Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/e5ab6bd9c2e559b5089d5a2667afed/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/e5ab6bd9c2e559b5089d5a2667afed/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/46768ef3cf0617b2e8f1dd11585257/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/46768ef3cf0617b2e8f1dd11585257/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory