ENSG00000261971.8] WARNING, no entry stored in dbm for [ENSG00000236869.1] WARNING, no entry stored in dbm for [ENSG00000253559.1] WARNING, no entry stored in dbm for [ENSG00000267598.1] WARNING, no entry stored in dbm for [ENSG00000200434.1] WARNING, no entry stored in dbm for [ENSG00000277739.1] WARNING, no entry stored in dbm for [ENSG00000283568.1] WARNING, no entry stored in dbm for [ENSG00000241035.2] WARNING, no entry stored in dbm for [ENSG00000233783.8] WARNING, no entry stored in dbm for [ENSG00000235954.7] WARNING, no entry stored in dbm for [ENSG00000251249.2] WARNING, no entry stored in dbm for [ENSG00000205583.13] WARNING, no entry stored in dbm for [ENSG00000241657.1] WARNING, no entry stored in dbm for [ENSG00000266651.1] WARNING, no entry stored in dbm for [ENSG00000280166.1] WARNING, no entry stored in dbm for [ENSG00000232600.3] WARNING, no entry stored in dbm for [ENSG00000226674.11] WARNING, no entry stored in dbm for [ENSG00000239899.3] WARNING, no entry stored in dbm for [ENSG00000226674.11] WARNING, no entry stored in dbm for [ENSG00000265735.2] WARNING, no entry stored in dbm for [ENSG00000234911.2] WARNING, no entry stored in dbm for [ENSG00000247708.8] WARNING, no entry stored in dbm for [ENSG00000279080.1] WARNING, no entry stored in dbm for [ENSG00000205482.9] WARNING, no entry stored in dbm for [ENSG00000225046.2] WARNING, no entry stored in dbm for [ENSG00000248727.6] WARNING, no entry stored in dbm for [ENSG00000287755.1] WARNING, no entry stored in dbm for [ENSG00000260727.2] WARNING, no entry stored in dbm for [ENSG00000260727.2] WARNING, no entry stored in dbm for [ENSG00000285051.2] WARNING, no entry stored in dbm for [ENSG00000224081.9] WARNING, no entry stored in dbm for [ENSG00000258412.1] WARNING, no entry stored in dbm for [ENSG00000283259.1] WARNING, no entry stored in dbm for [ENSG00000229930.1] WARNING, no entry stored in dbm for [ENSG00000287000.1] WARNING, no entry stored in dbm for [ENSG00000237984.3] WARNING, no entry stored in dbm for [ENSG00000230629.2] WARNING, no entry stored in dbm for [ENSG00000224631.4] WARNING, no entry stored in dbm for [ENSG00000060303.5] WARNING, no entry stored in dbm for [ENSG00000060303.5] WARNING, no entry stored in dbm for [ENSG00000241891.1] WARNING, no entry stored in dbm for [ENSG00000237550.5] WARNING, no entry stored in dbm for [ENSG00000242071.3] WARNING, no entry stored in dbm for [ENSG00000220370.1] WARNING, no entry stored in dbm for [ENSG00000241431.1] WARNING, no entry stored in dbm for [ENSG00000230636.1] WARNING, no entry stored in dbm for [ENSG00000235619.1] WARNING, no entry stored in dbm for [ENSG00000228007.1] WARNING, no entry 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no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000201185.1] WARNING, no entry stored in dbm for [ENSG00000201185.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000251823.2] WARNING, no entry stored in dbm for [ENSG00000251823.2] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000201321.1] WARNING, no entry stored in dbm for [ENSG00000201321.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000200343.1] WARNING, no entry stored in dbm for [ENSG00000200343.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000202521.1] WARNING, no entry stored in dbm for [ENSG00000202521.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000200624.1] WARNING, no entry stored in dbm for [ENSG00000200624.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000199396.1] WARNING, no entry stored in dbm for [ENSG00000199396.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000200381.1] WARNING, no entry stored in dbm for [ENSG00000200381.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000199337.1] WARNING, no entry stored in dbm for [ENSG00000199337.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000201588.1] WARNING, no entry stored in dbm for [ENSG00000201588.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000200370.1] WARNING, no entry stored in dbm for [ENSG00000200370.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000202257.1] WARNING, no entry stored in dbm for [ENSG00000202257.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000201925.1] WARNING, no entry stored in dbm for [ENSG00000201925.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000201355.1] WARNING, no entry stored in dbm for [ENSG00000201355.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000202526.1] WARNING, no entry stored in dbm for [ENSG00000202526.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000199270.1] WARNING, no entry stored in dbm for [ENSG00000199270.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000199334.1] WARNING, no entry stored in dbm for [ENSG00000199334.1] WARNING, no entry stored in dbm for [ENSG00000279641.1] WARNING, no entry stored in dbm for [ENSG00000199910.1] WARNING, no entry stored in 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no entry stored in dbm for [ENSG00000236051.7] WARNING, no entry stored in dbm for [ENSG00000235759.1] WARNING, no entry stored in dbm for [ENSG00000235531.11] WARNING, no entry stored in dbm for [ENSG00000228782.7] WARNING, no entry stored in dbm for [ENSG00000286322.1] WARNING, no entry stored in dbm for [ENSG00000259691.2] WARNING, no entry stored in dbm for [ENSG00000255248.9] WARNING, no entry stored in dbm for [ENSG00000203930.12] WARNING, no entry stored in dbm for [ENSG00000260386.6] WARNING, no entry stored in dbm for [ENSG00000214883.4] WARNING, no entry stored in dbm for [ENSG00000270066.3] WARNING, no entry stored in dbm for [ENSG00000260075.1] WARNING, no entry stored in dbm for [ENSG00000224110.3] WARNING, no entry stored in dbm for [ENSG00000250127.1] WARNING, no entry stored in dbm for [ENSG00000263438.6] WARNING, no entry stored in dbm for [ENSG00000224910.2] WARNING, no entry stored in dbm for [ENSG00000236819.2] WARNING, no entry stored in dbm for [ENSG00000281912.1] WARNING, no entry stored in dbm for [ENSG00000250056.8] WARNING, no entry stored in dbm for [ENSG00000267339.7] WARNING, no entry stored in dbm for [ENSG00000232139.6] WARNING, no entry stored in dbm for [ENSG00000244151.1] WARNING, no entry stored in dbm for [ENSG00000225269.3] WARNING, no entry stored in dbm for [ENSG00000226067.7] WARNING, no entry stored in dbm for [ENSG00000224511.2] WARNING, no entry stored in dbm for [ENSG00000231721.7] WARNING, no entry stored in dbm for [ENSG00000226869.6] WARNING, no entry stored in dbm for [ENSG00000254208.1] WARNING, no entry stored in dbm for [ENSG00000236467.8] WARNING, no entry stored in dbm for [ENSG00000234426.3] WARNING, no entry stored in dbm for [ENSG00000225470.8] WARNING, no entry stored in dbm for [ENSG00000215492.6] WARNING, no entry stored in dbm for [ENSG00000226188.2] WARNING, no entry stored in dbm for [ENSG00000226188.2] WARNING, no entry stored in dbm for [ENSG00000215492.6] WARNING, no entry stored in dbm for [ENSG00000231261.1] WARNING, no entry stored in dbm for [ENSG00000214195.4] WARNING, no entry stored in dbm for [ENSG00000259722.2] WARNING, no entry stored in dbm for [ENSG00000227391.1] WARNING, no entry stored in dbm for [ENSG00000276550.4] WARNING, no entry stored in dbm for [ENSG00000261856.1] WARNING, no entry stored in dbm for [ENSG00000276550.4] WARNING, no entry stored in dbm for [ENSG00000232200.2] WARNING, no entry stored in dbm for [ENSG00000215353.2] WARNING, no entry stored in dbm for [ENSG00000228791.8] WARNING, no entry stored in dbm for [ENSG00000233672.9] WARNING, no entry stored in dbm for [ENSG00000267136.1] WARNING, no entry stored in dbm for [ENSG00000278881.2] WARNING, no entry stored in dbm for [ENSG00000215483.11] WARNING, no entry stored in dbm for [ENSG00000215483.11] WARNING, no entry stored in dbm for [ENSG00000215483.11] WARNING, no entry stored in dbm for [ENSG00000253960.1] WARNING, no entry stored in dbm for [ENSG00000260565.7] WARNING, no entry stored in dbm for [ENSG00000254859.1] WARNING, no entry stored in dbm for [ENSG00000260782.1] WARNING, no entry stored in dbm for [ENSG00000226688.7] WARNING, no entry stored in dbm for [ENSG00000236452.1] WARNING, no entry stored in dbm for [ENSG00000176124.15] WARNING, no entry stored in dbm for [ENSG00000234152.1] WARNING, no entry stored in dbm for [ENSG00000225889.9] WARNING, no entry stored in dbm for [ENSG00000246363.3] WARNING, no entry stored in dbm for [ENSG00000239345.2] WARNING, no entry stored in dbm for [ENSG00000255856.2] WARNING, no entry stored in dbm for [ENSG00000231064.7] WARNING, no entry stored in dbm for [ENSG00000280441.3] WARNING, no entry stored in dbm for [ENSG00000280441.3] WARNING, no entry stored in dbm for [ENSG00000260088.1] WARNING, no entry stored in dbm for [ENSG00000258583.7] WARNING, no entry stored in dbm for [ENSG00000222041.11] WARNING, no entry stored in dbm for [ENSG00000277739.1] WARNING, no entry stored in dbm for [ENSG00000283568.1] WARNING, no entry stored in dbm for [ENSG00000230383.1] WARNING, no entry stored in dbm for [ENSG00000286033.1] WARNING, no entry stored in dbm for [ENSG00000254697.1] WARNING, no entry stored in dbm for [ENSG00000232359.1] WARNING, no entry stored in dbm for [ENSG00000283541.1] WARNING, no entry stored in dbm for [ENSG00000227825.4] WARNING, no entry stored in dbm for [ENSG00000277739.1] WARNING, no entry stored in dbm for [ENSG00000283568.1] WARNING, no entry stored in dbm for [ENSG00000163098.6] WARNING, no entry stored in dbm for [ENSG00000286277.1] WARNING, no entry stored in dbm for [ENSG00000249131.2] WARNING, no entry stored in dbm for [ENSG00000249375.8] WARNING, no entry stored in dbm for [ENSG00000178722.13] WARNING, no entry stored in dbm for [ENSG00000255949.1] WARNING, no entry stored in dbm for [ENSG00000263647.1] WARNING, no entry stored in dbm for [ENSG00000214035.3] WARNING, no entry stored in dbm for [ENSG00000205534.6] WARNING, no entry stored in dbm for [ENSG00000270524.1] WARNING, no entry stored in dbm for [ENSG00000279175.1] WARNING, no entry stored in dbm for [ENSG00000279175.1] WARNING, no entry stored in dbm for [ENSG00000279175.1] WARNING, no entry stored in dbm for [ENSG00000279175.1] WARNING, no entry stored in dbm for [ENSG00000229124.7] WARNING, no entry stored in dbm for [ENSG00000227195.11] WARNING, no entry stored in dbm for [ENSG00000233431.1] WARNING, no entry stored in dbm for [ENSG00000270780.1] WARNING, no entry stored in dbm for [ENSG00000273933.1] WARNING, no entry stored in dbm for [ENSG00000230490.3] WARNING, no entry stored in dbm for [ENSG00000246477.3] WARNING, no entry stored in dbm for [ENSG00000248692.5] WARNING, no entry stored in dbm for [ENSG00000261143.1] WARNING, no entry stored in dbm for [ENSG00000224668.1] WARNING, no entry stored in dbm for [ENSG00000240197.1] WARNING, no entry stored in dbm for [ENSG00000278182.1] WARNING, no entry stored in dbm for [ENSG00000203825.4] WARNING, no entry stored in dbm for [ENSG00000272150.5] WARNING, no entry stored in dbm for [ENSG00000223779.6] WARNING, no entry stored in dbm for [ENSG00000277125.1] WARNING, no entry stored in dbm for [ENSG00000215158.9] WARNING, no entry stored in dbm for [ENSG00000229930.1] WARNING, no entry stored in dbm for [ENSG00000284675.1] WARNING, no entry stored in dbm for [ENSG00000241612.1] WARNING, no entry stored in dbm for [ENSG00000236776.1] WARNING, no entry stored in dbm for [ENSG00000262223.8] WARNING, no entry stored in dbm for [ENSG00000251314.2] WARNING, no entry stored in dbm for [ENSG00000286895.1] WARNING, no entry stored in dbm for [ENSG00000239268.3] WARNING, no entry stored in dbm for [ENSG00000285918.1] WARNING, no entry stored in dbm for [ENSG00000258320.1] WARNING, no entry stored in dbm for [ENSG00000264151.6] WARNING, no entry stored in dbm for [ENSG00000259347.7] WARNING, no entry stored in dbm for [ENSG00000244151.1] WARNING, no entry stored in dbm for [ENSG00000250869.2] WARNING, no entry stored in dbm for [ENSG00000257943.2] WARNING, no entry stored in dbm for [ENSG00000238105.7] WARNING, no entry stored in dbm for [ENSG00000279863.1] WARNING, no entry stored in dbm for [ENSG00000254559.1] WARNING, no entry stored in dbm for [ENSG00000185641.6] WARNING, no entry stored in dbm for [ENSG00000281896.1] WARNING, no entry stored in dbm for [ENSG00000280828.1] WARNING, no entry stored in dbm for [ENSG00000186148.13] WARNING, no entry stored in dbm for [ENSG00000271018.1] WARNING, no entry stored in dbm for [ENSG00000224237.1] WARNING, no entry stored in dbm for [ENSG00000267769.1] WARNING, no entry stored in dbm for [ENSG00000282890.1] WARNING, no entry stored in dbm for [ENSG00000068781.21] WARNING, no entry stored in dbm for [ENSG00000111788.10] WARNING, no entry stored in dbm for [ENSG00000111788.10] WARNING, no entry stored in dbm for [ENSG00000280417.1] WARNING, no entry stored in dbm for [ENSG00000267139.1] WARNING, no entry stored in dbm for [ENSG00000214243.3] WARNING, no entry stored in dbm for [ENSG00000205485.13] WARNING, no entry stored in dbm for [ENSG00000239556.4] WARNING, no entry stored in dbm for [ENSG00000279775.1] WARNING, no entry stored in dbm for [ENSG00000227036.8] * STAR-Fusion complete. See output: /tmp/nxf.z8EdSJwVDa/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)