Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/02429f356f26bc899580dcee8efdfb/fi_workdir/659_dES-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/662a521d83d7d7d4b44f263e4a0dd7/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/662a521d83d7d7d4b44f263e4a0dd7/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 20861
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 20861
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:20861
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 4 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC079781.4--ASNS ENSEMBL gene 4220 16952 . + . FI_gene_label "ASNS^ENSG00000070669.17" ; ID "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; ccdsid "CCDS5652.1" ; exon_id "ENSE00001212450.2" ; exon_number 4 ; gene_id "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; gene_name ASNS ; gene_type protein_coding ; havana_gene "OTTHUMG00000022892.14" ; hgnc_id "HGNC:753" ; level 3 ; orig_coord_info "chr7,97868908,97869156,-" ; protein_id "ENSP00000175506.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AC079781.4--ASNS^ENST00000175506.8" ; transcript_name "ASNS-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC079781.4--ASNS ENSEMBL mRNA 4220 16952 . + . FI_gene_label "ASNS^ENSG00000070669.17" ; ID "AC079781.4--ASNS^ENST00000175506.8" ; Parent "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; ccdsid "CCDS5652.1" ; exon_id "ENSE00001212450.2" ; exon_number 4 ; gene_id "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; gene_name ASNS ; gene_type protein_coding ; havana_gene "OTTHUMG00000022892.14" ; hgnc_id "HGNC:753" ; level 3 ; orig_coord_info "chr7,97868908,97869156,-" ; protein_id "ENSP00000175506.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AC079781.4--ASNS^ENST00000175506.8" ; transcript_name "ASNS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092666.2--ACTR3B HAVANA gene 4250 21115 . + . FI_gene_label "ACTR3B^ENSG00000133627.18" ; ID "AC092666.2--ACTR3B^ACTR3B^ENSG00000133627.18" ; ccdsid "CCDS5934.1" ; exon_id "ENSE00003850575.1" ; exon_number 1 ; gene_id "AC092666.2--ACTR3B^ACTR3B^ENSG00000133627.18" ; gene_name ACTR3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151463.4" ; havana_transcript "OTTHUMT00000322803.2" ; hgnc_id "HGNC:17256" ; level 2 ; orig_coord_info "chr7,152759883,152759926,+" ; protein_id "ENSP00000256001.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092666.2--ACTR3B^ENST00000256001.13" ; transcript_name "ACTR3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092666.2--ACTR3B HAVANA mRNA 4250 21115 . + . FI_gene_label "ACTR3B^ENSG00000133627.18" ; ID "AC092666.2--ACTR3B^ENST00000256001.13" ; Parent "AC092666.2--ACTR3B^ACTR3B^ENSG00000133627.18" ; ccdsid "CCDS5934.1" ; exon_id "ENSE00003850575.1" ; exon_number 1 ; gene_id "AC092666.2--ACTR3B^ACTR3B^ENSG00000133627.18" ; gene_name ACTR3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151463.4" ; havana_transcript "OTTHUMT00000322803.2" ; hgnc_id "HGNC:17256" ; level 2 ; orig_coord_info "chr7,152759883,152759926,+" ; protein_id "ENSP00000256001.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092666.2--ACTR3B^ENST00000256001.13" ; transcript_name "ACTR3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADIPOR1--CADPS2 ENSEMBL gene 13785 50085 . + . FI_gene_label "CADPS2^ENSG00000081803.16" ; ID "ADIPOR1--CADPS2^CADPS2^ENSG00000081803.16" ; exon_id "ENSE00002685694.1" ; exon_number 1 ; gene_id "ADIPOR1--CADPS2^CADPS2^ENSG00000081803.16" ; gene_name CADPS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157093.3" ; hgnc_id "HGNC:16018" ; level 3 ; orig_coord_info "chr7,122885999,122886019,-" ; protein_id "ENSP00000325581.8" ; tag basic appris_alternative_2 ; transcript_id "ADIPOR1--CADPS2^ENST00000313070.11" ; transcript_name "CADPS2-201" ; transcript_support_level 5 ; transcript_type protein_coding
ADIPOR1--CADPS2 ENSEMBL mRNA 13785 50085 . + . FI_gene_label "CADPS2^ENSG00000081803.16" ; ID "ADIPOR1--CADPS2^ENST00000313070.11" ; Parent "ADIPOR1--CADPS2^CADPS2^ENSG00000081803.16" ; exon_id "ENSE00002685694.1" ; exon_number 1 ; gene_id "ADIPOR1--CADPS2^CADPS2^ENSG00000081803.16" ; gene_name CADPS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157093.3" ; hgnc_id "HGNC:16018" ; level 3 ; orig_coord_info "chr7,122885999,122886019,-" ; protein_id "ENSP00000325581.8" ; tag basic appris_alternative_2 ; transcript_id "ADIPOR1--CADPS2^ENST00000313070.11" ; transcript_name "CADPS2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ADIPOR1--CADPS2 HAVANA gene 1261 10778 . + . FI_gene_label "ADIPOR1^ENSG00000159346.13" ; ID "ADIPOR1--CADPS2^ADIPOR1^ENSG00000159346.13" ; ccdsid "CCDS1430.1" ; exon_id "ENSE00001386121.1" ; exon_number 2 ; gene_id "ADIPOR1--CADPS2^ADIPOR1^ENSG00000159346.13" ; gene_name ADIPOR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000041391.10" ; havana_transcript "OTTHUMT00000099160.3" ; hgnc_id "HGNC:24040" ; level 2 ; orig_coord_info "chr1,202950930,202951070,-" ; protein_id "ENSP00000341785.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADIPOR1--CADPS2^ENST00000340990.10" ; transcript_name "ADIPOR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADIPOR1--CADPS2 HAVANA mRNA 1261 10778 . + . FI_gene_label "ADIPOR1^ENSG00000159346.13" ; ID "ADIPOR1--CADPS2^ENST00000340990.10" ; Parent "ADIPOR1--CADPS2^ADIPOR1^ENSG00000159346.13" ; ccdsid "CCDS1430.1" ; exon_id "ENSE00001386121.1" ; exon_number 2 ; gene_id "ADIPOR1--CADPS2^ADIPOR1^ENSG00000159346.13" ; gene_name ADIPOR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000041391.10" ; havana_transcript "OTTHUMT00000099160.3" ; hgnc_id "HGNC:24040" ; level 2 ; orig_coord_info "chr1,202950930,202951070,-" ; protein_id "ENSP00000341785.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADIPOR1--CADPS2^ENST00000340990.10" ; transcript_name "ADIPOR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AP1M1--OR7A2P HAVANA gene 1058 24474 . + . FI_gene_label "AP1M1^ENSG00000072958.9" ; ID "AP1M1--OR7A2P^AP1M1^ENSG00000072958.9" ; ccdsid "CCDS12342.1" ; exon_id "ENSE00001130976.2" ; exon_number 1 ; gene_id "AP1M1--OR7A2P^AP1M1^ENSG00000072958.9" ; gene_name AP1M1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182323.4" ; havana_transcript "OTTHUMT00000460492.2" ; hgnc_id "HGNC:13667" ; level 2 ; orig_coord_info "chr19,16198027,16198068,+" ; protein_id "ENSP00000291439.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AP1M1--OR7A2P^ENST00000291439.8" ; transcript_name "AP1M1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AP1M1--OR7A2P HAVANA mRNA 1058 24474 . + . FI_gene_label "AP1M1^ENSG00000072958.9" ; ID "AP1M1--OR7A2P^ENST00000291439.8" ; Parent "AP1M1--OR7A2P^AP1M1^ENSG00000072958.9" ; ccdsid "CCDS12342.1" ; exon_id "ENSE00001130976.2" ; exon_number 1 ; gene_id "AP1M1--OR7A2P^AP1M1^ENSG00000072958.9" ; gene_name AP1M1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182323.4" ; havana_transcript "OTTHUMT00000460492.2" ; hgnc_id "HGNC:13667" ; level 2 ; orig_coord_info "chr19,16198027,16198068,+" ; protein_id "ENSP00000291439.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AP1M1--OR7A2P^ENST00000291439.8" ; transcript_name "AP1M1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AP1M1--OR7A8P HAVANA gene 1058 24474 . + . FI_gene_label "AP1M1^ENSG00000072958.9" ; ID "AP1M1--OR7A8P^AP1M1^ENSG00000072958.9" ; ccdsid "CCDS12342.1" ; exon_id "ENSE00001130976.2" ; exon_number 1 ; gene_id "AP1M1--OR7A8P^AP1M1^ENSG00000072958.9" ; gene_name AP1M1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182323.4" ; havana_transcript "OTTHUMT00000460492.2" ; hgnc_id "HGNC:13667" ; level 2 ; orig_coord_info "chr19,16198027,16198068,+" ; protein_id "ENSP00000291439.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AP1M1--OR7A8P^ENST00000291439.8" ; transcript_name "AP1M1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AP1M1--OR7A8P HAVANA mRNA 1058 24474 . + . FI_gene_label "AP1M1^ENSG00000072958.9" ; ID "AP1M1--OR7A8P^ENST00000291439.8" ; Parent "AP1M1--OR7A8P^AP1M1^ENSG00000072958.9" ; ccdsid "CCDS12342.1" ; exon_id "ENSE00001130976.2" ; exon_number 1 ; gene_id "AP1M1--OR7A8P^AP1M1^ENSG00000072958.9" ; gene_name AP1M1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182323.4" ; havana_transcript "OTTHUMT00000460492.2" ; hgnc_id "HGNC:13667" ; level 2 ; orig_coord_info "chr19,16198027,16198068,+" ; protein_id "ENSP00000291439.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AP1M1--OR7A8P^ENST00000291439.8" ; transcript_name "AP1M1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BOP1--CPSF1 HAVANA gene 12905 20978 . + . FI_gene_label "CPSF1^ENSG00000071894.17" ; ID "BOP1--CPSF1^CPSF1^ENSG00000071894.17" ; exon_id "ENSE00003723522.1" ; exon_number 1 ; gene_id "BOP1--CPSF1^CPSF1^ENSG00000071894.17" ; gene_name CPSF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000174612.6" ; havana_transcript "OTTHUMT00000427050.2" ; hgnc_id "HGNC:2324" ; level 2 ; orig_coord_info "chr8,144409015,144409158,-" ; protein_id "ENSP00000435761.2" ; transcript_id "BOP1--CPSF1^ENST00000531042.5" ; transcript_name "CPSF1-205" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
BOP1--CPSF1 HAVANA mRNA 12905 20978 . + . FI_gene_label "CPSF1^ENSG00000071894.17" ; ID "BOP1--CPSF1^ENST00000531042.5" ; Parent "BOP1--CPSF1^CPSF1^ENSG00000071894.17" ; exon_id "ENSE00003723522.1" ; exon_number 1 ; gene_id "BOP1--CPSF1^CPSF1^ENSG00000071894.17" ; gene_name CPSF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000174612.6" ; havana_transcript "OTTHUMT00000427050.2" ; hgnc_id "HGNC:2324" ; level 2 ; orig_coord_info "chr8,144409015,144409158,-" ; protein_id "ENSP00000435761.2" ; transcript_id "BOP1--CPSF1^ENST00000531042.5" ; transcript_name "CPSF1-205" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
BOP1--CPSF1 HAVANA gene 1069 7453 . + . FI_gene_label "BOP1^ENSG00000261236.8" ; ID "BOP1--CPSF1^BOP1^ENSG00000261236.8" ; exon_id "ENSE00002628286.1" ; exon_number 1 ; gene_id "BOP1--CPSF1^BOP1^ENSG00000261236.8" ; gene_name BOP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000174603.5" ; havana_transcript "OTTHUMT00000426982.3" ; hgnc_id "HGNC:15519" ; level 2 ; orig_coord_info "chr8,144291272,144291370,-" ; protein_id "ENSP00000456082.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "BOP1--CPSF1^ENST00000569403.1" ; transcript_name "BOP1-204" ; transcript_support_level 4 ; transcript_type protein_coding
BOP1--CPSF1 HAVANA mRNA 1069 7453 . + . FI_gene_label "BOP1^ENSG00000261236.8" ; ID "BOP1--CPSF1^ENST00000569403.1" ; Parent "BOP1--CPSF1^BOP1^ENSG00000261236.8" ; exon_id "ENSE00002628286.1" ; exon_number 1 ; gene_id "BOP1--CPSF1^BOP1^ENSG00000261236.8" ; gene_name BOP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000174603.5" ; havana_transcript "OTTHUMT00000426982.3" ; hgnc_id "HGNC:15519" ; level 2 ; orig_coord_info "chr8,144291272,144291370,-" ; protein_id "ENSP00000456082.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "BOP1--CPSF1^ENST00000569403.1" ; transcript_name "BOP1-204" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
CACNB2--PHRF1 HAVANA gene 35681 52611 . + . FI_gene_label "PHRF1^ENSG00000070047.13" ; ID "CACNB2--PHRF1^PHRF1^ENSG00000070047.13" ; ccdsid "CCDS65988.1" ; exon_id "ENSE00001206357.3" ; exon_number 2 ; gene_id "CACNB2--PHRF1^PHRF1^ENSG00000070047.13" ; gene_name PHRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165141.7" ; havana_transcript "OTTHUMT00000382133.2" ; hgnc_id "HGNC:24351" ; level 2 ; orig_coord_info "chr11,581513,581606,+" ; protein_id "ENSP00000264555.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CACNB2--PHRF1^ENST00000264555.10" ; transcript_name "PHRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CACNB2--PHRF1 HAVANA mRNA 35681 52611 . + . FI_gene_label "PHRF1^ENSG00000070047.13" ; ID "CACNB2--PHRF1^ENST00000264555.10" ; Parent "CACNB2--PHRF1^PHRF1^ENSG00000070047.13" ; ccdsid "CCDS65988.1" ; exon_id "ENSE00001206357.3" ; exon_number 2 ; gene_id "CACNB2--PHRF1^PHRF1^ENSG00000070047.13" ; gene_name PHRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165141.7" ; havana_transcript "OTTHUMT00000382133.2" ; hgnc_id "HGNC:24351" ; level 2 ; orig_coord_info "chr11,581513,581606,+" ; protein_id "ENSP00000264555.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CACNB2--PHRF1^ENST00000264555.10" ; transcript_name "PHRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CACNB2--PHRF1 HAVANA gene 1535 29886 . + . FI_gene_label "CACNB2^ENSG00000165995.22" ; ID "CACNB2--PHRF1^CACNB2^ENSG00000165995.22" ; ccdsid "CCDS7127.1" ; exon_id "ENSE00001563168.1" ; exon_number 1 ; gene_id "CACNB2--PHRF1^CACNB2^ENSG00000165995.22" ; gene_name CACNB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017764.9" ; havana_transcript "OTTHUMT00000047073.2" ; hgnc_id "HGNC:1402" ; level 2 ; orig_coord_info "chr10,18141180,18141215,+" ; protein_id "ENSP00000282343.8" ; tag basic CCDS ; transcript_id "CACNB2--PHRF1^ENST00000282343.13" ; transcript_name "CACNB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CACNB2--PHRF1 HAVANA mRNA 1535 29886 . + . FI_gene_label "CACNB2^ENSG00000165995.22" ; ID "CACNB2--PHRF1^ENST00000282343.13" ; Parent "CACNB2--PHRF1^CACNB2^ENSG00000165995.22" ; ccdsid "CCDS7127.1" ; exon_id "ENSE00001563168.1" ; exon_number 1 ; gene_id "CACNB2--PHRF1^CACNB2^ENSG00000165995.22" ; gene_name CACNB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017764.9" ; havana_transcript "OTTHUMT00000047073.2" ; hgnc_id "HGNC:1402" ; level 2 ; orig_coord_info "chr10,18141180,18141215,+" ; protein_id "ENSP00000282343.8" ; tag basic CCDS ; transcript_id "CACNB2--PHRF1^ENST00000282343.13" ; transcript_name "CACNB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--OSBPL5 HAVANA gene 30809 55448 . + . FI_gene_label "OSBPL5^ENSG00000021762.20" ; ID "CARS1--OSBPL5^OSBPL5^ENSG00000021762.20" ; ccdsid "CCDS31344.1" ; exon_id "ENSE00003679977.1" ; exon_number 2 ; gene_id "CARS1--OSBPL5^OSBPL5^ENSG00000021762.20" ; gene_name OSBPL5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011702.8" ; havana_transcript "OTTHUMT00000032332.3" ; hgnc_id "HGNC:16392" ; level 2 ; orig_coord_info "chr11,3129013,3129148,-" ; protein_id "ENSP00000263650.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CARS1--OSBPL5^ENST00000263650.12" ; transcript_name "OSBPL5-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--OSBPL5 HAVANA mRNA 30809 55448 . + . FI_gene_label "OSBPL5^ENSG00000021762.20" ; ID "CARS1--OSBPL5^ENST00000263650.12" ; Parent "CARS1--OSBPL5^OSBPL5^ENSG00000021762.20" ; ccdsid "CCDS31344.1" ; exon_id "ENSE00003679977.1" ; exon_number 2 ; gene_id "CARS1--OSBPL5^OSBPL5^ENSG00000021762.20" ; gene_name OSBPL5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011702.8" ; havana_transcript "OTTHUMT00000032332.3" ; hgnc_id "HGNC:16392" ; level 2 ; orig_coord_info "chr11,3129013,3129148,-" ; protein_id "ENSP00000263650.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CARS1--OSBPL5^ENST00000263650.12" ; transcript_name "OSBPL5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARS1--OSBPL5 HAVANA gene 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--OSBPL5^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--OSBPL5^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--OSBPL5^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARS1--OSBPL5 HAVANA mRNA 1196 26372 . + . FI_gene_label "CARS1^ENSG00000110619.18" ; ID "CARS1--OSBPL5^ENST00000278224.13" ; Parent "CARS1--OSBPL5^CARS1^ENSG00000110619.18" ; ccdsid "CCDS41602.1" ; exon_id "ENSE00003614127.1" ; exon_number 1 ; gene_id "CARS1--OSBPL5^CARS1^ENSG00000110619.18" ; gene_name CARS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010927.9" ; havana_transcript "OTTHUMT00000030264.2" ; hgnc_id "HGNC:1493" ; level 2 ; orig_coord_info "chr11,3057343,3057367,-" ; protein_id "ENSP00000278224.9" ; tag basic CCDS ; transcript_id "CARS1--OSBPL5^ENST00000278224.13" ; transcript_name "CARS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC75P1--GXYLT2 HAVANA gene 4792 14412 . + . FI_gene_label "GXYLT2^ENSG00000172986.13" ; ID "CCDC75P1--GXYLT2^GXYLT2^ENSG00000172986.13" ; ccdsid "CCDS46870.1" ; exon_id "ENSE00001506376.3" ; exon_number 1 ; gene_id "CCDC75P1--GXYLT2^GXYLT2^ENSG00000172986.13" ; gene_name GXYLT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158815.3" ; havana_transcript "OTTHUMT00000352318.2" ; hgnc_id "HGNC:33383" ; level 2 ; orig_coord_info "chr3,72888234,72888508,+" ; protein_id "ENSP00000374268.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCDC75P1--GXYLT2^ENST00000389617.9" ; transcript_name "GXYLT2-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC75P1--GXYLT2 HAVANA mRNA 4792 14412 . + . FI_gene_label "GXYLT2^ENSG00000172986.13" ; ID "CCDC75P1--GXYLT2^ENST00000389617.9" ; Parent "CCDC75P1--GXYLT2^GXYLT2^ENSG00000172986.13" ; ccdsid "CCDS46870.1" ; exon_id "ENSE00001506376.3" ; exon_number 1 ; gene_id "CCDC75P1--GXYLT2^GXYLT2^ENSG00000172986.13" ; gene_name GXYLT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158815.3" ; havana_transcript "OTTHUMT00000352318.2" ; hgnc_id "HGNC:33383" ; level 2 ; orig_coord_info "chr3,72888234,72888508,+" ; protein_id "ENSP00000374268.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCDC75P1--GXYLT2^ENST00000389617.9" ; transcript_name "GXYLT2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CDC42BPA--WDR64 HAVANA gene 1761 51204 . + . FI_gene_label "CDC42BPA^ENSG00000143776.18" ; ID "CDC42BPA--WDR64^CDC42BPA^ENSG00000143776.18" ; exon_id "ENSE00001937488.1" ; exon_number 1 ; gene_id "CDC42BPA--WDR64^CDC42BPA^ENSG00000143776.18" ; gene_name CDC42BPA ; gene_type protein_coding ; havana_gene "OTTHUMG00000037618.3" ; havana_transcript "OTTHUMT00000091698.1" ; hgnc_id "HGNC:1737" ; level 2 ; orig_coord_info "chr1,227317005,227317182,-" ; protein_id "ENSP00000335341.6" ; tag dotter_confirmed basic appris_alternative_1 ; transcript_id "CDC42BPA--WDR64^ENST00000334218.9" ; transcript_name "CDC42BPA-201" ; transcript_support_level 5 ; transcript_type protein_coding
CDC42BPA--WDR64 HAVANA mRNA 1761 51204 . + . FI_gene_label "CDC42BPA^ENSG00000143776.18" ; ID "CDC42BPA--WDR64^ENST00000334218.9" ; Parent "CDC42BPA--WDR64^CDC42BPA^ENSG00000143776.18" ; exon_id "ENSE00001937488.1" ; exon_number 1 ; gene_id "CDC42BPA--WDR64^CDC42BPA^ENSG00000143776.18" ; gene_name CDC42BPA ; gene_type protein_coding ; havana_gene "OTTHUMG00000037618.3" ; havana_transcript "OTTHUMT00000091698.1" ; hgnc_id "HGNC:1737" ; level 2 ; orig_coord_info "chr1,227317005,227317182,-" ; protein_id "ENSP00000335341.6" ; tag dotter_confirmed basic appris_alternative_1 ; transcript_id "CDC42BPA--WDR64^ENST00000334218.9" ; transcript_name "CDC42BPA-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CDC42BPA--WDR64 ENSEMBL gene 54205 87031 . + . FI_gene_label "WDR64^ENSG00000162843.17" ; ID "CDC42BPA--WDR64^WDR64^ENSG00000162843.17" ; exon_id "ENSE00002265212.1" ; exon_number 1 ; gene_id "CDC42BPA--WDR64^WDR64^ENSG00000162843.17" ; gene_name WDR64 ; gene_type protein_coding ; havana_gene "OTTHUMG00000039705.13" ; hgnc_id "HGNC:26570" ; level 3 ; orig_coord_info "chr1,241652485,241652629,+" ; protein_id "ENSP00000355510.2" ; tag basic appris_principal_4 ; transcript_id "CDC42BPA--WDR64^ENST00000366552.6" ; transcript_name "WDR64-201" ; transcript_support_level 5 ; transcript_type protein_coding
CDC42BPA--WDR64 ENSEMBL mRNA 54205 87031 . + . FI_gene_label "WDR64^ENSG00000162843.17" ; ID "CDC42BPA--WDR64^ENST00000366552.6" ; Parent "CDC42BPA--WDR64^WDR64^ENSG00000162843.17" ; exon_id "ENSE00002265212.1" ; exon_number 1 ; gene_id "CDC42BPA--WDR64^WDR64^ENSG00000162843.17" ; gene_name WDR64 ; gene_type protein_coding ; havana_gene "OTTHUMG00000039705.13" ; hgnc_id "HGNC:26570" ; level 3 ; orig_coord_info "chr1,241652485,241652629,+" ; protein_id "ENSP00000355510.2" ; tag basic appris_principal_4 ; transcript_id "CDC42BPA--WDR64^ENST00000366552.6" ; transcript_name "WDR64-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DMTF1--CROT HAVANA gene 1045 25611 . + . FI_gene_label "DMTF1^ENSG00000135164.19" ; ID "DMTF1--CROT^DMTF1^ENSG00000135164.19" ; ccdsid "CCDS5601.1" ; exon_id "ENSE00003616770.1" ; exon_number 3 ; gene_id "DMTF1--CROT^DMTF1^ENSG00000135164.19" ; gene_name DMTF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154135.66" ; havana_transcript "OTTHUMT00000334024.4" ; hgnc_id "HGNC:14603" ; level 2 ; orig_coord_info "chr7,87164942,87165050,+" ; protein_id "ENSP00000332171.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DMTF1--CROT^ENST00000331242.12" ; transcript_name "DMTF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
DMTF1--CROT HAVANA mRNA 1045 25611 . + . FI_gene_label "DMTF1^ENSG00000135164.19" ; ID "DMTF1--CROT^ENST00000331242.12" ; Parent "DMTF1--CROT^DMTF1^ENSG00000135164.19" ; ccdsid "CCDS5601.1" ; exon_id "ENSE00003616770.1" ; exon_number 3 ; gene_id "DMTF1--CROT^DMTF1^ENSG00000135164.19" ; gene_name DMTF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154135.66" ; havana_transcript "OTTHUMT00000334024.4" ; hgnc_id "HGNC:14603" ; level 2 ; orig_coord_info "chr7,87164942,87165050,+" ; protein_id "ENSP00000332171.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DMTF1--CROT^ENST00000331242.12" ; transcript_name "DMTF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DMTF1--CROT HAVANA gene 28624 45717 . + . FI_gene_label "CROT^ENSG00000005469.12" ; ID "DMTF1--CROT^CROT^ENSG00000005469.12" ; ccdsid "CCDS5604.1" ; exon_id "ENSE00000877143.1" ; exon_number 3 ; gene_id "DMTF1--CROT^CROT^ENSG00000005469.12" ; gene_name CROT ; gene_type protein_coding ; havana_gene "OTTHUMG00000023653.5" ; havana_transcript "OTTHUMT00000253485.1" ; hgnc_id "HGNC:2366" ; level 2 ; orig_coord_info "chr7,87349069,87349183,+" ; protein_id "ENSP00000331981.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DMTF1--CROT^ENST00000331536.8" ; transcript_name "CROT-201" ; transcript_support_level 1 ; transcript_type protein_coding
DMTF1--CROT HAVANA mRNA 28624 45717 . + . FI_gene_label "CROT^ENSG00000005469.12" ; ID "DMTF1--CROT^ENST00000331536.8" ; Parent "DMTF1--CROT^CROT^ENSG00000005469.12" ; ccdsid "CCDS5604.1" ; exon_id "ENSE00000877143.1" ; exon_number 3 ; gene_id "DMTF1--CROT^CROT^ENSG00000005469.12" ; gene_name CROT ; gene_type protein_coding ; havana_gene "OTTHUMG00000023653.5" ; havana_transcript "OTTHUMT00000253485.1" ; hgnc_id "HGNC:2366" ; level 2 ; orig_coord_info "chr7,87349069,87349183,+" ; protein_id "ENSP00000331981.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DMTF1--CROT^ENST00000331536.8" ; transcript_name "CROT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DOCK9--JPT1P1 HAVANA gene 2676 54478 . + . FI_gene_label "DOCK9^ENSG00000088387.19" ; ID "DOCK9--JPT1P1^DOCK9^ENSG00000088387.19" ; exon_id "ENSE00003799747.1" ; exon_number 1 ; gene_id "DOCK9--JPT1P1^DOCK9^ENSG00000088387.19" ; gene_name DOCK9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017260.8" ; havana_transcript "OTTHUMT00000490487.1" ; hgnc_id "HGNC:14132" ; level 2 ; orig_coord_info "chr13,99015447,99015608,-" ; protein_id "ENSP00000341086.4" ; transcript_id "DOCK9--JPT1P1^ENST00000339416.7" ; transcript_name "DOCK9-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
DOCK9--JPT1P1 HAVANA mRNA 2676 54478 . + . FI_gene_label "DOCK9^ENSG00000088387.19" ; ID "DOCK9--JPT1P1^ENST00000339416.7" ; Parent "DOCK9--JPT1P1^DOCK9^ENSG00000088387.19" ; exon_id "ENSE00003799747.1" ; exon_number 1 ; gene_id "DOCK9--JPT1P1^DOCK9^ENSG00000088387.19" ; gene_name DOCK9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017260.8" ; havana_transcript "OTTHUMT00000490487.1" ; hgnc_id "HGNC:14132" ; level 2 ; orig_coord_info "chr13,99015447,99015608,-" ; protein_id "ENSP00000341086.4" ; transcript_id "DOCK9--JPT1P1^ENST00000339416.7" ; transcript_name "DOCK9-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
DOCK9--PPIAP66 HAVANA gene 2676 54478 . + . FI_gene_label "DOCK9^ENSG00000088387.19" ; ID "DOCK9--PPIAP66^DOCK9^ENSG00000088387.19" ; exon_id "ENSE00003799747.1" ; exon_number 1 ; gene_id "DOCK9--PPIAP66^DOCK9^ENSG00000088387.19" ; gene_name DOCK9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017260.8" ; havana_transcript "OTTHUMT00000490487.1" ; hgnc_id "HGNC:14132" ; level 2 ; orig_coord_info "chr13,99015447,99015608,-" ; protein_id "ENSP00000341086.4" ; transcript_id "DOCK9--PPIAP66^ENST00000339416.7" ; transcript_name "DOCK9-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
DOCK9--PPIAP66 HAVANA mRNA 2676 54478 . + . FI_gene_label "DOCK9^ENSG00000088387.19" ; ID "DOCK9--PPIAP66^ENST00000339416.7" ; Parent "DOCK9--PPIAP66^DOCK9^ENSG00000088387.19" ; exon_id "ENSE00003799747.1" ; exon_number 1 ; gene_id "DOCK9--PPIAP66^DOCK9^ENSG00000088387.19" ; gene_name DOCK9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017260.8" ; havana_transcript "OTTHUMT00000490487.1" ; hgnc_id "HGNC:14132" ; level 2 ; orig_coord_info "chr13,99015447,99015608,-" ; protein_id "ENSP00000341086.4" ; transcript_id "DOCK9--PPIAP66^ENST00000339416.7" ; transcript_name "DOCK9-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
DTNB--ASXL2 HAVANA gene 1001 34472 . + . FI_gene_label "DTNB^ENSG00000138101.19" ; ID "DTNB--ASXL2^DTNB^ENSG00000138101.19" ; ccdsid "CCDS74496.1" ; exon_id "ENSE00003490243.1" ; exon_number 2 ; gene_id "DTNB--ASXL2^DTNB^ENSG00000138101.19" ; gene_name DTNB ; gene_type protein_coding ; havana_gene "OTTHUMG00000152129.7" ; hgnc_id "HGNC:3058" ; level 2 ; orig_coord_info "chr2,25652594,25652660,-" ; protein_id "ENSP00000288642.9" ; tag basic appris_alternative_1 CCDS ; transcript_id "DTNB--ASXL2^ENST00000288642.12" ; transcript_name "DTNB-201" ; transcript_support_level 2 ; transcript_type protein_coding
DTNB--ASXL2 HAVANA mRNA 1001 34472 . + . FI_gene_label "DTNB^ENSG00000138101.19" ; ID "DTNB--ASXL2^ENST00000288642.12" ; Parent "DTNB--ASXL2^DTNB^ENSG00000138101.19" ; ccdsid "CCDS74496.1" ; exon_id "ENSE00003490243.1" ; exon_number 2 ; gene_id "DTNB--ASXL2^DTNB^ENSG00000138101.19" ; gene_name DTNB ; gene_type protein_coding ; havana_gene "OTTHUMG00000152129.7" ; hgnc_id "HGNC:3058" ; level 2 ; orig_coord_info "chr2,25652594,25652660,-" ; protein_id "ENSP00000288642.9" ; tag basic appris_alternative_1 CCDS ; transcript_id "DTNB--ASXL2^ENST00000288642.12" ; transcript_name "DTNB-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DTNB--ASXL2 ENSEMBL gene 37541 62810 . + . FI_gene_label "ASXL2^ENSG00000143970.17" ; ID "DTNB--ASXL2^ASXL2^ENSG00000143970.17" ; exon_id "ENSE00003596643.1" ; exon_number 2 ; gene_id "DTNB--ASXL2^ASXL2^ENSG00000143970.17" ; gene_name ASXL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152176.6" ; hgnc_id "HGNC:23805" ; level 3 ; orig_coord_info "chr2,25845481,25845536,-" ; protein_id "ENSP00000337250.4" ; tag basic appris_alternative_2 ; transcript_id "DTNB--ASXL2^ENST00000336112.8" ; transcript_name "ASXL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DTNB--ASXL2 ENSEMBL mRNA 37541 62810 . + . FI_gene_label "ASXL2^ENSG00000143970.17" ; ID "DTNB--ASXL2^ENST00000336112.8" ; Parent "DTNB--ASXL2^ASXL2^ENSG00000143970.17" ; exon_id "ENSE00003596643.1" ; exon_number 2 ; gene_id "DTNB--ASXL2^ASXL2^ENSG00000143970.17" ; gene_name ASXL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152176.6" ; hgnc_id "HGNC:23805" ; level 3 ; orig_coord_info "chr2,25845481,25845536,-" ; protein_id "ENSP00000337250.4" ; tag basic appris_alternative_2 ; transcript_id "DTNB--ASXL2^ENST00000336112.8" ; transcript_name "ASXL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EFL1--GOLGA6L11P HAVANA gene 1001 25062 . + . FI_gene_label "EFL1^ENSG00000140598.15" ; ID "EFL1--GOLGA6L11P^EFL1^ENSG00000140598.15" ; ccdsid "CCDS42071.1" ; exon_id "ENSE00003786417.1" ; exon_number 2 ; gene_id "EFL1--GOLGA6L11P^EFL1^ENSG00000140598.15" ; gene_name EFL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172573.5" ; havana_transcript "OTTHUMT00000419252.2" ; hgnc_id "HGNC:25789" ; level 2 ; orig_coord_info "chr15,82261688,82261778,-" ; protein_id "ENSP00000268206.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EFL1--GOLGA6L11P^ENST00000268206.12" ; transcript_name "EFL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
EFL1--GOLGA6L11P HAVANA mRNA 1001 25062 . + . FI_gene_label "EFL1^ENSG00000140598.15" ; ID "EFL1--GOLGA6L11P^ENST00000268206.12" ; Parent "EFL1--GOLGA6L11P^EFL1^ENSG00000140598.15" ; ccdsid "CCDS42071.1" ; exon_id "ENSE00003786417.1" ; exon_number 2 ; gene_id "EFL1--GOLGA6L11P^EFL1^ENSG00000140598.15" ; gene_name EFL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172573.5" ; havana_transcript "OTTHUMT00000419252.2" ; hgnc_id "HGNC:25789" ; level 2 ; orig_coord_info "chr15,82261688,82261778,-" ; protein_id "ENSP00000268206.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EFL1--GOLGA6L11P^ENST00000268206.12" ; transcript_name "EFL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FGFR3--TACC3 HAVANA gene 1020 10219 . + . FI_gene_label "FGFR3^ENSG00000068078.20" ; ID "FGFR3--TACC3^FGFR3^ENSG00000068078.20" ; exon_id "ENSE00001596390.1" ; exon_number 2 ; gene_id "FGFR3--TACC3^FGFR3^ENSG00000068078.20" ; gene_name FGFR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121148.7" ; havana_transcript "OTTHUMT00000495785.1" ; hgnc_id "HGNC:3690" ; level 2 ; orig_coord_info "chr4,1793935,1794043,+" ; protein_id "ENSP00000260795.3" ; transcript_id "FGFR3--TACC3^ENST00000260795.8" ; transcript_name "FGFR3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
FGFR3--TACC3 HAVANA mRNA 1020 10219 . + . FI_gene_label "FGFR3^ENSG00000068078.20" ; ID "FGFR3--TACC3^ENST00000260795.8" ; Parent "FGFR3--TACC3^FGFR3^ENSG00000068078.20" ; exon_id "ENSE00001596390.1" ; exon_number 2 ; gene_id "FGFR3--TACC3^FGFR3^ENSG00000068078.20" ; gene_name FGFR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121148.7" ; havana_transcript "OTTHUMT00000495785.1" ; hgnc_id "HGNC:3690" ; level 2 ; orig_coord_info "chr4,1793935,1794043,+" ; protein_id "ENSP00000260795.3" ; transcript_id "FGFR3--TACC3^ENST00000260795.8" ; transcript_name "FGFR3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
FGFR3--TACC3 HAVANA gene 16535 31742 . + . FI_gene_label "TACC3^ENSG00000013810.20" ; ID "FGFR3--TACC3^TACC3^ENSG00000013810.20" ; ccdsid "CCDS3352.1" ; exon_id "ENSE00003597099.1" ; exon_number 2 ; gene_id "FGFR3--TACC3^TACC3^ENSG00000013810.20" ; gene_name TACC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000089535.25" ; havana_transcript "OTTHUMT00000203730.4" ; hgnc_id "HGNC:11524" ; level 2 ; orig_coord_info "chr4,1723422,1723583,+" ; protein_id "ENSP00000326550.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "FGFR3--TACC3^ENST00000313288.9" ; transcript_name "TACC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
FGFR3--TACC3 HAVANA mRNA 16535 31742 . + . FI_gene_label "TACC3^ENSG00000013810.20" ; ID "FGFR3--TACC3^ENST00000313288.9" ; Parent "FGFR3--TACC3^TACC3^ENSG00000013810.20" ; ccdsid "CCDS3352.1" ; exon_id "ENSE00003597099.1" ; exon_number 2 ; gene_id "FGFR3--TACC3^TACC3^ENSG00000013810.20" ; gene_name TACC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000089535.25" ; havana_transcript "OTTHUMT00000203730.4" ; hgnc_id "HGNC:11524" ; level 2 ; orig_coord_info "chr4,1723422,1723583,+" ; protein_id "ENSP00000326550.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "FGFR3--TACC3^ENST00000313288.9" ; transcript_name "TACC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IGSF3--AC027612.3 HAVANA gene 2325 17240 . + . FI_gene_label "IGSF3^ENSG00000143061.18" ; ID "IGSF3--AC027612.3^IGSF3^ENSG00000143061.18" ; ccdsid "CCDS30814.1" ; exon_id "ENSE00000957890.1" ; exon_number 1 ; gene_id "IGSF3--AC027612.3^IGSF3^ENSG00000143061.18" ; gene_name IGSF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022751.4" ; havana_transcript "OTTHUMT00000059041.1" ; hgnc_id "HGNC:5950" ; level 2 ; orig_coord_info "chr1,116666284,116666326,-" ; protein_id "ENSP00000321184.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "IGSF3--AC027612.3^ENST00000318837.6" ; transcript_name "IGSF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
IGSF3--AC027612.3 HAVANA mRNA 2325 17240 . + . FI_gene_label "IGSF3^ENSG00000143061.18" ; ID "IGSF3--AC027612.3^ENST00000318837.6" ; Parent "IGSF3--AC027612.3^IGSF3^ENSG00000143061.18" ; ccdsid "CCDS30814.1" ; exon_id "ENSE00000957890.1" ; exon_number 1 ; gene_id "IGSF3--AC027612.3^IGSF3^ENSG00000143061.18" ; gene_name IGSF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022751.4" ; havana_transcript "OTTHUMT00000059041.1" ; hgnc_id "HGNC:5950" ; level 2 ; orig_coord_info "chr1,116666284,116666326,-" ; protein_id "ENSP00000321184.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "IGSF3--AC027612.3^ENST00000318837.6" ; transcript_name "IGSF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
INSR--ARHGEF18 HAVANA gene 1001 32925 . + . FI_gene_label "INSR^ENSG00000171105.14" ; ID "INSR--ARHGEF18^INSR^ENSG00000171105.14" ; ccdsid "CCDS12176.1" ; exon_id "ENSE00001283493.7" ; exon_number 1 ; gene_id "INSR--ARHGEF18^INSR^ENSG00000171105.14" ; gene_name INSR ; gene_type protein_coding ; havana_gene "OTTHUMG00000181992.3" ; havana_transcript "OTTHUMT00000458544.2" ; hgnc_id "HGNC:6091" ; level 2 ; orig_coord_info "chr19,7293792,7293891,-" ; protein_id "ENSP00000303830.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "INSR--ARHGEF18^ENST00000302850.10" ; transcript_name "INSR-201" ; transcript_support_level 1 ; transcript_type protein_coding
INSR--ARHGEF18 HAVANA mRNA 1001 32925 . + . FI_gene_label "INSR^ENSG00000171105.14" ; ID "INSR--ARHGEF18^ENST00000302850.10" ; Parent "INSR--ARHGEF18^INSR^ENSG00000171105.14" ; ccdsid "CCDS12176.1" ; exon_id "ENSE00001283493.7" ; exon_number 1 ; gene_id "INSR--ARHGEF18^INSR^ENSG00000171105.14" ; gene_name INSR ; gene_type protein_coding ; havana_gene "OTTHUMG00000181992.3" ; havana_transcript "OTTHUMT00000458544.2" ; hgnc_id "HGNC:6091" ; level 2 ; orig_coord_info "chr19,7293792,7293891,-" ; protein_id "ENSP00000303830.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "INSR--ARHGEF18^ENST00000302850.10" ; transcript_name "INSR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
INSR--ARHGEF18 HAVANA gene 47015 67878 . + . FI_gene_label "ARHGEF18^ENSG00000104880.19" ; ID "INSR--ARHGEF18^ARHGEF18^ENSG00000104880.19" ; exon_id "ENSE00003546636.1" ; exon_number 2 ; gene_id "INSR--ARHGEF18^ARHGEF18^ENSG00000104880.19" ; gene_name ARHGEF18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177342.5" ; havana_transcript "OTTHUMT00000436339.2" ; hgnc_id "HGNC:17090" ; level 2 ; orig_coord_info "chr19,7440415,7440482,+" ; protein_id "ENSP00000319200.8" ; tag basic appris_alternative_2 ; transcript_id "INSR--ARHGEF18^ENST00000319670.14" ; transcript_name "ARHGEF18-201" ; transcript_support_level 1 ; transcript_type protein_coding
INSR--ARHGEF18 HAVANA mRNA 47015 67878 . + . FI_gene_label "ARHGEF18^ENSG00000104880.19" ; ID "INSR--ARHGEF18^ENST00000319670.14" ; Parent "INSR--ARHGEF18^ARHGEF18^ENSG00000104880.19" ; exon_id "ENSE00003546636.1" ; exon_number 2 ; gene_id "INSR--ARHGEF18^ARHGEF18^ENSG00000104880.19" ; gene_name ARHGEF18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177342.5" ; havana_transcript "OTTHUMT00000436339.2" ; hgnc_id "HGNC:17090" ; level 2 ; orig_coord_info "chr19,7440415,7440482,+" ; protein_id "ENSP00000319200.8" ; tag basic appris_alternative_2 ; transcript_id "INSR--ARHGEF18^ENST00000319670.14" ; transcript_name "ARHGEF18-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
L3MBTL4--LAMA1 HAVANA gene 1327 32903 . + . FI_gene_label "L3MBTL4^ENSG00000154655.16" ; ID "L3MBTL4--LAMA1^L3MBTL4^ENSG00000154655.16" ; ccdsid "CCDS82238.1" ; exon_id "ENSE00001277344.3" ; exon_number 3 ; gene_id "L3MBTL4--LAMA1^L3MBTL4^ENSG00000154655.16" ; gene_name L3MBTL4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178980.2" ; havana_transcript "OTTHUMT00000254449.1" ; hgnc_id "HGNC:26677" ; level 2 ; orig_coord_info "chr18,6311554,6311625,-" ; protein_id "ENSP00000318543.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "L3MBTL4--LAMA1^ENST00000317931.12" ; transcript_name "L3MBTL4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L3MBTL4--LAMA1 HAVANA mRNA 1327 32903 . + . FI_gene_label "L3MBTL4^ENSG00000154655.16" ; ID "L3MBTL4--LAMA1^ENST00000317931.12" ; Parent "L3MBTL4--LAMA1^L3MBTL4^ENSG00000154655.16" ; ccdsid "CCDS82238.1" ; exon_id "ENSE00001277344.3" ; exon_number 3 ; gene_id "L3MBTL4--LAMA1^L3MBTL4^ENSG00000154655.16" ; gene_name L3MBTL4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178980.2" ; havana_transcript "OTTHUMT00000254449.1" ; hgnc_id "HGNC:26677" ; level 2 ; orig_coord_info "chr18,6311554,6311625,-" ; protein_id "ENSP00000318543.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "L3MBTL4--LAMA1^ENST00000317931.12" ; transcript_name "L3MBTL4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
L3MBTL4--LAMA1 HAVANA gene 35915 102543 . + . FI_gene_label "LAMA1^ENSG00000101680.15" ; ID "L3MBTL4--LAMA1^LAMA1^ENSG00000101680.15" ; ccdsid "CCDS32787.1" ; exon_id "ENSE00001497139.2" ; exon_number 1 ; gene_id "L3MBTL4--LAMA1^LAMA1^ENSG00000101680.15" ; gene_name LAMA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133478.5" ; havana_transcript "OTTHUMT00000257369.2" ; hgnc_id "HGNC:6481" ; level 2 ; orig_coord_info "chr18,7117660,7117720,-" ; protein_id "ENSP00000374309.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "L3MBTL4--LAMA1^ENST00000389658.4" ; transcript_name "LAMA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L3MBTL4--LAMA1 HAVANA mRNA 35915 102543 . + . FI_gene_label "LAMA1^ENSG00000101680.15" ; ID "L3MBTL4--LAMA1^ENST00000389658.4" ; Parent "L3MBTL4--LAMA1^LAMA1^ENSG00000101680.15" ; ccdsid "CCDS32787.1" ; exon_id "ENSE00001497139.2" ; exon_number 1 ; gene_id "L3MBTL4--LAMA1^LAMA1^ENSG00000101680.15" ; gene_name LAMA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133478.5" ; havana_transcript "OTTHUMT00000257369.2" ; hgnc_id "HGNC:6481" ; level 2 ; orig_coord_info "chr18,7117660,7117720,-" ; protein_id "ENSP00000374309.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "L3MBTL4--LAMA1^ENST00000389658.4" ; transcript_name "LAMA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--AP002992.1 HAVANA gene 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--AP002992.1^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--AP002992.1^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--AP002992.1^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--AP002992.1 HAVANA mRNA 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--AP002992.1^ENST00000294304.12" ; Parent "LRP5--AP002992.1^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--AP002992.1^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--AP002992.1^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRRC14--PPP1R16A HAVANA gene 1001 8181 . + . FI_gene_label "LRRC14^ENSG00000160959.8" ; ID "LRRC14--PPP1R16A^LRRC14^ENSG00000160959.8" ; ccdsid "CCDS6432.1" ; exon_id "ENSE00001136013.1" ; exon_number 2 ; gene_id "LRRC14--PPP1R16A^LRRC14^ENSG00000160959.8" ; gene_name LRRC14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165179.4" ; havana_transcript "OTTHUMT00000382494.3" ; hgnc_id "HGNC:20419" ; level 2 ; orig_coord_info "chr8,144519726,144520054,+" ; protein_id "ENSP00000292524.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRRC14--PPP1R16A^ENST00000292524.6" ; transcript_name "LRRC14-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRRC14--PPP1R16A HAVANA mRNA 1001 8181 . + . FI_gene_label "LRRC14^ENSG00000160959.8" ; ID "LRRC14--PPP1R16A^ENST00000292524.6" ; Parent "LRRC14--PPP1R16A^LRRC14^ENSG00000160959.8" ; ccdsid "CCDS6432.1" ; exon_id "ENSE00001136013.1" ; exon_number 2 ; gene_id "LRRC14--PPP1R16A^LRRC14^ENSG00000160959.8" ; gene_name LRRC14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165179.4" ; havana_transcript "OTTHUMT00000382494.3" ; hgnc_id "HGNC:20419" ; level 2 ; orig_coord_info "chr8,144519726,144520054,+" ; protein_id "ENSP00000292524.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRRC14--PPP1R16A^ENST00000292524.6" ; transcript_name "LRRC14-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRRC14--PPP1R16A HAVANA gene 13432 21082 . + . FI_gene_label "PPP1R16A^ENSG00000160972.9" ; ID "LRRC14--PPP1R16A^PPP1R16A^ENSG00000160972.9" ; ccdsid "CCDS6429.1" ; exon_id "ENSE00001473528.2" ; exon_number 2 ; gene_id "LRRC14--PPP1R16A^PPP1R16A^ENSG00000160972.9" ; gene_name PPP1R16A ; gene_type protein_coding ; havana_gene "OTTHUMG00000165173.5" ; havana_transcript "OTTHUMT00000382459.1" ; hgnc_id "HGNC:14941" ; level 2 ; orig_coord_info "chr8,144497195,144497453,+" ; protein_id "ENSP00000292539.4" ; tag basic appris_principal_1 CCDS ; transcript_id "LRRC14--PPP1R16A^ENST00000292539.8" ; transcript_name "PPP1R16A-201" ; transcript_support_level 2 ; transcript_type protein_coding
LRRC14--PPP1R16A HAVANA mRNA 13432 21082 . + . FI_gene_label "PPP1R16A^ENSG00000160972.9" ; ID "LRRC14--PPP1R16A^ENST00000292539.8" ; Parent "LRRC14--PPP1R16A^PPP1R16A^ENSG00000160972.9" ; ccdsid "CCDS6429.1" ; exon_id "ENSE00001473528.2" ; exon_number 2 ; gene_id "LRRC14--PPP1R16A^PPP1R16A^ENSG00000160972.9" ; gene_name PPP1R16A ; gene_type protein_coding ; havana_gene "OTTHUMG00000165173.5" ; havana_transcript "OTTHUMT00000382459.1" ; hgnc_id "HGNC:14941" ; level 2 ; orig_coord_info "chr8,144497195,144497453,+" ; protein_id "ENSP00000292539.4" ; tag basic appris_principal_1 CCDS ; transcript_id "LRRC14--PPP1R16A^ENST00000292539.8" ; transcript_name "PPP1R16A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
LRRC24--PPP1R16A HAVANA gene 9971 17621 . + . FI_gene_label "PPP1R16A^ENSG00000160972.9" ; ID "LRRC24--PPP1R16A^PPP1R16A^ENSG00000160972.9" ; ccdsid "CCDS6429.1" ; exon_id "ENSE00001473528.2" ; exon_number 2 ; gene_id "LRRC24--PPP1R16A^PPP1R16A^ENSG00000160972.9" ; gene_name PPP1R16A ; gene_type protein_coding ; havana_gene "OTTHUMG00000165173.5" ; havana_transcript "OTTHUMT00000382459.1" ; hgnc_id "HGNC:14941" ; level 2 ; orig_coord_info "chr8,144497195,144497453,+" ; protein_id "ENSP00000292539.4" ; tag basic appris_principal_1 CCDS ; transcript_id "LRRC24--PPP1R16A^ENST00000292539.8" ; transcript_name "PPP1R16A-201" ; transcript_support_level 2 ; transcript_type protein_coding
LRRC24--PPP1R16A HAVANA mRNA 9971 17621 . + . FI_gene_label "PPP1R16A^ENSG00000160972.9" ; ID "LRRC24--PPP1R16A^ENST00000292539.8" ; Parent "LRRC24--PPP1R16A^PPP1R16A^ENSG00000160972.9" ; ccdsid "CCDS6429.1" ; exon_id "ENSE00001473528.2" ; exon_number 2 ; gene_id "LRRC24--PPP1R16A^PPP1R16A^ENSG00000160972.9" ; gene_name PPP1R16A ; gene_type protein_coding ; havana_gene "OTTHUMG00000165173.5" ; havana_transcript "OTTHUMT00000382459.1" ; hgnc_id "HGNC:14941" ; level 2 ; orig_coord_info "chr8,144497195,144497453,+" ; protein_id "ENSP00000292539.4" ; tag basic appris_principal_1 CCDS ; transcript_id "LRRC24--PPP1R16A^ENST00000292539.8" ; transcript_name "PPP1R16A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
LRRC24--PPP1R16A HAVANA gene 1001 4720 . + . FI_gene_label "LRRC24^ENSG00000254402.7" ; ID "LRRC24--PPP1R16A^LRRC24^ENSG00000254402.7" ; ccdsid "CCDS34969.1" ; exon_id "ENSE00002329789.1" ; exon_number 2 ; gene_id "LRRC24--PPP1R16A^LRRC24^ENSG00000254402.7" ; gene_name LRRC24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165180.3" ; havana_transcript "OTTHUMT00000382501.3" ; hgnc_id "HGNC:28947" ; level 2 ; orig_coord_info "chr8,144524816,144524974,-" ; protein_id "ENSP00000434849.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "LRRC24--PPP1R16A^ENST00000529415.7" ; transcript_name "LRRC24-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRRC24--PPP1R16A HAVANA mRNA 1001 4720 . + . FI_gene_label "LRRC24^ENSG00000254402.7" ; ID "LRRC24--PPP1R16A^ENST00000529415.7" ; Parent "LRRC24--PPP1R16A^LRRC24^ENSG00000254402.7" ; ccdsid "CCDS34969.1" ; exon_id "ENSE00002329789.1" ; exon_number 2 ; gene_id "LRRC24--PPP1R16A^LRRC24^ENSG00000254402.7" ; gene_name LRRC24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165180.3" ; havana_transcript "OTTHUMT00000382501.3" ; hgnc_id "HGNC:28947" ; level 2 ; orig_coord_info "chr8,144524816,144524974,-" ; protein_id "ENSP00000434849.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "LRRC24--PPP1R16A^ENST00000529415.7" ; transcript_name "LRRC24-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LUC7L3--ABCC3 HAVANA gene 1039 17722 . + . FI_gene_label "LUC7L3^ENSG00000108848.16" ; ID "LUC7L3--ABCC3^LUC7L3^ENSG00000108848.16" ; ccdsid "CCDS11573.1" ; exon_id "ENSE00001018561.1" ; exon_number 1 ; gene_id "LUC7L3--ABCC3^LUC7L3^ENSG00000108848.16" ; gene_name LUC7L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162257.13" ; havana_transcript "OTTHUMT00000368206.1" ; hgnc_id "HGNC:24309" ; level 2 ; orig_coord_info "chr17,50719733,50719831,+" ; protein_id "ENSP00000240304.1" ; tag alternative_3_UTR basic appris_principal_1 CCDS ; transcript_id "LUC7L3--ABCC3^ENST00000240304.5" ; transcript_name "LUC7L3-201" ; transcript_support_level 2 ; transcript_type protein_coding
LUC7L3--ABCC3 HAVANA mRNA 1039 17722 . + . FI_gene_label "LUC7L3^ENSG00000108848.16" ; ID "LUC7L3--ABCC3^ENST00000240304.5" ; Parent "LUC7L3--ABCC3^LUC7L3^ENSG00000108848.16" ; ccdsid "CCDS11573.1" ; exon_id "ENSE00001018561.1" ; exon_number 1 ; gene_id "LUC7L3--ABCC3^LUC7L3^ENSG00000108848.16" ; gene_name LUC7L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162257.13" ; havana_transcript "OTTHUMT00000368206.1" ; hgnc_id "HGNC:24309" ; level 2 ; orig_coord_info "chr17,50719733,50719831,+" ; protein_id "ENSP00000240304.1" ; tag alternative_3_UTR basic appris_principal_1 CCDS ; transcript_id "LUC7L3--ABCC3^ENST00000240304.5" ; transcript_name "LUC7L3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
LUC7L3--ABCC3 HAVANA gene 24337 53651 . + . FI_gene_label "ABCC3^ENSG00000108846.16" ; ID "LUC7L3--ABCC3^ABCC3^ENSG00000108846.16" ; ccdsid "CCDS32681.1" ; exon_id "ENSE00003842700.1" ; exon_number 1 ; gene_id "LUC7L3--ABCC3^ABCC3^ENSG00000108846.16" ; gene_name ABCC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162245.6" ; havana_transcript "OTTHUMT00000368083.3" ; hgnc_id "HGNC:54" ; level 2 ; orig_coord_info "chr17,50634937,50634981,+" ; protein_id "ENSP00000285238.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LUC7L3--ABCC3^ENST00000285238.13" ; transcript_name "ABCC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
LUC7L3--ABCC3 HAVANA mRNA 24337 53651 . + . FI_gene_label "ABCC3^ENSG00000108846.16" ; ID "LUC7L3--ABCC3^ENST00000285238.13" ; Parent "LUC7L3--ABCC3^ABCC3^ENSG00000108846.16" ; ccdsid "CCDS32681.1" ; exon_id "ENSE00003842700.1" ; exon_number 1 ; gene_id "LUC7L3--ABCC3^ABCC3^ENSG00000108846.16" ; gene_name ABCC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162245.6" ; havana_transcript "OTTHUMT00000368083.3" ; hgnc_id "HGNC:54" ; level 2 ; orig_coord_info "chr17,50634937,50634981,+" ; protein_id "ENSP00000285238.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LUC7L3--ABCC3^ENST00000285238.13" ; transcript_name "ABCC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAN1A2--SLC22A15 HAVANA gene 1001 23667 . + . FI_gene_label "MAN1A2^ENSG00000198162.12" ; ID "MAN1A2--SLC22A15^MAN1A2^ENSG00000198162.12" ; ccdsid "CCDS895.1" ; exon_id "ENSE00002687723.1" ; exon_number 1 ; gene_id "MAN1A2--SLC22A15^MAN1A2^ENSG00000198162.12" ; gene_name MAN1A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012149.2" ; havana_transcript "OTTHUMT00000033593.1" ; hgnc_id "HGNC:6822" ; level 2 ; orig_coord_info "chr1,117368184,117368485,+" ; protein_id "ENSP00000348959.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAN1A2--SLC22A15^ENST00000356554.7" ; transcript_name "MAN1A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAN1A2--SLC22A15 HAVANA mRNA 1001 23667 . + . FI_gene_label "MAN1A2^ENSG00000198162.12" ; ID "MAN1A2--SLC22A15^ENST00000356554.7" ; Parent "MAN1A2--SLC22A15^MAN1A2^ENSG00000198162.12" ; ccdsid "CCDS895.1" ; exon_id "ENSE00002687723.1" ; exon_number 1 ; gene_id "MAN1A2--SLC22A15^MAN1A2^ENSG00000198162.12" ; gene_name MAN1A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012149.2" ; havana_transcript "OTTHUMT00000033593.1" ; hgnc_id "HGNC:6822" ; level 2 ; orig_coord_info "chr1,117368184,117368485,+" ; protein_id "ENSP00000348959.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAN1A2--SLC22A15^ENST00000356554.7" ; transcript_name "MAN1A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAN1A2--SLC22A15 HAVANA gene 26769 33035 . + . FI_gene_label "SLC22A15^ENSG00000163393.13" ; ID "MAN1A2--SLC22A15^SLC22A15^ENSG00000163393.13" ; exon_id "ENSE00001450190.1" ; exon_number 1 ; gene_id "MAN1A2--SLC22A15^SLC22A15^ENSG00000163393.13" ; gene_name SLC22A15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012008.4" ; havana_transcript "OTTHUMT00000097502.1" ; hgnc_id "HGNC:20301" ; level 2 ; orig_coord_info "chr1,115976628,115976714,+" ; protein_id "ENSP00000358514.1" ; tag basic ; transcript_id "MAN1A2--SLC22A15^ENST00000369502.1" ; transcript_name "SLC22A15-201" ; transcript_support_level 2 ; transcript_type protein_coding
MAN1A2--SLC22A15 HAVANA mRNA 26769 33035 . + . FI_gene_label "SLC22A15^ENSG00000163393.13" ; ID "MAN1A2--SLC22A15^ENST00000369502.1" ; Parent "MAN1A2--SLC22A15^SLC22A15^ENSG00000163393.13" ; exon_id "ENSE00001450190.1" ; exon_number 1 ; gene_id "MAN1A2--SLC22A15^SLC22A15^ENSG00000163393.13" ; gene_name SLC22A15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012008.4" ; havana_transcript "OTTHUMT00000097502.1" ; hgnc_id "HGNC:20301" ; level 2 ; orig_coord_info "chr1,115976628,115976714,+" ; protein_id "ENSP00000358514.1" ; tag basic ; transcript_id "MAN1A2--SLC22A15^ENST00000369502.1" ; transcript_name "SLC22A15-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MAP3K6--MECR HAVANA gene 16559 31824 . + . FI_gene_label "MECR^ENSG00000116353.16" ; ID "MAP3K6--MECR^MECR^ENSG00000116353.16" ; ccdsid "CCDS30659.1" ; exon_id "ENSE00001897993.2" ; exon_number 1 ; gene_id "MAP3K6--MECR^MECR^ENSG00000116353.16" ; gene_name MECR ; gene_type protein_coding ; havana_gene "OTTHUMG00000059082.5" ; havana_transcript "OTTHUMT00000130740.2" ; hgnc_id "HGNC:19691" ; level 2 ; orig_coord_info "chr1,29230731,29230906,-" ; protein_id "ENSP00000263702.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP3K6--MECR^ENST00000263702.11" ; transcript_name "MECR-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAP3K6--MECR HAVANA mRNA 16559 31824 . + . FI_gene_label "MECR^ENSG00000116353.16" ; ID "MAP3K6--MECR^ENST00000263702.11" ; Parent "MAP3K6--MECR^MECR^ENSG00000116353.16" ; ccdsid "CCDS30659.1" ; exon_id "ENSE00001897993.2" ; exon_number 1 ; gene_id "MAP3K6--MECR^MECR^ENSG00000116353.16" ; gene_name MECR ; gene_type protein_coding ; havana_gene "OTTHUMG00000059082.5" ; havana_transcript "OTTHUMT00000130740.2" ; hgnc_id "HGNC:19691" ; level 2 ; orig_coord_info "chr1,29230731,29230906,-" ; protein_id "ENSP00000263702.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP3K6--MECR^ENST00000263702.11" ; transcript_name "MECR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAP3K6--MECR HAVANA gene 1001 12433 . + . FI_gene_label "MAP3K6^ENSG00000142733.17" ; ID "MAP3K6--MECR^MAP3K6^ENSG00000142733.17" ; ccdsid "CCDS299.1" ; exon_id "ENSE00001816251.2" ; exon_number 1 ; gene_id "MAP3K6--MECR^MAP3K6^ENSG00000142733.17" ; gene_name MAP3K6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004631.11" ; havana_transcript "OTTHUMT00000277002.3" ; hgnc_id "HGNC:6858" ; level 2 ; orig_coord_info "chr1,27366258,27366597,-" ; protein_id "ENSP00000350195.2" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "MAP3K6--MECR^ENST00000357582.3" ; transcript_name "MAP3K6-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAP3K6--MECR HAVANA mRNA 1001 12433 . + . FI_gene_label "MAP3K6^ENSG00000142733.17" ; ID "MAP3K6--MECR^ENST00000357582.3" ; Parent "MAP3K6--MECR^MAP3K6^ENSG00000142733.17" ; ccdsid "CCDS299.1" ; exon_id "ENSE00001816251.2" ; exon_number 1 ; gene_id "MAP3K6--MECR^MAP3K6^ENSG00000142733.17" ; gene_name MAP3K6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004631.11" ; havana_transcript "OTTHUMT00000277002.3" ; hgnc_id "HGNC:6858" ; level 2 ; orig_coord_info "chr1,27366258,27366597,-" ; protein_id "ENSP00000350195.2" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "MAP3K6--MECR^ENST00000357582.3" ; transcript_name "MAP3K6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MEGF8--CYP2B7P HAVANA gene 1027 32381 . + . FI_gene_label "MEGF8^ENSG00000105429.13" ; ID "MEGF8--CYP2B7P^MEGF8^ENSG00000105429.13" ; ccdsid "CCDS62693.1" ; exon_id "ENSE00003114512.2" ; exon_number 1 ; gene_id "MEGF8--CYP2B7P^MEGF8^ENSG00000105429.13" ; gene_name MEGF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150342.3" ; havana_transcript "OTTHUMT00000463854.2" ; hgnc_id "HGNC:3233" ; level 2 ; orig_coord_info "chr19,42326244,42326430,+" ; protein_id "ENSP00000251268.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MEGF8--CYP2B7P^ENST00000251268.11" ; transcript_name "MEGF8-201" ; transcript_support_level 5 ; transcript_type protein_coding
MEGF8--CYP2B7P HAVANA mRNA 1027 32381 . + . FI_gene_label "MEGF8^ENSG00000105429.13" ; ID "MEGF8--CYP2B7P^ENST00000251268.11" ; Parent "MEGF8--CYP2B7P^MEGF8^ENSG00000105429.13" ; ccdsid "CCDS62693.1" ; exon_id "ENSE00003114512.2" ; exon_number 1 ; gene_id "MEGF8--CYP2B7P^MEGF8^ENSG00000105429.13" ; gene_name MEGF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150342.3" ; havana_transcript "OTTHUMT00000463854.2" ; hgnc_id "HGNC:3233" ; level 2 ; orig_coord_info "chr19,42326244,42326430,+" ; protein_id "ENSP00000251268.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MEGF8--CYP2B7P^ENST00000251268.11" ; transcript_name "MEGF8-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NMT2--FAM171A1 HAVANA gene 20244 31425 . + . FI_gene_label "FAM171A1^ENSG00000148468.17" ; ID "NMT2--FAM171A1^FAM171A1^ENSG00000148468.17" ; ccdsid "CCDS31154.1" ; exon_id "ENSE00001923221.2" ; exon_number 1 ; gene_id "NMT2--FAM171A1^FAM171A1^ENSG00000148468.17" ; gene_name FAM171A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017732.3" ; havana_transcript "OTTHUMT00000046984.2" ; hgnc_id "HGNC:23522" ; level 2 ; orig_coord_info "chr10,15370956,15371052,-" ; protein_id "ENSP00000367356.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NMT2--FAM171A1^ENST00000378116.9" ; transcript_name "FAM171A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NMT2--FAM171A1 HAVANA mRNA 20244 31425 . + . FI_gene_label "FAM171A1^ENSG00000148468.17" ; ID "NMT2--FAM171A1^ENST00000378116.9" ; Parent "NMT2--FAM171A1^FAM171A1^ENSG00000148468.17" ; ccdsid "CCDS31154.1" ; exon_id "ENSE00001923221.2" ; exon_number 1 ; gene_id "NMT2--FAM171A1^FAM171A1^ENSG00000148468.17" ; gene_name FAM171A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017732.3" ; havana_transcript "OTTHUMT00000046984.2" ; hgnc_id "HGNC:23522" ; level 2 ; orig_coord_info "chr10,15370956,15371052,-" ; protein_id "ENSP00000367356.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NMT2--FAM171A1^ENST00000378116.9" ; transcript_name "FAM171A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NMT2--FAM171A1 HAVANA gene 1066 12619 . + . FI_gene_label "NMT2^ENSG00000152465.18" ; ID "NMT2--FAM171A1^NMT2^ENSG00000152465.18" ; ccdsid "CCDS76284.1" ; exon_id "ENSE00003310971.1" ; exon_number 1 ; gene_id "NMT2--FAM171A1^NMT2^ENSG00000152465.18" ; gene_name NMT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017723.3" ; havana_transcript "OTTHUMT00000046959.1" ; hgnc_id "HGNC:7858" ; level 2 ; orig_coord_info "chr10,15168503,15168530,-" ; protein_id "ENSP00000367392.1" ; tag basic CCDS ; transcript_id "NMT2--FAM171A1^ENST00000378150.1" ; transcript_name "NMT2-201" ; transcript_support_level 2 ; transcript_type protein_coding
NMT2--FAM171A1 HAVANA mRNA 1066 12619 . + . FI_gene_label "NMT2^ENSG00000152465.18" ; ID "NMT2--FAM171A1^ENST00000378150.1" ; Parent "NMT2--FAM171A1^NMT2^ENSG00000152465.18" ; ccdsid "CCDS76284.1" ; exon_id "ENSE00003310971.1" ; exon_number 1 ; gene_id "NMT2--FAM171A1^NMT2^ENSG00000152465.18" ; gene_name NMT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017723.3" ; havana_transcript "OTTHUMT00000046959.1" ; hgnc_id "HGNC:7858" ; level 2 ; orig_coord_info "chr10,15168503,15168530,-" ; protein_id "ENSP00000367392.1" ; tag basic CCDS ; transcript_id "NMT2--FAM171A1^ENST00000378150.1" ; transcript_name "NMT2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NPM1--MT-RNR2 HAVANA gene 1734 14723 . + . FI_gene_label "NPM1^ENSG00000181163.14" ; ID "NPM1--MT-RNR2^NPM1^ENSG00000181163.14" ; ccdsid "CCDS4376.1" ; exon_id "ENSE00003906984.1" ; exon_number 1 ; gene_id "NPM1--MT-RNR2^NPM1^ENSG00000181163.14" ; gene_name NPM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130465.4" ; havana_transcript "OTTHUMT00000252858.2" ; hgnc_id "HGNC:7910" ; level 2 ; orig_coord_info "chr5,171387949,171388006,+" ; protein_id "ENSP00000296930.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPM1--MT-RNR2^ENST00000296930.10" ; transcript_name "NPM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPM1--MT-RNR2 HAVANA mRNA 1734 14723 . + . FI_gene_label "NPM1^ENSG00000181163.14" ; ID "NPM1--MT-RNR2^ENST00000296930.10" ; Parent "NPM1--MT-RNR2^NPM1^ENSG00000181163.14" ; ccdsid "CCDS4376.1" ; exon_id "ENSE00003906984.1" ; exon_number 1 ; gene_id "NPM1--MT-RNR2^NPM1^ENSG00000181163.14" ; gene_name NPM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130465.4" ; havana_transcript "OTTHUMT00000252858.2" ; hgnc_id "HGNC:7910" ; level 2 ; orig_coord_info "chr5,171387949,171388006,+" ; protein_id "ENSP00000296930.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPM1--MT-RNR2^ENST00000296930.10" ; transcript_name "NPM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NRP1--FAM107B HAVANA gene 35742 58466 . + . FI_gene_label "FAM107B^ENSG00000065809.14" ; ID "NRP1--FAM107B^FAM107B^ENSG00000065809.14" ; ccdsid "CCDS7102.1" ; exon_id "ENSE00001364392.1" ; exon_number 1 ; gene_id "NRP1--FAM107B^FAM107B^ENSG00000065809.14" ; gene_name FAM107B ; gene_type protein_coding ; havana_gene "OTTHUMG00000017709.4" ; havana_transcript "OTTHUMT00000356966.1" ; hgnc_id "HGNC:23726" ; level 2 ; orig_coord_info "chr10,14774253,14774663,-" ; protein_id "ENSP00000181796.2" ; tag basic MANE_Select CCDS ; transcript_id "NRP1--FAM107B^ENST00000181796.7" ; transcript_name "FAM107B-201" ; transcript_support_level 2 ; transcript_type protein_coding
NRP1--FAM107B HAVANA mRNA 35742 58466 . + . FI_gene_label "FAM107B^ENSG00000065809.14" ; ID "NRP1--FAM107B^ENST00000181796.7" ; Parent "NRP1--FAM107B^FAM107B^ENSG00000065809.14" ; ccdsid "CCDS7102.1" ; exon_id "ENSE00001364392.1" ; exon_number 1 ; gene_id "NRP1--FAM107B^FAM107B^ENSG00000065809.14" ; gene_name FAM107B ; gene_type protein_coding ; havana_gene "OTTHUMG00000017709.4" ; havana_transcript "OTTHUMT00000356966.1" ; hgnc_id "HGNC:23726" ; level 2 ; orig_coord_info "chr10,14774253,14774663,-" ; protein_id "ENSP00000181796.2" ; tag basic MANE_Select CCDS ; transcript_id "NRP1--FAM107B^ENST00000181796.7" ; transcript_name "FAM107B-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NRP1--FAM107B HAVANA gene 1001 32741 . + . FI_gene_label "NRP1^ENSG00000099250.18" ; ID "NRP1--FAM107B^NRP1^ENSG00000099250.18" ; ccdsid "CCDS7177.1" ; exon_id "ENSE00001465117.2" ; exon_number 2 ; gene_id "NRP1--FAM107B^NRP1^ENSG00000099250.18" ; gene_name NRP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019343.8" ; havana_transcript "OTTHUMT00000051203.2" ; hgnc_id "HGNC:8004" ; level 2 ; orig_coord_info "chr10,33334310,33334382,-" ; protein_id "ENSP00000265371.3" ; tag alternative_5_UTR basic appris_principal_3 CCDS ; transcript_id "NRP1--FAM107B^ENST00000265371.8" ; transcript_name "NRP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
NRP1--FAM107B HAVANA mRNA 1001 32741 . + . FI_gene_label "NRP1^ENSG00000099250.18" ; ID "NRP1--FAM107B^ENST00000265371.8" ; Parent "NRP1--FAM107B^NRP1^ENSG00000099250.18" ; ccdsid "CCDS7177.1" ; exon_id "ENSE00001465117.2" ; exon_number 2 ; gene_id "NRP1--FAM107B^NRP1^ENSG00000099250.18" ; gene_name NRP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019343.8" ; havana_transcript "OTTHUMT00000051203.2" ; hgnc_id "HGNC:8004" ; level 2 ; orig_coord_info "chr10,33334310,33334382,-" ; protein_id "ENSP00000265371.3" ; tag alternative_5_UTR basic appris_principal_3 CCDS ; transcript_id "NRP1--FAM107B^ENST00000265371.8" ; transcript_name "NRP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
OPHN1--PJA1 HAVANA gene 1419 47031 . + . FI_gene_label "OPHN1^ENSG00000079482.14" ; ID "OPHN1--PJA1^OPHN1^ENSG00000079482.14" ; ccdsid "CCDS14388.1" ; exon_id "ENSE00001464287.1" ; exon_number 2 ; gene_id "OPHN1--PJA1^OPHN1^ENSG00000079482.14" ; gene_name OPHN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021744.2" ; havana_transcript "OTTHUMT00000057011.2" ; hgnc_id "HGNC:8148" ; level 2 ; orig_coord_info "chrX,68432867,68433020,-" ; protein_id "ENSP00000347710.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "OPHN1--PJA1^ENST00000355520.6" ; transcript_name "OPHN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
OPHN1--PJA1 HAVANA mRNA 1419 47031 . + . FI_gene_label "OPHN1^ENSG00000079482.14" ; ID "OPHN1--PJA1^ENST00000355520.6" ; Parent "OPHN1--PJA1^OPHN1^ENSG00000079482.14" ; ccdsid "CCDS14388.1" ; exon_id "ENSE00001464287.1" ; exon_number 2 ; gene_id "OPHN1--PJA1^OPHN1^ENSG00000079482.14" ; gene_name OPHN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021744.2" ; havana_transcript "OTTHUMT00000057011.2" ; hgnc_id "HGNC:8148" ; level 2 ; orig_coord_info "chrX,68432867,68433020,-" ; protein_id "ENSP00000347710.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "OPHN1--PJA1^ENST00000355520.6" ; transcript_name "OPHN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OPHN1--PJA1 HAVANA gene 51269 55102 . + . FI_gene_label "PJA1^ENSG00000181191.12" ; ID "OPHN1--PJA1^PJA1^ENSG00000181191.12" ; ccdsid "CCDS14393.1" ; exon_id "ENSE00002250136.1" ; exon_number 2 ; gene_id "OPHN1--PJA1^PJA1^ENSG00000181191.12" ; gene_name PJA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021753.7" ; havana_transcript "OTTHUMT00000057031.2" ; hgnc_id "HGNC:16648" ; level 2 ; orig_coord_info "chrX,69161310,69163238,-" ; protein_id "ENSP00000355014.1" ; tag basic appris_principal_4 CCDS ; transcript_id "OPHN1--PJA1^ENST00000361478.1" ; transcript_name "PJA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
OPHN1--PJA1 HAVANA mRNA 51269 55102 . + . FI_gene_label "PJA1^ENSG00000181191.12" ; ID "OPHN1--PJA1^ENST00000361478.1" ; Parent "OPHN1--PJA1^PJA1^ENSG00000181191.12" ; ccdsid "CCDS14393.1" ; exon_id "ENSE00002250136.1" ; exon_number 2 ; gene_id "OPHN1--PJA1^PJA1^ENSG00000181191.12" ; gene_name PJA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021753.7" ; havana_transcript "OTTHUMT00000057031.2" ; hgnc_id "HGNC:16648" ; level 2 ; orig_coord_info "chrX,69161310,69163238,-" ; protein_id "ENSP00000355014.1" ; tag basic appris_principal_4 CCDS ; transcript_id "OPHN1--PJA1^ENST00000361478.1" ; transcript_name "PJA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PFKFB3--AKR1E2 HAVANA gene 30269 41099 . + . FI_gene_label "AKR1E2^ENSG00000165568.18" ; ID "PFKFB3--AKR1E2^AKR1E2^ENSG00000165568.18" ; ccdsid "CCDS31134.1" ; exon_id "ENSE00002184920.2" ; exon_number 1 ; gene_id "PFKFB3--AKR1E2^AKR1E2^ENSG00000165568.18" ; gene_name AKR1E2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017577.12" ; havana_transcript "OTTHUMT00000046520.5" ; hgnc_id "HGNC:23437" ; level 2 ; orig_coord_info "chr10,4826325,4826363,+" ; protein_id "ENSP00000298375.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PFKFB3--AKR1E2^ENST00000298375.12" ; transcript_name "AKR1E2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PFKFB3--AKR1E2 HAVANA mRNA 30269 41099 . + . FI_gene_label "AKR1E2^ENSG00000165568.18" ; ID "PFKFB3--AKR1E2^ENST00000298375.12" ; Parent "PFKFB3--AKR1E2^AKR1E2^ENSG00000165568.18" ; ccdsid "CCDS31134.1" ; exon_id "ENSE00002184920.2" ; exon_number 1 ; gene_id "PFKFB3--AKR1E2^AKR1E2^ENSG00000165568.18" ; gene_name AKR1E2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017577.12" ; havana_transcript "OTTHUMT00000046520.5" ; hgnc_id "HGNC:23437" ; level 2 ; orig_coord_info "chr10,4826325,4826363,+" ; protein_id "ENSP00000298375.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PFKFB3--AKR1E2^ENST00000298375.12" ; transcript_name "AKR1E2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PFKFB3--AKR1E2 HAVANA gene 4441 17976 . + . FI_gene_label "PFKFB3^ENSG00000170525.21" ; ID "PFKFB3--AKR1E2^PFKFB3^ENSG00000170525.21" ; exon_id "ENSE00002181820.1" ; exon_number 1 ; gene_id "PFKFB3--AKR1E2^PFKFB3^ENSG00000170525.21" ; gene_name PFKFB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017621.6" ; havana_transcript "OTTHUMT00000046660.1" ; hgnc_id "HGNC:8874" ; level 2 ; orig_coord_info "chr10,6203261,6203336,+" ; protein_id "ENSP00000369105.3" ; tag basic appris_alternative_1 ; transcript_id "PFKFB3--AKR1E2^ENST00000317350.8" ; transcript_name "PFKFB3-201" ; transcript_support_level 5 ; transcript_type protein_coding
PFKFB3--AKR1E2 HAVANA mRNA 4441 17976 . + . FI_gene_label "PFKFB3^ENSG00000170525.21" ; ID "PFKFB3--AKR1E2^ENST00000317350.8" ; Parent "PFKFB3--AKR1E2^PFKFB3^ENSG00000170525.21" ; exon_id "ENSE00002181820.1" ; exon_number 1 ; gene_id "PFKFB3--AKR1E2^PFKFB3^ENSG00000170525.21" ; gene_name PFKFB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017621.6" ; havana_transcript "OTTHUMT00000046660.1" ; hgnc_id "HGNC:8874" ; level 2 ; orig_coord_info "chr10,6203261,6203336,+" ; protein_id "ENSP00000369105.3" ; tag basic appris_alternative_1 ; transcript_id "PFKFB3--AKR1E2^ENST00000317350.8" ; transcript_name "PFKFB3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PGAM5--XYLT2 HAVANA gene 11941 20646 . + . FI_gene_label "XYLT2^ENSG00000015532.10" ; ID "PGAM5--XYLT2^XYLT2^ENSG00000015532.10" ; ccdsid "CCDS11563.1" ; exon_id "ENSE00001292962.4" ; exon_number 1 ; gene_id "PGAM5--XYLT2^XYLT2^ENSG00000015532.10" ; gene_name XYLT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162057.5" ; havana_transcript "OTTHUMT00000367046.2" ; hgnc_id "HGNC:15517" ; level 2 ; orig_coord_info "chr17,50346141,50346275,+" ; protein_id "ENSP00000017003.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGAM5--XYLT2^ENST00000017003.7" ; transcript_name "XYLT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PGAM5--XYLT2 HAVANA mRNA 11941 20646 . + . FI_gene_label "XYLT2^ENSG00000015532.10" ; ID "PGAM5--XYLT2^ENST00000017003.7" ; Parent "PGAM5--XYLT2^XYLT2^ENSG00000015532.10" ; ccdsid "CCDS11563.1" ; exon_id "ENSE00001292962.4" ; exon_number 1 ; gene_id "PGAM5--XYLT2^XYLT2^ENSG00000015532.10" ; gene_name XYLT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162057.5" ; havana_transcript "OTTHUMT00000367046.2" ; hgnc_id "HGNC:15517" ; level 2 ; orig_coord_info "chr17,50346141,50346275,+" ; protein_id "ENSP00000017003.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGAM5--XYLT2^ENST00000017003.7" ; transcript_name "XYLT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PGAM5--XYLT2 HAVANA gene 1001 5883 . + . FI_gene_label "PGAM5^ENSG00000247077.7" ; ID "PGAM5--XYLT2^PGAM5^ENSG00000247077.7" ; ccdsid "CCDS9280.1" ; exon_id "ENSE00001218114.4" ; exon_number 1 ; gene_id "PGAM5--XYLT2^PGAM5^ENSG00000247077.7" ; gene_name PGAM5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168021.3" ; havana_transcript "OTTHUMT00000397561.1" ; hgnc_id "HGNC:28763" ; level 2 ; orig_coord_info "chr12,132710877,132711067,+" ; protein_id "ENSP00000321503.2" ; tag basic CCDS ; transcript_id "PGAM5--XYLT2^ENST00000317555.6" ; transcript_name "PGAM5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PGAM5--XYLT2 HAVANA mRNA 1001 5883 . + . FI_gene_label "PGAM5^ENSG00000247077.7" ; ID "PGAM5--XYLT2^ENST00000317555.6" ; Parent "PGAM5--XYLT2^PGAM5^ENSG00000247077.7" ; ccdsid "CCDS9280.1" ; exon_id "ENSE00001218114.4" ; exon_number 1 ; gene_id "PGAM5--XYLT2^PGAM5^ENSG00000247077.7" ; gene_name PGAM5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168021.3" ; havana_transcript "OTTHUMT00000397561.1" ; hgnc_id "HGNC:28763" ; level 2 ; orig_coord_info "chr12,132710877,132711067,+" ; protein_id "ENSP00000321503.2" ; tag basic CCDS ; transcript_id "PGAM5--XYLT2^ENST00000317555.6" ; transcript_name "PGAM5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PKD1--NPIPB12 HAVANA gene 1001 30973 . + . FI_gene_label "PKD1^ENSG00000008710.20" ; ID "PKD1--NPIPB12^PKD1^ENSG00000008710.20" ; ccdsid "CCDS32369.1" ; exon_id "ENSE00002710399.1" ; exon_number 1 ; gene_id "PKD1--NPIPB12^PKD1^ENSG00000008710.20" ; gene_name PKD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155795.6" ; havana_transcript "OTTHUMT00000341688.2" ; hgnc_id "HGNC:9008" ; level 2 ; orig_coord_info "chr16,2135475,2135689,-" ; protein_id "ENSP00000262304.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "PKD1--NPIPB12^ENST00000262304.9" ; transcript_name "PKD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PKD1--NPIPB12 HAVANA mRNA 1001 30973 . + . FI_gene_label "PKD1^ENSG00000008710.20" ; ID "PKD1--NPIPB12^ENST00000262304.9" ; Parent "PKD1--NPIPB12^PKD1^ENSG00000008710.20" ; ccdsid "CCDS32369.1" ; exon_id "ENSE00002710399.1" ; exon_number 1 ; gene_id "PKD1--NPIPB12^PKD1^ENSG00000008710.20" ; gene_name PKD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155795.6" ; havana_transcript "OTTHUMT00000341688.2" ; hgnc_id "HGNC:9008" ; level 2 ; orig_coord_info "chr16,2135475,2135689,-" ; protein_id "ENSP00000262304.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "PKD1--NPIPB12^ENST00000262304.9" ; transcript_name "PKD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PKD1--NPIPB12 ENSEMBL gene 42932 45149 . + . FI_gene_label "NPIPB12^ENSG00000169203.16" ; ID "PKD1--NPIPB12^NPIPB12^ENSG00000169203.16" ; exon_id "ENSE00001744303.2" ; exon_number 1 ; gene_id "PKD1--NPIPB12^NPIPB12^ENSG00000169203.16" ; gene_name NPIPB12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163547.2" ; hgnc_id "HGNC:37491" ; level 3 ; orig_coord_info "chr16,29485263,29485827,-" ; protein_id "ENSP00000399107.3" ; tag basic appris_alternative_2 ; transcript_id "PKD1--NPIPB12^ENST00000458643.3" ; transcript_name "NPIPB12-201" ; transcript_support_level 5 ; transcript_type protein_coding
PKD1--NPIPB12 ENSEMBL mRNA 42932 45149 . + . FI_gene_label "NPIPB12^ENSG00000169203.16" ; ID "PKD1--NPIPB12^ENST00000458643.3" ; Parent "PKD1--NPIPB12^NPIPB12^ENSG00000169203.16" ; exon_id "ENSE00001744303.2" ; exon_number 1 ; gene_id "PKD1--NPIPB12^NPIPB12^ENSG00000169203.16" ; gene_name NPIPB12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163547.2" ; hgnc_id "HGNC:37491" ; level 3 ; orig_coord_info "chr16,29485263,29485827,-" ; protein_id "ENSP00000399107.3" ; tag basic appris_alternative_2 ; transcript_id "PKD1--NPIPB12^ENST00000458643.3" ; transcript_name "NPIPB12-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PPL--AC023830.1 HAVANA gene 2179 23448 . + . FI_gene_label "PPL^ENSG00000118898.16" ; ID "PPL--AC023830.1^PPL^ENSG00000118898.16" ; ccdsid "CCDS10526.1" ; exon_id "ENSE00001318895.4" ; exon_number 1 ; gene_id "PPL--AC023830.1^PPL^ENSG00000118898.16" ; gene_name PPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000129528.9" ; havana_transcript "OTTHUMT00000251715.2" ; hgnc_id "HGNC:9273" ; level 2 ; orig_coord_info "chr16,4936984,4937045,-" ; protein_id "ENSP00000340510.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PPL--AC023830.1^ENST00000345988.7" ; transcript_name "PPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPL--AC023830.1 HAVANA mRNA 2179 23448 . + . FI_gene_label "PPL^ENSG00000118898.16" ; ID "PPL--AC023830.1^ENST00000345988.7" ; Parent "PPL--AC023830.1^PPL^ENSG00000118898.16" ; ccdsid "CCDS10526.1" ; exon_id "ENSE00001318895.4" ; exon_number 1 ; gene_id "PPL--AC023830.1^PPL^ENSG00000118898.16" ; gene_name PPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000129528.9" ; havana_transcript "OTTHUMT00000251715.2" ; hgnc_id "HGNC:9273" ; level 2 ; orig_coord_info "chr16,4936984,4937045,-" ; protein_id "ENSP00000340510.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PPL--AC023830.1^ENST00000345988.7" ; transcript_name "PPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPN20--BMS1P7 ENSEMBL gene 1043 20316 . + . FI_gene_label "PTPN20^ENSG00000204179.10" ; ID "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; ccdsid "CCDS73114.1" ; exon_id "ENSE00003719491.1" ; exon_number 4 ; gene_id "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; gene_name PTPN20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018094.10" ; hgnc_id "HGNC:23423" ; level 3 ; orig_coord_info "chr10,46946579,46946675,+" ; protein_id "ENSP00000363335.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PTPN20--BMS1P7^ENST00000374218.6" ; transcript_name "PTPN20-201" ; transcript_support_level 5 ; transcript_type protein_coding
PTPN20--BMS1P7 ENSEMBL mRNA 1043 20316 . + . FI_gene_label "PTPN20^ENSG00000204179.10" ; ID "PTPN20--BMS1P7^ENST00000374218.6" ; Parent "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; ccdsid "CCDS73114.1" ; exon_id "ENSE00003719491.1" ; exon_number 4 ; gene_id "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; gene_name PTPN20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018094.10" ; hgnc_id "HGNC:23423" ; level 3 ; orig_coord_info "chr10,46946579,46946675,+" ; protein_id "ENSP00000363335.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PTPN20--BMS1P7^ENST00000374218.6" ; transcript_name "PTPN20-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RB1--AP005901.1 HAVANA gene 1008 32308 . + . FI_gene_label "RB1^ENSG00000139687.16" ; ID "RB1--AP005901.1^RB1^ENSG00000139687.16" ; ccdsid "CCDS31973.1" ; exon_id "ENSE00003816215.2" ; exon_number 1 ; gene_id "RB1--AP005901.1^RB1^ENSG00000139687.16" ; gene_name RB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016900.7" ; havana_transcript "OTTHUMT00000044884.2" ; hgnc_id "HGNC:9884" ; level 1 ; orig_coord_info "chr13,48303913,48304049,+" ; protein_id "ENSP00000267163.4" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "RB1--AP005901.1^ENST00000267163.6" ; transcript_name "RB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RB1--AP005901.1 HAVANA mRNA 1008 32308 . + . FI_gene_label "RB1^ENSG00000139687.16" ; ID "RB1--AP005901.1^ENST00000267163.6" ; Parent "RB1--AP005901.1^RB1^ENSG00000139687.16" ; ccdsid "CCDS31973.1" ; exon_id "ENSE00003816215.2" ; exon_number 1 ; gene_id "RB1--AP005901.1^RB1^ENSG00000139687.16" ; gene_name RB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016900.7" ; havana_transcript "OTTHUMT00000044884.2" ; hgnc_id "HGNC:9884" ; level 1 ; orig_coord_info "chr13,48303913,48304049,+" ; protein_id "ENSP00000267163.4" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "RB1--AP005901.1^ENST00000267163.6" ; transcript_name "RB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RB1--ROCK1 HAVANA gene 1008 32308 . + . FI_gene_label "RB1^ENSG00000139687.16" ; ID "RB1--ROCK1^RB1^ENSG00000139687.16" ; ccdsid "CCDS31973.1" ; exon_id "ENSE00003816215.2" ; exon_number 1 ; gene_id "RB1--ROCK1^RB1^ENSG00000139687.16" ; gene_name RB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016900.7" ; havana_transcript "OTTHUMT00000044884.2" ; hgnc_id "HGNC:9884" ; level 1 ; orig_coord_info "chr13,48303913,48304049,+" ; protein_id "ENSP00000267163.4" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "RB1--ROCK1^ENST00000267163.6" ; transcript_name "RB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RB1--ROCK1 HAVANA mRNA 1008 32308 . + . FI_gene_label "RB1^ENSG00000139687.16" ; ID "RB1--ROCK1^ENST00000267163.6" ; Parent "RB1--ROCK1^RB1^ENSG00000139687.16" ; ccdsid "CCDS31973.1" ; exon_id "ENSE00003816215.2" ; exon_number 1 ; gene_id "RB1--ROCK1^RB1^ENSG00000139687.16" ; gene_name RB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016900.7" ; havana_transcript "OTTHUMT00000044884.2" ; hgnc_id "HGNC:9884" ; level 1 ; orig_coord_info "chr13,48303913,48304049,+" ; protein_id "ENSP00000267163.4" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "RB1--ROCK1^ENST00000267163.6" ; transcript_name "RB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RB1--ROCK1 HAVANA gene 36444 74214 . + . FI_gene_label "ROCK1^ENSG00000067900.8" ; ID "RB1--ROCK1^ROCK1^ENSG00000067900.8" ; ccdsid "CCDS11870.2" ; exon_id "ENSE00001540250.2" ; exon_number 1 ; gene_id "RB1--ROCK1^ROCK1^ENSG00000067900.8" ; gene_name ROCK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131723.5" ; havana_transcript "OTTHUMT00000254641.3" ; hgnc_id "HGNC:10251" ; level 2 ; orig_coord_info "chr18,21110818,21110910,-" ; protein_id "ENSP00000382697.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RB1--ROCK1^ENST00000399799.3" ; transcript_name "ROCK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RB1--ROCK1 HAVANA mRNA 36444 74214 . + . FI_gene_label "ROCK1^ENSG00000067900.8" ; ID "RB1--ROCK1^ENST00000399799.3" ; Parent "RB1--ROCK1^ROCK1^ENSG00000067900.8" ; ccdsid "CCDS11870.2" ; exon_id "ENSE00001540250.2" ; exon_number 1 ; gene_id "RB1--ROCK1^ROCK1^ENSG00000067900.8" ; gene_name ROCK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131723.5" ; havana_transcript "OTTHUMT00000254641.3" ; hgnc_id "HGNC:10251" ; level 2 ; orig_coord_info "chr18,21110818,21110910,-" ; protein_id "ENSP00000382697.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RB1--ROCK1^ENST00000399799.3" ; transcript_name "ROCK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM6--AC108199.1 HAVANA gene 1144 26383 . + . FI_gene_label "RBM6^ENSG00000004534.15" ; ID "RBM6--AC108199.1^RBM6^ENSG00000004534.15" ; ccdsid "CCDS2809.1" ; exon_id "ENSE00003569056.1" ; exon_number 2 ; gene_id "RBM6--AC108199.1^RBM6^ENSG00000004534.15" ; gene_name RBM6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156736.13" ; havana_transcript "OTTHUMT00000345528.6" ; hgnc_id "HGNC:9903" ; level 2 ; orig_coord_info "chr3,49962642,49962685,+" ; protein_id "ENSP00000266022.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RBM6--AC108199.1^ENST00000266022.9" ; transcript_name "RBM6-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM6--AC108199.1 HAVANA mRNA 1144 26383 . + . FI_gene_label "RBM6^ENSG00000004534.15" ; ID "RBM6--AC108199.1^ENST00000266022.9" ; Parent "RBM6--AC108199.1^RBM6^ENSG00000004534.15" ; ccdsid "CCDS2809.1" ; exon_id "ENSE00003569056.1" ; exon_number 2 ; gene_id "RBM6--AC108199.1^RBM6^ENSG00000004534.15" ; gene_name RBM6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156736.13" ; havana_transcript "OTTHUMT00000345528.6" ; hgnc_id "HGNC:9903" ; level 2 ; orig_coord_info "chr3,49962642,49962685,+" ; protein_id "ENSP00000266022.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RBM6--AC108199.1^ENST00000266022.9" ; transcript_name "RBM6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RCC1--GNAS HAVANA gene 32215 45971 . + . FI_gene_label "GNAS^ENSG00000087460.28" ; ID "RCC1--GNAS^GNAS^ENSG00000087460.28" ; ccdsid "CCDS42892.1" ; exon_id "ENSE00001831111.1" ; exon_number 1 ; gene_id "RCC1--GNAS^GNAS^ENSG00000087460.28" ; gene_name GNAS ; gene_type protein_coding ; havana_gene "OTTHUMG00000033069.23" ; havana_transcript "OTTHUMT00000080451.1" ; hgnc_id "HGNC:4392" ; level 2 ; orig_coord_info "chr20,58891727,58891865,+" ; protein_id "ENSP00000265620.7" ; tag basic appris_principal_3 CCDS ; transcript_id "RCC1--GNAS^ENST00000265620.11" ; transcript_name "GNAS-201" ; transcript_support_level 1 ; transcript_type protein_coding
RCC1--GNAS HAVANA mRNA 32215 45971 . + . FI_gene_label "GNAS^ENSG00000087460.28" ; ID "RCC1--GNAS^ENST00000265620.11" ; Parent "RCC1--GNAS^GNAS^ENSG00000087460.28" ; ccdsid "CCDS42892.1" ; exon_id "ENSE00001831111.1" ; exon_number 1 ; gene_id "RCC1--GNAS^GNAS^ENSG00000087460.28" ; gene_name GNAS ; gene_type protein_coding ; havana_gene "OTTHUMG00000033069.23" ; havana_transcript "OTTHUMT00000080451.1" ; hgnc_id "HGNC:4392" ; level 2 ; orig_coord_info "chr20,58891727,58891865,+" ; protein_id "ENSP00000265620.7" ; tag basic appris_principal_3 CCDS ; transcript_id "RCC1--GNAS^ENST00000265620.11" ; transcript_name "GNAS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RCC1--GNAS HAVANA gene 6213 14741 . + . FI_gene_label "RCC1^ENSG00000180198.16" ; ID "RCC1--GNAS^RCC1^ENSG00000180198.16" ; ccdsid "CCDS41295.1" ; exon_id "ENSE00003621347.1" ; exon_number 2 ; gene_id "RCC1--GNAS^RCC1^ENSG00000180198.16" ; gene_name RCC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000003645.13" ; havana_transcript "OTTHUMT00000010324.2" ; hgnc_id "HGNC:1913" ; level 2 ; orig_coord_info "chr1,28529867,28529939,+" ; protein_id "ENSP00000362937.3" ; tag basic CCDS ; transcript_id "RCC1--GNAS^ENST00000373831.7" ; transcript_name "RCC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RCC1--GNAS HAVANA mRNA 6213 14741 . + . FI_gene_label "RCC1^ENSG00000180198.16" ; ID "RCC1--GNAS^ENST00000373831.7" ; Parent "RCC1--GNAS^RCC1^ENSG00000180198.16" ; ccdsid "CCDS41295.1" ; exon_id "ENSE00003621347.1" ; exon_number 2 ; gene_id "RCC1--GNAS^RCC1^ENSG00000180198.16" ; gene_name RCC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000003645.13" ; havana_transcript "OTTHUMT00000010324.2" ; hgnc_id "HGNC:1913" ; level 2 ; orig_coord_info "chr1,28529867,28529939,+" ; protein_id "ENSP00000362937.3" ; tag basic CCDS ; transcript_id "RCC1--GNAS^ENST00000373831.7" ; transcript_name "RCC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF115--HJV HAVANA gene 24266 28283 . + . FI_gene_label "HJV^ENSG00000168509.20" ; ID "RNF115--HJV^HJV^ENSG00000168509.20" ; ccdsid "CCDS72879.1" ; exon_id "ENSE00001435872.1" ; exon_number 2 ; gene_id "RNF115--HJV^HJV^ENSG00000168509.20" ; gene_name HJV ; gene_type protein_coding ; havana_gene "OTTHUMG00000013748.7" ; havana_transcript "OTTHUMT00000038527.3" ; hgnc_id "HGNC:4887" ; level 2 ; orig_coord_info "chr1,146020135,146020231,-" ; protein_id "ENSP00000337014.5" ; tag upstream_uORF basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF115--HJV^ENST00000336751.11" ; transcript_name "HJV-201" ; transcript_support_level 2 ; transcript_type protein_coding
RNF115--HJV HAVANA mRNA 24266 28283 . + . FI_gene_label "HJV^ENSG00000168509.20" ; ID "RNF115--HJV^ENST00000336751.11" ; Parent "RNF115--HJV^HJV^ENSG00000168509.20" ; ccdsid "CCDS72879.1" ; exon_id "ENSE00001435872.1" ; exon_number 2 ; gene_id "RNF115--HJV^HJV^ENSG00000168509.20" ; gene_name HJV ; gene_type protein_coding ; havana_gene "OTTHUMG00000013748.7" ; havana_transcript "OTTHUMT00000038527.3" ; hgnc_id "HGNC:4887" ; level 2 ; orig_coord_info "chr1,146020135,146020231,-" ; protein_id "ENSP00000337014.5" ; tag upstream_uORF basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF115--HJV^ENST00000336751.11" ; transcript_name "HJV-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RNF115--HJV HAVANA gene 1001 19993 . + . FI_gene_label "RNF115^ENSG00000265491.5" ; ID "RNF115--HJV^RNF115^ENSG00000265491.5" ; ccdsid "CCDS72863.1" ; exon_id "ENSE00002694107.5" ; exon_number 1 ; gene_id "RNF115--HJV^RNF115^ENSG00000265491.5" ; gene_name RNF115 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013758.7" ; havana_transcript "OTTHUMT00000038554.5" ; hgnc_id "HGNC:18154" ; level 2 ; orig_coord_info "chr1,145823772,145823873,-" ; protein_id "ENSP00000463650.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF115--HJV^ENST00000582693.5" ; transcript_name "RNF115-202" ; transcript_support_level 1 ; transcript_type protein_coding
RNF115--HJV HAVANA mRNA 1001 19993 . + . FI_gene_label "RNF115^ENSG00000265491.5" ; ID "RNF115--HJV^ENST00000582693.5" ; Parent "RNF115--HJV^RNF115^ENSG00000265491.5" ; ccdsid "CCDS72863.1" ; exon_id "ENSE00002694107.5" ; exon_number 1 ; gene_id "RNF115--HJV^RNF115^ENSG00000265491.5" ; gene_name RNF115 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013758.7" ; havana_transcript "OTTHUMT00000038554.5" ; hgnc_id "HGNC:18154" ; level 2 ; orig_coord_info "chr1,145823772,145823873,-" ; protein_id "ENSP00000463650.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF115--HJV^ENST00000582693.5" ; transcript_name "RNF115-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNGTT--FARS2 HAVANA gene 23748 33128 . + . FI_gene_label "FARS2^ENSG00000145982.13" ; ID "RNGTT--FARS2^FARS2^ENSG00000145982.13" ; ccdsid "CCDS4494.1" ; exon_id "ENSE00001125682.3" ; exon_number 2 ; gene_id "RNGTT--FARS2^FARS2^ENSG00000145982.13" ; gene_name FARS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014178.6" ; havana_transcript "OTTHUMT00000039746.2" ; hgnc_id "HGNC:21062" ; level 2 ; orig_coord_info "chr6,5368571,5369182,+" ; protein_id "ENSP00000274680.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNGTT--FARS2^ENST00000274680.9" ; transcript_name "FARS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNGTT--FARS2 HAVANA mRNA 23748 33128 . + . FI_gene_label "FARS2^ENSG00000145982.13" ; ID "RNGTT--FARS2^ENST00000274680.9" ; Parent "RNGTT--FARS2^FARS2^ENSG00000145982.13" ; ccdsid "CCDS4494.1" ; exon_id "ENSE00001125682.3" ; exon_number 2 ; gene_id "RNGTT--FARS2^FARS2^ENSG00000145982.13" ; gene_name FARS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014178.6" ; havana_transcript "OTTHUMT00000039746.2" ; hgnc_id "HGNC:21062" ; level 2 ; orig_coord_info "chr6,5368571,5369182,+" ; protein_id "ENSP00000274680.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNGTT--FARS2^ENST00000274680.9" ; transcript_name "FARS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNGTT--FARS2 HAVANA gene 1210 17456 . + . FI_gene_label "RNGTT^ENSG00000111880.16" ; ID "RNGTT--FARS2^RNGTT^ENSG00000111880.16" ; ccdsid "CCDS69153.1" ; exon_id "ENSE00002223802.2" ; exon_number 1 ; gene_id "RNGTT--FARS2^RNGTT^ENSG00000111880.16" ; gene_name RNGTT ; gene_type protein_coding ; havana_gene "OTTHUMG00000015190.5" ; havana_transcript "OTTHUMT00000484165.2" ; hgnc_id "HGNC:10073" ; level 2 ; orig_coord_info "chr6,88963346,88963409,-" ; protein_id "ENSP00000358487.4" ; tag basic CCDS ; transcript_id "RNGTT--FARS2^ENST00000369475.7" ; transcript_name "RNGTT-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNGTT--FARS2 HAVANA mRNA 1210 17456 . + . FI_gene_label "RNGTT^ENSG00000111880.16" ; ID "RNGTT--FARS2^ENST00000369475.7" ; Parent "RNGTT--FARS2^RNGTT^ENSG00000111880.16" ; ccdsid "CCDS69153.1" ; exon_id "ENSE00002223802.2" ; exon_number 1 ; gene_id "RNGTT--FARS2^RNGTT^ENSG00000111880.16" ; gene_name RNGTT ; gene_type protein_coding ; havana_gene "OTTHUMG00000015190.5" ; havana_transcript "OTTHUMT00000484165.2" ; hgnc_id "HGNC:10073" ; level 2 ; orig_coord_info "chr6,88963346,88963409,-" ; protein_id "ENSP00000358487.4" ; tag basic CCDS ; transcript_id "RNGTT--FARS2^ENST00000369475.7" ; transcript_name "RNGTT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNU2-64P--GXYLT2 HAVANA gene 4192 13812 . + . FI_gene_label "GXYLT2^ENSG00000172986.13" ; ID "RNU2-64P--GXYLT2^GXYLT2^ENSG00000172986.13" ; ccdsid "CCDS46870.1" ; exon_id "ENSE00001506376.3" ; exon_number 1 ; gene_id "RNU2-64P--GXYLT2^GXYLT2^ENSG00000172986.13" ; gene_name GXYLT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158815.3" ; havana_transcript "OTTHUMT00000352318.2" ; hgnc_id "HGNC:33383" ; level 2 ; orig_coord_info "chr3,72888234,72888508,+" ; protein_id "ENSP00000374268.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNU2-64P--GXYLT2^ENST00000389617.9" ; transcript_name "GXYLT2-201" ; transcript_support_level 5 ; transcript_type protein_coding
RNU2-64P--GXYLT2 HAVANA mRNA 4192 13812 . + . FI_gene_label "GXYLT2^ENSG00000172986.13" ; ID "RNU2-64P--GXYLT2^ENST00000389617.9" ; Parent "RNU2-64P--GXYLT2^GXYLT2^ENSG00000172986.13" ; ccdsid "CCDS46870.1" ; exon_id "ENSE00001506376.3" ; exon_number 1 ; gene_id "RNU2-64P--GXYLT2^GXYLT2^ENSG00000172986.13" ; gene_name GXYLT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158815.3" ; havana_transcript "OTTHUMT00000352318.2" ; hgnc_id "HGNC:33383" ; level 2 ; orig_coord_info "chr3,72888234,72888508,+" ; protein_id "ENSP00000374268.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNU2-64P--GXYLT2^ENST00000389617.9" ; transcript_name "GXYLT2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ROR1--ALG6 HAVANA gene 19261 38264 . + . FI_gene_label "ALG6^ENSG00000088035.18" ; ID "ROR1--ALG6^ALG6^ENSG00000088035.18" ; ccdsid "CCDS30735.1" ; exon_id "ENSE00002308325.1" ; exon_number 2 ; gene_id "ROR1--ALG6^ALG6^ENSG00000088035.18" ; gene_name ALG6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009140.9" ; havana_transcript "OTTHUMT00000500747.2" ; hgnc_id "HGNC:23157" ; level 2 ; orig_coord_info "chr1,63370978,63371059,+" ; protein_id "ENSP00000263440.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROR1--ALG6^ENST00000263440.6" ; transcript_name "ALG6-201" ; transcript_support_level 5 ; transcript_type protein_coding
ROR1--ALG6 HAVANA mRNA 19261 38264 . + . FI_gene_label "ALG6^ENSG00000088035.18" ; ID "ROR1--ALG6^ENST00000263440.6" ; Parent "ROR1--ALG6^ALG6^ENSG00000088035.18" ; ccdsid "CCDS30735.1" ; exon_id "ENSE00002308325.1" ; exon_number 2 ; gene_id "ROR1--ALG6^ALG6^ENSG00000088035.18" ; gene_name ALG6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009140.9" ; havana_transcript "OTTHUMT00000500747.2" ; hgnc_id "HGNC:23157" ; level 2 ; orig_coord_info "chr1,63370978,63371059,+" ; protein_id "ENSP00000263440.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROR1--ALG6^ENST00000263440.6" ; transcript_name "ALG6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ROR1--ALG6 HAVANA gene 1001 16208 . + . FI_gene_label "ROR1^ENSG00000185483.12" ; ID "ROR1--ALG6^ROR1^ENSG00000185483.12" ; ccdsid "CCDS626.1" ; exon_id "ENSE00001454305.2" ; exon_number 1 ; gene_id "ROR1--ALG6^ROR1^ENSG00000185483.12" ; gene_name ROR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009022.2" ; havana_transcript "OTTHUMT00000025002.2" ; hgnc_id "HGNC:10256" ; level 2 ; orig_coord_info "chr1,63774418,63774508,+" ; protein_id "ENSP00000360120.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROR1--ALG6^ENST00000371079.6" ; transcript_name "ROR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ROR1--ALG6 HAVANA mRNA 1001 16208 . + . FI_gene_label "ROR1^ENSG00000185483.12" ; ID "ROR1--ALG6^ENST00000371079.6" ; Parent "ROR1--ALG6^ROR1^ENSG00000185483.12" ; ccdsid "CCDS626.1" ; exon_id "ENSE00001454305.2" ; exon_number 1 ; gene_id "ROR1--ALG6^ROR1^ENSG00000185483.12" ; gene_name ROR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009022.2" ; havana_transcript "OTTHUMT00000025002.2" ; hgnc_id "HGNC:10256" ; level 2 ; orig_coord_info "chr1,63774418,63774508,+" ; protein_id "ENSP00000360120.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROR1--ALG6^ENST00000371079.6" ; transcript_name "ROR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SCRIB--EPPK1 HAVANA gene 1395 19002 . + . FI_gene_label "SCRIB^ENSG00000180900.20" ; ID "SCRIB--EPPK1^SCRIB^ENSG00000180900.20" ; ccdsid "CCDS6411.1" ; exon_id "ENSE00002704241.1" ; exon_number 1 ; gene_id "SCRIB--EPPK1^SCRIB^ENSG00000180900.20" ; gene_name SCRIB ; gene_type protein_coding ; havana_gene "OTTHUMG00000165154.7" ; havana_transcript "OTTHUMT00000382215.2" ; hgnc_id "HGNC:30377" ; level 2 ; orig_coord_info "chr8,143815214,143815372,-" ; protein_id "ENSP00000322938.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SCRIB--EPPK1^ENST00000320476.7" ; transcript_name "SCRIB-201" ; transcript_support_level 1 ; transcript_type protein_coding
SCRIB--EPPK1 HAVANA mRNA 1395 19002 . + . FI_gene_label "SCRIB^ENSG00000180900.20" ; ID "SCRIB--EPPK1^ENST00000320476.7" ; Parent "SCRIB--EPPK1^SCRIB^ENSG00000180900.20" ; ccdsid "CCDS6411.1" ; exon_id "ENSE00002704241.1" ; exon_number 1 ; gene_id "SCRIB--EPPK1^SCRIB^ENSG00000180900.20" ; gene_name SCRIB ; gene_type protein_coding ; havana_gene "OTTHUMG00000165154.7" ; havana_transcript "OTTHUMT00000382215.2" ; hgnc_id "HGNC:30377" ; level 2 ; orig_coord_info "chr8,143815214,143815372,-" ; protein_id "ENSP00000322938.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SCRIB--EPPK1^ENST00000320476.7" ; transcript_name "SCRIB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SCRIB--EPPK1 ENSEMBL gene 23065 38594 . + . FI_gene_label "EPPK1^ENSG00000261150.3" ; ID "SCRIB--EPPK1^EPPK1^ENSG00000261150.3" ; exon_id "ENSE00002602443.2" ; exon_number 1 ; gene_id "SCRIB--EPPK1^EPPK1^ENSG00000261150.3" ; gene_name EPPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165206.4" ; hgnc_id "HGNC:15577" ; level 3 ; orig_coord_info "chr8,143857990,143873178,-" ; protein_id "ENSP00000456124.2" ; tag basic appris_alternative_2 ; transcript_id "SCRIB--EPPK1^ENST00000568225.2" ; transcript_name "EPPK1-201" ; transcript_support_level NA ; transcript_type protein_coding
SCRIB--EPPK1 ENSEMBL mRNA 23065 38594 . + . FI_gene_label "EPPK1^ENSG00000261150.3" ; ID "SCRIB--EPPK1^ENST00000568225.2" ; Parent "SCRIB--EPPK1^EPPK1^ENSG00000261150.3" ; exon_id "ENSE00002602443.2" ; exon_number 1 ; gene_id "SCRIB--EPPK1^EPPK1^ENSG00000261150.3" ; gene_name EPPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165206.4" ; hgnc_id "HGNC:15577" ; level 3 ; orig_coord_info "chr8,143857990,143873178,-" ; protein_id "ENSP00000456124.2" ; tag basic appris_alternative_2 ; transcript_id "SCRIB--EPPK1^ENST00000568225.2" ; transcript_name "EPPK1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
SCRIB--NRBP2 HAVANA gene 1395 19002 . + . FI_gene_label "SCRIB^ENSG00000180900.20" ; ID "SCRIB--NRBP2^SCRIB^ENSG00000180900.20" ; ccdsid "CCDS6411.1" ; exon_id "ENSE00002704241.1" ; exon_number 1 ; gene_id "SCRIB--NRBP2^SCRIB^ENSG00000180900.20" ; gene_name SCRIB ; gene_type protein_coding ; havana_gene "OTTHUMG00000165154.7" ; havana_transcript "OTTHUMT00000382215.2" ; hgnc_id "HGNC:30377" ; level 2 ; orig_coord_info "chr8,143815214,143815372,-" ; protein_id "ENSP00000322938.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SCRIB--NRBP2^ENST00000320476.7" ; transcript_name "SCRIB-201" ; transcript_support_level 1 ; transcript_type protein_coding
SCRIB--NRBP2 HAVANA mRNA 1395 19002 . + . FI_gene_label "SCRIB^ENSG00000180900.20" ; ID "SCRIB--NRBP2^ENST00000320476.7" ; Parent "SCRIB--NRBP2^SCRIB^ENSG00000180900.20" ; ccdsid "CCDS6411.1" ; exon_id "ENSE00002704241.1" ; exon_number 1 ; gene_id "SCRIB--NRBP2^SCRIB^ENSG00000180900.20" ; gene_name SCRIB ; gene_type protein_coding ; havana_gene "OTTHUMG00000165154.7" ; havana_transcript "OTTHUMT00000382215.2" ; hgnc_id "HGNC:30377" ; level 2 ; orig_coord_info "chr8,143815214,143815372,-" ; protein_id "ENSP00000322938.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SCRIB--NRBP2^ENST00000320476.7" ; transcript_name "SCRIB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SCRIB--NRBP2 HAVANA gene 22003 29393 . + . FI_gene_label "NRBP2^ENSG00000185189.18" ; ID "SCRIB--NRBP2^NRBP2^ENSG00000185189.18" ; ccdsid "CCDS34959.2" ; exon_id "ENSE00002182232.2" ; exon_number 1 ; gene_id "SCRIB--NRBP2^NRBP2^ENSG00000185189.18" ; gene_name NRBP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165157.3" ; havana_transcript "OTTHUMT00000382247.2" ; hgnc_id "HGNC:19339" ; level 2 ; orig_coord_info "chr8,143840706,143840834,-" ; protein_id "ENSP00000414055.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCRIB--NRBP2^ENST00000442628.7" ; transcript_name "NRBP2-202" ; transcript_support_level 2 ; transcript_type protein_coding
SCRIB--NRBP2 HAVANA mRNA 22003 29393 . + . FI_gene_label "NRBP2^ENSG00000185189.18" ; ID "SCRIB--NRBP2^ENST00000442628.7" ; Parent "SCRIB--NRBP2^NRBP2^ENSG00000185189.18" ; ccdsid "CCDS34959.2" ; exon_id "ENSE00002182232.2" ; exon_number 1 ; gene_id "SCRIB--NRBP2^NRBP2^ENSG00000185189.18" ; gene_name NRBP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165157.3" ; havana_transcript "OTTHUMT00000382247.2" ; hgnc_id "HGNC:19339" ; level 2 ; orig_coord_info "chr8,143840706,143840834,-" ; protein_id "ENSP00000414055.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCRIB--NRBP2^ENST00000442628.7" ; transcript_name "NRBP2-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SEC22B--PDE4DIP HAVANA gene 36453 61220 . + . FI_gene_label "PDE4DIP^ENSG00000178104.19" ; ID "SEC22B--PDE4DIP^PDE4DIP^ENSG00000178104.19" ; ccdsid "CCDS72894.1" ; exon_id "ENSE00001212743.8" ; exon_number 1 ; gene_id "SEC22B--PDE4DIP^PDE4DIP^ENSG00000178104.19" ; gene_name PDE4DIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000013846.16" ; havana_transcript "OTTHUMT00000038861.3" ; hgnc_id "HGNC:15580" ; level 2 ; orig_coord_info "chr1,148952781,148953905,+" ; protein_id "ENSP00000316434.9" ; tag basic CCDS ; transcript_id "SEC22B--PDE4DIP^ENST00000313431.13" ; transcript_name "PDE4DIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
SEC22B--PDE4DIP HAVANA mRNA 36453 61220 . + . FI_gene_label "PDE4DIP^ENSG00000178104.19" ; ID "SEC22B--PDE4DIP^ENST00000313431.13" ; Parent "SEC22B--PDE4DIP^PDE4DIP^ENSG00000178104.19" ; ccdsid "CCDS72894.1" ; exon_id "ENSE00001212743.8" ; exon_number 1 ; gene_id "SEC22B--PDE4DIP^PDE4DIP^ENSG00000178104.19" ; gene_name PDE4DIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000013846.16" ; havana_transcript "OTTHUMT00000038861.3" ; hgnc_id "HGNC:15580" ; level 2 ; orig_coord_info "chr1,148952781,148953905,+" ; protein_id "ENSP00000316434.9" ; tag basic CCDS ; transcript_id "SEC22B--PDE4DIP^ENST00000313431.13" ; transcript_name "PDE4DIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SEC22B--PDE4DIP HAVANA gene 1001 14118 . + . FI_gene_label "SEC22B^ENSG00000265808.4" ; ID "SEC22B--PDE4DIP^SEC22B^ENSG00000265808.4" ; ccdsid "CCDS83523.1" ; exon_id "ENSE00002727263.4" ; exon_number 1 ; gene_id "SEC22B--PDE4DIP^SEC22B^ENSG00000265808.4" ; gene_name SEC22B ; gene_type protein_coding ; havana_gene "OTTHUMG00000185008.4" ; havana_transcript "OTTHUMT00000469430.3" ; hgnc_id "HGNC:10700" ; level 2 ; orig_coord_info "chr1,120176307,120176381,-" ; protein_id "ENSP00000463393.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SEC22B--PDE4DIP^ENST00000578049.4" ; transcript_name "SEC22B-201" ; transcript_support_level 1 ; transcript_type protein_coding
SEC22B--PDE4DIP HAVANA mRNA 1001 14118 . + . FI_gene_label "SEC22B^ENSG00000265808.4" ; ID "SEC22B--PDE4DIP^ENST00000578049.4" ; Parent "SEC22B--PDE4DIP^SEC22B^ENSG00000265808.4" ; ccdsid "CCDS83523.1" ; exon_id "ENSE00002727263.4" ; exon_number 1 ; gene_id "SEC22B--PDE4DIP^SEC22B^ENSG00000265808.4" ; gene_name SEC22B ; gene_type protein_coding ; havana_gene "OTTHUMG00000185008.4" ; havana_transcript "OTTHUMT00000469430.3" ; hgnc_id "HGNC:10700" ; level 2 ; orig_coord_info "chr1,120176307,120176381,-" ; protein_id "ENSP00000463393.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SEC22B--PDE4DIP^ENST00000578049.4" ; transcript_name "SEC22B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SEC22B2P--PDE4DIP HAVANA gene 26908 51675 . + . FI_gene_label "PDE4DIP^ENSG00000178104.19" ; ID "SEC22B2P--PDE4DIP^PDE4DIP^ENSG00000178104.19" ; ccdsid "CCDS72894.1" ; exon_id "ENSE00001212743.8" ; exon_number 1 ; gene_id "SEC22B2P--PDE4DIP^PDE4DIP^ENSG00000178104.19" ; gene_name PDE4DIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000013846.16" ; havana_transcript "OTTHUMT00000038861.3" ; hgnc_id "HGNC:15580" ; level 2 ; orig_coord_info "chr1,148952781,148953905,+" ; protein_id "ENSP00000316434.9" ; tag basic CCDS ; transcript_id "SEC22B2P--PDE4DIP^ENST00000313431.13" ; transcript_name "PDE4DIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
SEC22B2P--PDE4DIP HAVANA mRNA 26908 51675 . + . FI_gene_label "PDE4DIP^ENSG00000178104.19" ; ID "SEC22B2P--PDE4DIP^ENST00000313431.13" ; Parent "SEC22B2P--PDE4DIP^PDE4DIP^ENSG00000178104.19" ; ccdsid "CCDS72894.1" ; exon_id "ENSE00001212743.8" ; exon_number 1 ; gene_id "SEC22B2P--PDE4DIP^PDE4DIP^ENSG00000178104.19" ; gene_name PDE4DIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000013846.16" ; havana_transcript "OTTHUMT00000038861.3" ; hgnc_id "HGNC:15580" ; level 2 ; orig_coord_info "chr1,148952781,148953905,+" ; protein_id "ENSP00000316434.9" ; tag basic CCDS ; transcript_id "SEC22B2P--PDE4DIP^ENST00000313431.13" ; transcript_name "PDE4DIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SF3A2--DOT1L HAVANA gene 1001 8345 . + . FI_gene_label "SF3A2^ENSG00000104897.10" ; ID "SF3A2--DOT1L^SF3A2^ENSG00000104897.10" ; ccdsid "CCDS12084.1" ; exon_id "ENSE00003710697.1" ; exon_number 2 ; gene_id "SF3A2--DOT1L^SF3A2^ENSG00000104897.10" ; gene_name SF3A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180414.5" ; havana_transcript "OTTHUMT00000451268.5" ; hgnc_id "HGNC:10766" ; level 2 ; orig_coord_info "chr19,2243419,2243544,+" ; protein_id "ENSP00000221494.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SF3A2--DOT1L^ENST00000221494.10" ; transcript_name "SF3A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SF3A2--DOT1L HAVANA mRNA 1001 8345 . + . FI_gene_label "SF3A2^ENSG00000104897.10" ; ID "SF3A2--DOT1L^ENST00000221494.10" ; Parent "SF3A2--DOT1L^SF3A2^ENSG00000104897.10" ; ccdsid "CCDS12084.1" ; exon_id "ENSE00003710697.1" ; exon_number 2 ; gene_id "SF3A2--DOT1L^SF3A2^ENSG00000104897.10" ; gene_name SF3A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180414.5" ; havana_transcript "OTTHUMT00000451268.5" ; hgnc_id "HGNC:10766" ; level 2 ; orig_coord_info "chr19,2243419,2243544,+" ; protein_id "ENSP00000221494.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SF3A2--DOT1L^ENST00000221494.10" ; transcript_name "SF3A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SF3A2--DOT1L HAVANA gene 11346 44877 . + . FI_gene_label "DOT1L^ENSG00000104885.18" ; ID "SF3A2--DOT1L^DOT1L^ENSG00000104885.18" ; ccdsid "CCDS42460.1" ; exon_id "ENSE00001215883.6" ; exon_number 1 ; gene_id "SF3A2--DOT1L^DOT1L^ENSG00000104885.18" ; gene_name DOT1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000150431.7" ; havana_transcript "OTTHUMT00000318066.2" ; hgnc_id "HGNC:24948" ; level 2 ; orig_coord_info "chr19,2164185,2164265,+" ; protein_id "ENSP00000381657.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SF3A2--DOT1L^ENST00000398665.8" ; transcript_name "DOT1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
SF3A2--DOT1L HAVANA mRNA 11346 44877 . + . FI_gene_label "DOT1L^ENSG00000104885.18" ; ID "SF3A2--DOT1L^ENST00000398665.8" ; Parent "SF3A2--DOT1L^DOT1L^ENSG00000104885.18" ; ccdsid "CCDS42460.1" ; exon_id "ENSE00001215883.6" ; exon_number 1 ; gene_id "SF3A2--DOT1L^DOT1L^ENSG00000104885.18" ; gene_name DOT1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000150431.7" ; havana_transcript "OTTHUMT00000318066.2" ; hgnc_id "HGNC:24948" ; level 2 ; orig_coord_info "chr19,2164185,2164265,+" ; protein_id "ENSP00000381657.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SF3A2--DOT1L^ENST00000398665.8" ; transcript_name "DOT1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC22A15--MAN1A2 HAVANA gene 20374 43040 . + . FI_gene_label "MAN1A2^ENSG00000198162.12" ; ID "SLC22A15--MAN1A2^MAN1A2^ENSG00000198162.12" ; ccdsid "CCDS895.1" ; exon_id "ENSE00002687723.1" ; exon_number 1 ; gene_id "SLC22A15--MAN1A2^MAN1A2^ENSG00000198162.12" ; gene_name MAN1A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012149.2" ; havana_transcript "OTTHUMT00000033593.1" ; hgnc_id "HGNC:6822" ; level 2 ; orig_coord_info "chr1,117368184,117368485,+" ; protein_id "ENSP00000348959.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC22A15--MAN1A2^ENST00000356554.7" ; transcript_name "MAN1A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC22A15--MAN1A2 HAVANA mRNA 20374 43040 . + . FI_gene_label "MAN1A2^ENSG00000198162.12" ; ID "SLC22A15--MAN1A2^ENST00000356554.7" ; Parent "SLC22A15--MAN1A2^MAN1A2^ENSG00000198162.12" ; ccdsid "CCDS895.1" ; exon_id "ENSE00002687723.1" ; exon_number 1 ; gene_id "SLC22A15--MAN1A2^MAN1A2^ENSG00000198162.12" ; gene_name MAN1A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012149.2" ; havana_transcript "OTTHUMT00000033593.1" ; hgnc_id "HGNC:6822" ; level 2 ; orig_coord_info "chr1,117368184,117368485,+" ; protein_id "ENSP00000348959.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC22A15--MAN1A2^ENST00000356554.7" ; transcript_name "MAN1A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC22A15--MAN1A2 HAVANA gene 1102 7368 . + . FI_gene_label "SLC22A15^ENSG00000163393.13" ; ID "SLC22A15--MAN1A2^SLC22A15^ENSG00000163393.13" ; exon_id "ENSE00001450190.1" ; exon_number 1 ; gene_id "SLC22A15--MAN1A2^SLC22A15^ENSG00000163393.13" ; gene_name SLC22A15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012008.4" ; havana_transcript "OTTHUMT00000097502.1" ; hgnc_id "HGNC:20301" ; level 2 ; orig_coord_info "chr1,115976628,115976714,+" ; protein_id "ENSP00000358514.1" ; tag basic ; transcript_id "SLC22A15--MAN1A2^ENST00000369502.1" ; transcript_name "SLC22A15-201" ; transcript_support_level 2 ; transcript_type protein_coding
SLC22A15--MAN1A2 HAVANA mRNA 1102 7368 . + . FI_gene_label "SLC22A15^ENSG00000163393.13" ; ID "SLC22A15--MAN1A2^ENST00000369502.1" ; Parent "SLC22A15--MAN1A2^SLC22A15^ENSG00000163393.13" ; exon_id "ENSE00001450190.1" ; exon_number 1 ; gene_id "SLC22A15--MAN1A2^SLC22A15^ENSG00000163393.13" ; gene_name SLC22A15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012008.4" ; havana_transcript "OTTHUMT00000097502.1" ; hgnc_id "HGNC:20301" ; level 2 ; orig_coord_info "chr1,115976628,115976714,+" ; protein_id "ENSP00000358514.1" ; tag basic ; transcript_id "SLC22A15--MAN1A2^ENST00000369502.1" ; transcript_name "SLC22A15-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SRPK2--LAMB4 HAVANA gene 30919 71532 . + . FI_gene_label "LAMB4^ENSG00000091128.13" ; ID "SRPK2--LAMB4^LAMB4^ENSG00000091128.13" ; ccdsid "CCDS34732.1" ; exon_id "ENSE00001403083.1" ; exon_number 2 ; gene_id "SRPK2--LAMB4^LAMB4^ENSG00000091128.13" ; gene_name LAMB4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154874.7" ; havana_transcript "OTTHUMT00000337442.1" ; hgnc_id "HGNC:6491" ; level 2 ; orig_coord_info "chr7,108123131,108123164,-" ; protein_id "ENSP00000205386.4" ; tag basic appris_principal_1 CCDS ; transcript_id "SRPK2--LAMB4^ENST00000205386.8" ; transcript_name "LAMB4-201" ; transcript_support_level 1 ; transcript_type protein_coding
SRPK2--LAMB4 HAVANA mRNA 30919 71532 . + . FI_gene_label "LAMB4^ENSG00000091128.13" ; ID "SRPK2--LAMB4^ENST00000205386.8" ; Parent "SRPK2--LAMB4^LAMB4^ENSG00000091128.13" ; ccdsid "CCDS34732.1" ; exon_id "ENSE00001403083.1" ; exon_number 2 ; gene_id "SRPK2--LAMB4^LAMB4^ENSG00000091128.13" ; gene_name LAMB4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154874.7" ; havana_transcript "OTTHUMT00000337442.1" ; hgnc_id "HGNC:6491" ; level 2 ; orig_coord_info "chr7,108123131,108123164,-" ; protein_id "ENSP00000205386.4" ; tag basic appris_principal_1 CCDS ; transcript_id "SRPK2--LAMB4^ENST00000205386.8" ; transcript_name "LAMB4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SRPK2--LAMB4 HAVANA gene 7189 25319 . + . FI_gene_label "SRPK2^ENSG00000135250.17" ; ID "SRPK2--LAMB4^SRPK2^ENSG00000135250.17" ; ccdsid "CCDS5735.1" ; exon_id "ENSE00001414518.3" ; exon_number 1 ; gene_id "SRPK2--LAMB4^SRPK2^ENSG00000135250.17" ; gene_name SRPK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157405.3" ; havana_transcript "OTTHUMT00000348716.1" ; hgnc_id "HGNC:11306" ; level 2 ; orig_coord_info "chr7,105268806,105268843,-" ; protein_id "ENSP00000349863.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "SRPK2--LAMB4^ENST00000357311.7" ; transcript_name "SRPK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SRPK2--LAMB4 HAVANA mRNA 7189 25319 . + . FI_gene_label "SRPK2^ENSG00000135250.17" ; ID "SRPK2--LAMB4^ENST00000357311.7" ; Parent "SRPK2--LAMB4^SRPK2^ENSG00000135250.17" ; ccdsid "CCDS5735.1" ; exon_id "ENSE00001414518.3" ; exon_number 1 ; gene_id "SRPK2--LAMB4^SRPK2^ENSG00000135250.17" ; gene_name SRPK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157405.3" ; havana_transcript "OTTHUMT00000348716.1" ; hgnc_id "HGNC:11306" ; level 2 ; orig_coord_info "chr7,105268806,105268843,-" ; protein_id "ENSP00000349863.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "SRPK2--LAMB4^ENST00000357311.7" ; transcript_name "SRPK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STAG3L4--TYW1 HAVANA gene 16178 34340 . + . FI_gene_label "TYW1^ENSG00000198874.13" ; ID "STAG3L4--TYW1^TYW1^ENSG00000198874.13" ; ccdsid "CCDS5538.1" ; exon_id "ENSE00001947681.2" ; exon_number 1 ; gene_id "STAG3L4--TYW1^TYW1^ENSG00000198874.13" ; gene_name TYW1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129723.5" ; havana_transcript "OTTHUMT00000251932.3" ; hgnc_id "HGNC:25598" ; level 2 ; orig_coord_info "chr7,66996979,66996982,+" ; protein_id "ENSP00000352645.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STAG3L4--TYW1^ENST00000359626.10" ; transcript_name "TYW1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STAG3L4--TYW1 HAVANA mRNA 16178 34340 . + . FI_gene_label "TYW1^ENSG00000198874.13" ; ID "STAG3L4--TYW1^ENST00000359626.10" ; Parent "STAG3L4--TYW1^TYW1^ENSG00000198874.13" ; ccdsid "CCDS5538.1" ; exon_id "ENSE00001947681.2" ; exon_number 1 ; gene_id "STAG3L4--TYW1^TYW1^ENSG00000198874.13" ; gene_name TYW1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129723.5" ; havana_transcript "OTTHUMT00000251932.3" ; hgnc_id "HGNC:25598" ; level 2 ; orig_coord_info "chr7,66996979,66996982,+" ; protein_id "ENSP00000352645.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STAG3L4--TYW1^ENST00000359626.10" ; transcript_name "TYW1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAMM41--IQSEC1 HAVANA gene 1001 17131 . + . FI_gene_label "TAMM41^ENSG00000144559.10" ; ID "TAMM41--IQSEC1^TAMM41^ENSG00000144559.10" ; ccdsid "CCDS2607.1" ; exon_id "ENSE00001866827.1" ; exon_number 1 ; gene_id "TAMM41--IQSEC1^TAMM41^ENSG00000144559.10" ; gene_name TAMM41 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129741.4" ; havana_transcript "OTTHUMT00000251952.3" ; hgnc_id "HGNC:25187" ; level 2 ; orig_coord_info "chr3,11846502,11846636,-" ; protein_id "ENSP00000273037.5" ; tag basic CCDS ; transcript_id "TAMM41--IQSEC1^ENST00000273037.9" ; transcript_name "TAMM41-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAMM41--IQSEC1 HAVANA mRNA 1001 17131 . + . FI_gene_label "TAMM41^ENSG00000144559.10" ; ID "TAMM41--IQSEC1^ENST00000273037.9" ; Parent "TAMM41--IQSEC1^TAMM41^ENSG00000144559.10" ; ccdsid "CCDS2607.1" ; exon_id "ENSE00001866827.1" ; exon_number 1 ; gene_id "TAMM41--IQSEC1^TAMM41^ENSG00000144559.10" ; gene_name TAMM41 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129741.4" ; havana_transcript "OTTHUMT00000251952.3" ; hgnc_id "HGNC:25187" ; level 2 ; orig_coord_info "chr3,11846502,11846636,-" ; protein_id "ENSP00000273037.5" ; tag basic CCDS ; transcript_id "TAMM41--IQSEC1^ENST00000273037.9" ; transcript_name "TAMM41-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAMM41--IQSEC1 HAVANA gene 31046 51981 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "TAMM41--IQSEC1^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "TAMM41--IQSEC1^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "TAMM41--IQSEC1^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAMM41--IQSEC1 HAVANA mRNA 31046 51981 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "TAMM41--IQSEC1^ENST00000273221.8" ; Parent "TAMM41--IQSEC1^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "TAMM41--IQSEC1^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "TAMM41--IQSEC1^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AL669831.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AL669831.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AL669831.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AL669831.1^ENST00000326270.13" ; Parent "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AL669831.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMCO4--CSE1L HAVANA gene 24248 46978 . + . FI_gene_label "CSE1L^ENSG00000124207.17" ; ID "TMCO4--CSE1L^CSE1L^ENSG00000124207.17" ; ccdsid "CCDS13412.1" ; exon_id "ENSE00003673128.1" ; exon_number 2 ; gene_id "TMCO4--CSE1L^CSE1L^ENSG00000124207.17" ; gene_name CSE1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000033046.4" ; havana_transcript "OTTHUMT00000080345.3" ; hgnc_id "HGNC:2431" ; level 2 ; orig_coord_info "chr20,49058464,49058548,+" ; protein_id "ENSP00000262982.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMCO4--CSE1L^ENST00000262982.3" ; transcript_name "CSE1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMCO4--CSE1L HAVANA mRNA 24248 46978 . + . FI_gene_label "CSE1L^ENSG00000124207.17" ; ID "TMCO4--CSE1L^ENST00000262982.3" ; Parent "TMCO4--CSE1L^CSE1L^ENSG00000124207.17" ; ccdsid "CCDS13412.1" ; exon_id "ENSE00003673128.1" ; exon_number 2 ; gene_id "TMCO4--CSE1L^CSE1L^ENSG00000124207.17" ; gene_name CSE1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000033046.4" ; havana_transcript "OTTHUMT00000080345.3" ; hgnc_id "HGNC:2431" ; level 2 ; orig_coord_info "chr20,49058464,49058548,+" ; protein_id "ENSP00000262982.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMCO4--CSE1L^ENST00000262982.3" ; transcript_name "CSE1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMCO4--CSE1L HAVANA gene 1030 21181 . + . FI_gene_label "TMCO4^ENSG00000162542.14" ; ID "TMCO4--CSE1L^TMCO4^ENSG00000162542.14" ; ccdsid "CCDS198.1" ; exon_id "ENSE00003672467.1" ; exon_number 4 ; gene_id "TMCO4--CSE1L^TMCO4^ENSG00000162542.14" ; gene_name TMCO4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002697.1" ; havana_transcript "OTTHUMT00000007658.1" ; hgnc_id "HGNC:27393" ; level 2 ; orig_coord_info "chr1,19780580,19780758,-" ; protein_id "ENSP00000294543.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TMCO4--CSE1L^ENST00000294543.11" ; transcript_name "TMCO4-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMCO4--CSE1L HAVANA mRNA 1030 21181 . + . FI_gene_label "TMCO4^ENSG00000162542.14" ; ID "TMCO4--CSE1L^ENST00000294543.11" ; Parent "TMCO4--CSE1L^TMCO4^ENSG00000162542.14" ; ccdsid "CCDS198.1" ; exon_id "ENSE00003672467.1" ; exon_number 4 ; gene_id "TMCO4--CSE1L^TMCO4^ENSG00000162542.14" ; gene_name TMCO4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002697.1" ; havana_transcript "OTTHUMT00000007658.1" ; hgnc_id "HGNC:27393" ; level 2 ; orig_coord_info "chr1,19780580,19780758,-" ; protein_id "ENSP00000294543.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TMCO4--CSE1L^ENST00000294543.11" ; transcript_name "TMCO4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRPS1--EIF3H HAVANA gene 3960 20612 . + . FI_gene_label "TRPS1^ENSG00000104447.13" ; ID "TRPS1--EIF3H^TRPS1^ENSG00000104447.13" ; ccdsid "CCDS83316.1" ; exon_id "ENSE00003549754.1" ; exon_number 2 ; gene_id "TRPS1--EIF3H^TRPS1^ENSG00000104447.13" ; gene_name TRPS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142829.6" ; havana_transcript "OTTHUMT00000286436.3" ; hgnc_id "HGNC:12340" ; level 2 ; orig_coord_info "chr8,115619132,115620058,-" ; protein_id "ENSP00000220888.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "TRPS1--EIF3H^ENST00000220888.9" ; transcript_name "TRPS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRPS1--EIF3H HAVANA mRNA 3960 20612 . + . FI_gene_label "TRPS1^ENSG00000104447.13" ; ID "TRPS1--EIF3H^ENST00000220888.9" ; Parent "TRPS1--EIF3H^TRPS1^ENSG00000104447.13" ; ccdsid "CCDS83316.1" ; exon_id "ENSE00003549754.1" ; exon_number 2 ; gene_id "TRPS1--EIF3H^TRPS1^ENSG00000104447.13" ; gene_name TRPS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142829.6" ; havana_transcript "OTTHUMT00000286436.3" ; hgnc_id "HGNC:12340" ; level 2 ; orig_coord_info "chr8,115619132,115620058,-" ; protein_id "ENSP00000220888.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "TRPS1--EIF3H^ENST00000220888.9" ; transcript_name "TRPS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRPS1--EIF3H HAVANA gene 28336 43842 . + . FI_gene_label "EIF3H^ENSG00000147677.11" ; ID "TRPS1--EIF3H^EIF3H^ENSG00000147677.11" ; exon_id "ENSE00002101437.1" ; exon_number 2 ; gene_id "TRPS1--EIF3H^EIF3H^ENSG00000147677.11" ; gene_name EIF3H ; gene_type protein_coding ; havana_gene "OTTHUMG00000164919.3" ; havana_transcript "OTTHUMT00000380913.1" ; hgnc_id "HGNC:3273" ; level 1 ; orig_coord_info "chr8,116755952,116755993,-" ; protein_id "ENSP00000276682.4" ; tag basic exp_conf ; transcript_id "TRPS1--EIF3H^ENST00000276682.8" ; transcript_name "EIF3H-201" ; transcript_support_level 2 ; transcript_type protein_coding
TRPS1--EIF3H HAVANA mRNA 28336 43842 . + . FI_gene_label "EIF3H^ENSG00000147677.11" ; ID "TRPS1--EIF3H^ENST00000276682.8" ; Parent "TRPS1--EIF3H^EIF3H^ENSG00000147677.11" ; exon_id "ENSE00002101437.1" ; exon_number 2 ; gene_id "TRPS1--EIF3H^EIF3H^ENSG00000147677.11" ; gene_name EIF3H ; gene_type protein_coding ; havana_gene "OTTHUMG00000164919.3" ; havana_transcript "OTTHUMT00000380913.1" ; hgnc_id "HGNC:3273" ; level 1 ; orig_coord_info "chr8,116755952,116755993,-" ; protein_id "ENSP00000276682.4" ; tag basic exp_conf ; transcript_id "TRPS1--EIF3H^ENST00000276682.8" ; transcript_name "EIF3H-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TYW1--CCT6P1 HAVANA gene 2339 20501 . + . FI_gene_label "TYW1^ENSG00000198874.13" ; ID "TYW1--CCT6P1^TYW1^ENSG00000198874.13" ; ccdsid "CCDS5538.1" ; exon_id "ENSE00001947681.2" ; exon_number 1 ; gene_id "TYW1--CCT6P1^TYW1^ENSG00000198874.13" ; gene_name TYW1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129723.5" ; havana_transcript "OTTHUMT00000251932.3" ; hgnc_id "HGNC:25598" ; level 2 ; orig_coord_info "chr7,66996979,66996982,+" ; protein_id "ENSP00000352645.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TYW1--CCT6P1^ENST00000359626.10" ; transcript_name "TYW1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TYW1--CCT6P1 HAVANA mRNA 2339 20501 . + . FI_gene_label "TYW1^ENSG00000198874.13" ; ID "TYW1--CCT6P1^ENST00000359626.10" ; Parent "TYW1--CCT6P1^TYW1^ENSG00000198874.13" ; ccdsid "CCDS5538.1" ; exon_id "ENSE00001947681.2" ; exon_number 1 ; gene_id "TYW1--CCT6P1^TYW1^ENSG00000198874.13" ; gene_name TYW1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129723.5" ; havana_transcript "OTTHUMT00000251932.3" ; hgnc_id "HGNC:25598" ; level 2 ; orig_coord_info "chr7,66996979,66996982,+" ; protein_id "ENSP00000352645.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TYW1--CCT6P1^ENST00000359626.10" ; transcript_name "TYW1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP50--ATP8B4 HAVANA gene 21045 66531 . + . FI_gene_label "ATP8B4^ENSG00000104043.15" ; ID "USP50--ATP8B4^ATP8B4^ENSG00000104043.15" ; ccdsid "CCDS32238.1" ; exon_id "ENSE00001409398.2" ; exon_number 2 ; gene_id "USP50--ATP8B4^ATP8B4^ENSG00000104043.15" ; gene_name ATP8B4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172368.5" ; havana_transcript "OTTHUMT00000530504.1" ; hgnc_id "HGNC:13536" ; level 2 ; orig_coord_info "chr15,50106939,50106966,-" ; protein_id "ENSP00000284509.6" ; tag alternative_5_UTR CAGE_supported_TSS inferred_transcript_model basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP50--ATP8B4^ENST00000284509.11" ; transcript_name "ATP8B4-201" ; transcript_support_level 5 ; transcript_type protein_coding
USP50--ATP8B4 HAVANA mRNA 21045 66531 . + . FI_gene_label "ATP8B4^ENSG00000104043.15" ; ID "USP50--ATP8B4^ENST00000284509.11" ; Parent "USP50--ATP8B4^ATP8B4^ENSG00000104043.15" ; ccdsid "CCDS32238.1" ; exon_id "ENSE00001409398.2" ; exon_number 2 ; gene_id "USP50--ATP8B4^ATP8B4^ENSG00000104043.15" ; gene_name ATP8B4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172368.5" ; havana_transcript "OTTHUMT00000530504.1" ; hgnc_id "HGNC:13536" ; level 2 ; orig_coord_info "chr15,50106939,50106966,-" ; protein_id "ENSP00000284509.6" ; tag alternative_5_UTR CAGE_supported_TSS inferred_transcript_model basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP50--ATP8B4^ENST00000284509.11" ; transcript_name "ATP8B4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
USP50--ATP8B4 HAVANA gene 5637 9649 . + . FI_gene_label "USP50^ENSG00000170236.16" ; ID "USP50--ATP8B4^USP50^ENSG00000170236.16" ; exon_id "ENSE00003556488.1" ; exon_number 1 ; gene_id "USP50--ATP8B4^USP50^ENSG00000170236.16" ; gene_name USP50 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167591.5" ; havana_transcript "OTTHUMT00000395273.2" ; hgnc_id "HGNC:20079" ; level 2 ; orig_coord_info "chr15,50538709,50538851,-" ; protein_id "ENSP00000434014.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "USP50--ATP8B4^ENST00000529349.2" ; transcript_name "USP50-201" ; transcript_support_level 3 ; transcript_type nonsense_mediated_decay
USP50--ATP8B4 HAVANA mRNA 5637 9649 . + . FI_gene_label "USP50^ENSG00000170236.16" ; ID "USP50--ATP8B4^ENST00000529349.2" ; Parent "USP50--ATP8B4^USP50^ENSG00000170236.16" ; exon_id "ENSE00003556488.1" ; exon_number 1 ; gene_id "USP50--ATP8B4^USP50^ENSG00000170236.16" ; gene_name USP50 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167591.5" ; havana_transcript "OTTHUMT00000395273.2" ; hgnc_id "HGNC:20079" ; level 2 ; orig_coord_info "chr15,50538709,50538851,-" ; protein_id "ENSP00000434014.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "USP50--ATP8B4^ENST00000529349.2" ; transcript_name "USP50-201" ; transcript_support_level 3 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
UTRN--PHACTR2 HAVANA gene 93719 111139 . + . FI_gene_label "PHACTR2^ENSG00000112419.14" ; ID "UTRN--PHACTR2^PHACTR2^ENSG00000112419.14" ; ccdsid "CCDS43512.1" ; exon_id "ENSE00001445077.2" ; exon_number 1 ; gene_id "UTRN--PHACTR2^PHACTR2^ENSG00000112419.14" ; gene_name PHACTR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015732.4" ; havana_transcript "OTTHUMT00000396907.1" ; hgnc_id "HGNC:20956" ; level 2 ; orig_coord_info "chr6,143608310,143608322,+" ; protein_id "ENSP00000305530.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "UTRN--PHACTR2^ENST00000305766.10" ; transcript_name "PHACTR2-201" ; transcript_support_level 2 ; transcript_type protein_coding
UTRN--PHACTR2 HAVANA mRNA 93719 111139 . + . FI_gene_label "PHACTR2^ENSG00000112419.14" ; ID "UTRN--PHACTR2^ENST00000305766.10" ; Parent "UTRN--PHACTR2^PHACTR2^ENSG00000112419.14" ; ccdsid "CCDS43512.1" ; exon_id "ENSE00001445077.2" ; exon_number 1 ; gene_id "UTRN--PHACTR2^PHACTR2^ENSG00000112419.14" ; gene_name PHACTR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015732.4" ; havana_transcript "OTTHUMT00000396907.1" ; hgnc_id "HGNC:20956" ; level 2 ; orig_coord_info "chr6,143608310,143608322,+" ; protein_id "ENSP00000305530.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "UTRN--PHACTR2^ENST00000305766.10" ; transcript_name "PHACTR2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
UTRN--PHACTR2 HAVANA gene 72296 80483 . + . FI_gene_label "UTRN^ENSG00000152818.18" ; ID "UTRN--PHACTR2^UTRN^ENSG00000152818.18" ; exon_id "ENSE00002458940.1" ; exon_number 1 ; gene_id "UTRN--PHACTR2^UTRN^ENSG00000152818.18" ; gene_name UTRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000015746.6" ; havana_transcript "OTTHUMT00000042557.2" ; hgnc_id "HGNC:12635" ; level 2 ; orig_coord_info "chr6,144789229,144789279,+" ; protein_id "ENSP00000356494.3" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "UTRN--PHACTR2^ENST00000367524.7" ; transcript_name "UTRN-201" ; transcript_support_level 3 ; transcript_type protein_coding
UTRN--PHACTR2 HAVANA mRNA 72296 80483 . + . FI_gene_label "UTRN^ENSG00000152818.18" ; ID "UTRN--PHACTR2^ENST00000367524.7" ; Parent "UTRN--PHACTR2^UTRN^ENSG00000152818.18" ; exon_id "ENSE00002458940.1" ; exon_number 1 ; gene_id "UTRN--PHACTR2^UTRN^ENSG00000152818.18" ; gene_name UTRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000015746.6" ; havana_transcript "OTTHUMT00000042557.2" ; hgnc_id "HGNC:12635" ; level 2 ; orig_coord_info "chr6,144789229,144789279,+" ; protein_id "ENSP00000356494.3" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "UTRN--PHACTR2^ENST00000367524.7" ; transcript_name "UTRN-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
VPS8--EPHB3 HAVANA gene 1001 61785 . + . FI_gene_label "VPS8^ENSG00000156931.16" ; ID "VPS8--EPHB3^VPS8^ENSG00000156931.16" ; exon_id "ENSE00001491382.1" ; exon_number 2 ; gene_id "VPS8--EPHB3^VPS8^ENSG00000156931.16" ; gene_name VPS8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156707.10" ; hgnc_id "HGNC:29122" ; level 2 ; orig_coord_info "chr3,184824633,184824785,+" ; protein_id "ENSP00000287546.4" ; tag basic appris_alternative_1 ; transcript_id "VPS8--EPHB3^ENST00000287546.8" ; transcript_name "VPS8-201" ; transcript_support_level 1 ; transcript_type protein_coding
VPS8--EPHB3 HAVANA mRNA 1001 61785 . + . FI_gene_label "VPS8^ENSG00000156931.16" ; ID "VPS8--EPHB3^ENST00000287546.8" ; Parent "VPS8--EPHB3^VPS8^ENSG00000156931.16" ; exon_id "ENSE00001491382.1" ; exon_number 2 ; gene_id "VPS8--EPHB3^VPS8^ENSG00000156931.16" ; gene_name VPS8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156707.10" ; hgnc_id "HGNC:29122" ; level 2 ; orig_coord_info "chr3,184824633,184824785,+" ; protein_id "ENSP00000287546.4" ; tag basic appris_alternative_1 ; transcript_id "VPS8--EPHB3^ENST00000287546.8" ; transcript_name "VPS8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS8--EPHB3 HAVANA gene 64786 75661 . + . FI_gene_label "EPHB3^ENSG00000182580.3" ; ID "VPS8--EPHB3^EPHB3^ENSG00000182580.3" ; ccdsid "CCDS3268.1" ; exon_id "ENSE00001317406.4" ; exon_number 1 ; gene_id "VPS8--EPHB3^EPHB3^ENSG00000182580.3" ; gene_name EPHB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156710.2" ; havana_transcript "OTTHUMT00000345413.2" ; hgnc_id "HGNC:3394" ; level 2 ; orig_coord_info "chr3,184562236,184562353,+" ; protein_id "ENSP00000332118.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VPS8--EPHB3^ENST00000330394.3" ; transcript_name "EPHB3-201" ; transcript_support_level 1 ; transcript_type protein_coding
VPS8--EPHB3 HAVANA mRNA 64786 75661 . + . FI_gene_label "EPHB3^ENSG00000182580.3" ; ID "VPS8--EPHB3^ENST00000330394.3" ; Parent "VPS8--EPHB3^EPHB3^ENSG00000182580.3" ; ccdsid "CCDS3268.1" ; exon_id "ENSE00001317406.4" ; exon_number 1 ; gene_id "VPS8--EPHB3^EPHB3^ENSG00000182580.3" ; gene_name EPHB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156710.2" ; havana_transcript "OTTHUMT00000345413.2" ; hgnc_id "HGNC:3394" ; level 2 ; orig_coord_info "chr3,184562236,184562353,+" ; protein_id "ENSP00000332118.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VPS8--EPHB3^ENST00000330394.3" ; transcript_name "EPHB3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
AC079781.4--ASNS HAVANA gene 1001 1219 . + . FI_gene_label "AC079781.4^ENSG00000284627.1" ; ID "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; exon_id "ENSE00003813582.1" ; exon_number 1 ; gene_id "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; gene_name "AC079781.4" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192224.1" ; havana_transcript "OTTHUMT00000492944.1" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,97928082,97928300,-" ; tag non_submitted_evidence pseudo_consens basic ; transcript_id "AC079781.4--ASNS^ENST00000641908.1" ; transcript_name "AC079781.4-201" ; transcript_type transcribed_unprocessed_pseudogene
AC079781.4--ASNS HAVANA RNA 1001 1219 . + . FI_gene_label "AC079781.4^ENSG00000284627.1" ; ID "AC079781.4--ASNS^ENST00000641908.1" ; Parent "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; exon_id "ENSE00003813582.1" ; exon_number 1 ; gene_id "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; gene_name "AC079781.4" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192224.1" ; havana_transcript "OTTHUMT00000492944.1" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,97928082,97928300,-" ; tag non_submitted_evidence pseudo_consens basic ; transcript_id "AC079781.4--ASNS^ENST00000641908.1" ; transcript_name "AC079781.4-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC092666.2--ACTR3B HAVANA gene 1001 1246 . + . FI_gene_label "AC092666.2^ENSG00000276538.1" ; ID "AC092666.2--ACTR3B^AC092666.2^ENSG00000276538.1" ; exon_id "ENSE00003721503.1" ; exon_number 1 ; gene_id "AC092666.2--ACTR3B^AC092666.2^ENSG00000276538.1" ; gene_name "AC092666.2" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187707.1" ; havana_transcript "OTTHUMT00000475471.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,150047609,150047854,-" ; tag basic ; transcript_id "AC092666.2--ACTR3B^ENST00000613287.1" ; transcript_name "AC092666.2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AC092666.2--ACTR3B HAVANA RNA 1001 1246 . + . FI_gene_label "AC092666.2^ENSG00000276538.1" ; ID "AC092666.2--ACTR3B^ENST00000613287.1" ; Parent "AC092666.2--ACTR3B^AC092666.2^ENSG00000276538.1" ; exon_id "ENSE00003721503.1" ; exon_number 1 ; gene_id "AC092666.2--ACTR3B^AC092666.2^ENSG00000276538.1" ; gene_name "AC092666.2" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187707.1" ; havana_transcript "OTTHUMT00000475471.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,150047609,150047854,-" ; tag basic ; transcript_id "AC092666.2--ACTR3B^ENST00000613287.1" ; transcript_name "AC092666.2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
AC211486.4--AC211476.4 HAVANA gene 4114 8988 . + . FI_gene_label "AC211476.4^ENSG00000277125.1" ; ID "AC211486.4--AC211476.4^AC211476.4^ENSG00000277125.1" ; exon_id "ENSE00001414173.3" ; exon_number 1 ; gene_id "AC211486.4--AC211476.4^AC211476.4^ENSG00000277125.1" ; gene_name "AC211476.4" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188241.2" ; havana_transcript "OTTHUMT00000476739.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73065529,73065670,+" ; tag basic ; transcript_id "AC211486.4--AC211476.4^ENST00000275546.4" ; transcript_name "AC211476.4-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AC211486.4--AC211476.4 HAVANA RNA 4114 8988 . + . FI_gene_label "AC211476.4^ENSG00000277125.1" ; ID "AC211486.4--AC211476.4^ENST00000275546.4" ; Parent "AC211486.4--AC211476.4^AC211476.4^ENSG00000277125.1" ; exon_id "ENSE00001414173.3" ; exon_number 1 ; gene_id "AC211486.4--AC211476.4^AC211476.4^ENSG00000277125.1" ; gene_name "AC211476.4" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188241.2" ; havana_transcript "OTTHUMT00000476739.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73065529,73065670,+" ; tag basic ; transcript_id "AC211486.4--AC211476.4^ENST00000275546.4" ; transcript_name "AC211476.4-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
AC211486.4--AC211476.4 HAVANA gene 1001 1113 . + . FI_gene_label "AC211486.4^ENSG00000275121.1" ; ID "AC211486.4--AC211476.4^AC211486.4^ENSG00000275121.1" ; exon_id "ENSE00002268898.3" ; exon_number 1 ; gene_id "AC211486.4--AC211476.4^AC211486.4^ENSG00000275121.1" ; gene_name "AC211486.4" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000182945.1" ; havana_transcript "OTTHUMT00000464410.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr7,75237293,75237405,-" ; tag basic ; transcript_id "AC211486.4--AC211476.4^ENST00000621495.1" ; transcript_name "AC211486.4-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AC211486.4--AC211476.4 HAVANA RNA 1001 1113 . + . FI_gene_label "AC211486.4^ENSG00000275121.1" ; ID "AC211486.4--AC211476.4^ENST00000621495.1" ; Parent "AC211486.4--AC211476.4^AC211486.4^ENSG00000275121.1" ; exon_id "ENSE00002268898.3" ; exon_number 1 ; gene_id "AC211486.4--AC211476.4^AC211486.4^ENSG00000275121.1" ; gene_name "AC211486.4" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000182945.1" ; havana_transcript "OTTHUMT00000464410.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr7,75237293,75237405,-" ; tag basic ; transcript_id "AC211486.4--AC211476.4^ENST00000621495.1" ; transcript_name "AC211486.4-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AP1M1--OR7A2P HAVANA gene 28692 29621 . + . FI_gene_label "OR7A2P^ENSG00000172148.3" ; ID "AP1M1--OR7A2P^OR7A2P^ENSG00000172148.3" ; exon_id "ENSE00001137825.2" ; exon_number 1 ; gene_id "AP1M1--OR7A2P^OR7A2P^ENSG00000172148.3" ; gene_name OR7A2P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000183414.2" ; havana_transcript "OTTHUMT00000466522.2" ; hgnc_id "HGNC:8370" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr19,14863786,14864715,-" ; tag pseudo_consens basic ; transcript_id "AP1M1--OR7A2P^ENST00000304105.2" ; transcript_name "OR7A2P-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AP1M1--OR7A2P HAVANA RNA 28692 29621 . + . FI_gene_label "OR7A2P^ENSG00000172148.3" ; ID "AP1M1--OR7A2P^ENST00000304105.2" ; Parent "AP1M1--OR7A2P^OR7A2P^ENSG00000172148.3" ; exon_id "ENSE00001137825.2" ; exon_number 1 ; gene_id "AP1M1--OR7A2P^OR7A2P^ENSG00000172148.3" ; gene_name OR7A2P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000183414.2" ; havana_transcript "OTTHUMT00000466522.2" ; hgnc_id "HGNC:8370" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr19,14863786,14864715,-" ; tag pseudo_consens basic ; transcript_id "AP1M1--OR7A2P^ENST00000304105.2" ; transcript_name "OR7A2P-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AP1M1--OR7A8P HAVANA gene 27475 28387 . + . FI_gene_label "OR7A8P^ENSG00000269552.1" ; ID "AP1M1--OR7A8P^OR7A8P^ENSG00000269552.1" ; exon_id "ENSE00003169853.1" ; exon_number 1 ; gene_id "AP1M1--OR7A8P^OR7A8P^ENSG00000269552.1" ; gene_name OR7A8P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000183413.1" ; havana_transcript "OTTHUMT00000466521.1" ; hgnc_id "HGNC:8371" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr19,14852032,14852944,-" ; tag basic ; transcript_id "AP1M1--OR7A8P^ENST00000595427.1" ; transcript_name "OR7A8P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AP1M1--OR7A8P HAVANA RNA 27475 28387 . + . FI_gene_label "OR7A8P^ENSG00000269552.1" ; ID "AP1M1--OR7A8P^ENST00000595427.1" ; Parent "AP1M1--OR7A8P^OR7A8P^ENSG00000269552.1" ; exon_id "ENSE00003169853.1" ; exon_number 1 ; gene_id "AP1M1--OR7A8P^OR7A8P^ENSG00000269552.1" ; gene_name OR7A8P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000183413.1" ; havana_transcript "OTTHUMT00000466521.1" ; hgnc_id "HGNC:8371" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr19,14852032,14852944,-" ; tag basic ; transcript_id "AP1M1--OR7A8P^ENST00000595427.1" ; transcript_name "OR7A8P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
BMS1P7--AGAP13P HAVANA gene 10576 13938 . + . FI_gene_label "AGAP13P^ENSG00000243289.1" ; ID "BMS1P7--AGAP13P^AGAP13P^ENSG00000243289.1" ; exon_id "ENSE00002475142.1" ; exon_number 1 ; gene_id "BMS1P7--AGAP13P^AGAP13P^ENSG00000243289.1" ; gene_name AGAP13P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000018095.2" ; havana_transcript "OTTHUMT00000047819.2" ; hgnc_id "HGNC:23499" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr10,46816516,46816738,+" ; tag basic ; transcript_id "BMS1P7--AGAP13P^ENST00000417888.1" ; transcript_name "AGAP13P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
BMS1P7--AGAP13P HAVANA RNA 10576 13938 . + . FI_gene_label "AGAP13P^ENSG00000243289.1" ; ID "BMS1P7--AGAP13P^ENST00000417888.1" ; Parent "BMS1P7--AGAP13P^AGAP13P^ENSG00000243289.1" ; exon_id "ENSE00002475142.1" ; exon_number 1 ; gene_id "BMS1P7--AGAP13P^AGAP13P^ENSG00000243289.1" ; gene_name AGAP13P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000018095.2" ; havana_transcript "OTTHUMT00000047819.2" ; hgnc_id "HGNC:23499" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr10,46816516,46816738,+" ; tag basic ; transcript_id "BMS1P7--AGAP13P^ENST00000417888.1" ; transcript_name "AGAP13P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
BMS1P7--AGAP13P HAVANA gene 1001 7575 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "BMS1P7--AGAP13P^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "BMS1P7--AGAP13P^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "BMS1P7--AGAP13P^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
BMS1P7--AGAP13P HAVANA RNA 1001 7575 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "BMS1P7--AGAP13P^ENST00000602440.2" ; Parent "BMS1P7--AGAP13P^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "BMS1P7--AGAP13P^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "BMS1P7--AGAP13P^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
CCDC75P1--GXYLT2 HAVANA gene 1001 1791 . + . FI_gene_label "CCDC75P1^ENSG00000182921.9" ; ID "CCDC75P1--GXYLT2^CCDC75P1^ENSG00000182921.9" ; exon_id "ENSE00001944821.1" ; exon_number 1 ; gene_id "CCDC75P1--GXYLT2^CCDC75P1^ENSG00000182921.9" ; gene_name CCDC75P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000158866.1" ; havana_transcript "OTTHUMT00000352472.1" ; hgnc_id "HGNC:42659" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr3,73182501,73183291,-" ; tag pseudo_consens basic ; transcript_id "CCDC75P1--GXYLT2^ENST00000469247.1" ; transcript_name "CCDC75P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
CCDC75P1--GXYLT2 HAVANA RNA 1001 1791 . + . FI_gene_label "CCDC75P1^ENSG00000182921.9" ; ID "CCDC75P1--GXYLT2^ENST00000469247.1" ; Parent "CCDC75P1--GXYLT2^CCDC75P1^ENSG00000182921.9" ; exon_id "ENSE00001944821.1" ; exon_number 1 ; gene_id "CCDC75P1--GXYLT2^CCDC75P1^ENSG00000182921.9" ; gene_name CCDC75P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000158866.1" ; havana_transcript "OTTHUMT00000352472.1" ; hgnc_id "HGNC:42659" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr3,73182501,73183291,-" ; tag pseudo_consens basic ; transcript_id "CCDC75P1--GXYLT2^ENST00000469247.1" ; transcript_name "CCDC75P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
DOCK9--JPT1P1 HAVANA gene 66138 66601 . + . FI_gene_label "JPT1P1^ENSG00000213148.3" ; ID "DOCK9--JPT1P1^JPT1P1^ENSG00000213148.3" ; exon_id "ENSE00001796715.1" ; exon_number 1 ; gene_id "DOCK9--JPT1P1^JPT1P1^ENSG00000213148.3" ; gene_name JPT1P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000154105.1" ; havana_transcript "OTTHUMT00000333935.1" ; hgnc_id "HGNC:54768" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,173431349,173431812,-" ; tag pseudo_consens basic ; transcript_id "DOCK9--JPT1P1^ENST00000456671.1" ; transcript_name "JPT1P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
DOCK9--JPT1P1 HAVANA RNA 66138 66601 . + . FI_gene_label "JPT1P1^ENSG00000213148.3" ; ID "DOCK9--JPT1P1^ENST00000456671.1" ; Parent "DOCK9--JPT1P1^JPT1P1^ENSG00000213148.3" ; exon_id "ENSE00001796715.1" ; exon_number 1 ; gene_id "DOCK9--JPT1P1^JPT1P1^ENSG00000213148.3" ; gene_name JPT1P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000154105.1" ; havana_transcript "OTTHUMT00000333935.1" ; hgnc_id "HGNC:54768" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,173431349,173431812,-" ; tag pseudo_consens basic ; transcript_id "DOCK9--JPT1P1^ENST00000456671.1" ; transcript_name "JPT1P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
DOCK9--PPIAP66 HAVANA gene 66138 66635 . + . FI_gene_label "PPIAP66^ENSG00000226131.1" ; ID "DOCK9--PPIAP66^PPIAP66^ENSG00000226131.1" ; exon_id "ENSE00001642089.1" ; exon_number 1 ; gene_id "DOCK9--PPIAP66^PPIAP66^ENSG00000226131.1" ; gene_name PPIAP66 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000154128.1" ; havana_transcript "OTTHUMT00000333981.1" ; hgnc_id "HGNC:53690" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,173485865,173486362,-" ; tag pseudo_consens basic ; transcript_id "DOCK9--PPIAP66^ENST00000440938.1" ; transcript_name "PPIAP66-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
DOCK9--PPIAP66 HAVANA RNA 66138 66635 . + . FI_gene_label "PPIAP66^ENSG00000226131.1" ; ID "DOCK9--PPIAP66^ENST00000440938.1" ; Parent "DOCK9--PPIAP66^PPIAP66^ENSG00000226131.1" ; exon_id "ENSE00001642089.1" ; exon_number 1 ; gene_id "DOCK9--PPIAP66^PPIAP66^ENSG00000226131.1" ; gene_name PPIAP66 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000154128.1" ; havana_transcript "OTTHUMT00000333981.1" ; hgnc_id "HGNC:53690" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,173485865,173486362,-" ; tag pseudo_consens basic ; transcript_id "DOCK9--PPIAP66^ENST00000440938.1" ; transcript_name "PPIAP66-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
EFL1--GOLGA6L11P HAVANA gene 28063 33687 . + . FI_gene_label "GOLGA6L11P^ENSG00000223698.3" ; ID "EFL1--GOLGA6L11P^GOLGA6L11P^ENSG00000223698.3" ; exon_id "ENSE00001742768.1" ; exon_number 1 ; gene_id "EFL1--GOLGA6L11P^GOLGA6L11P^ENSG00000223698.3" ; gene_name GOLGA6L11P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000045042.2" ; havana_transcript "OTTHUMT00000104689.2" ; hgnc_id "HGNC:23958" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chrY,24168187,24168270,+" ; tag pseudo_consens basic ; transcript_id "EFL1--GOLGA6L11P^ENST00000417252.2" ; transcript_name "GOLGA6L11P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
EFL1--GOLGA6L11P HAVANA RNA 28063 33687 . + . FI_gene_label "GOLGA6L11P^ENSG00000223698.3" ; ID "EFL1--GOLGA6L11P^ENST00000417252.2" ; Parent "EFL1--GOLGA6L11P^GOLGA6L11P^ENSG00000223698.3" ; exon_id "ENSE00001742768.1" ; exon_number 1 ; gene_id "EFL1--GOLGA6L11P^GOLGA6L11P^ENSG00000223698.3" ; gene_name GOLGA6L11P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000045042.2" ; havana_transcript "OTTHUMT00000104689.2" ; hgnc_id "HGNC:23958" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chrY,24168187,24168270,+" ; tag pseudo_consens basic ; transcript_id "EFL1--GOLGA6L11P^ENST00000417252.2" ; transcript_name "GOLGA6L11P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
IGSF3--AC027612.3 HAVANA gene 23062 25821 . + . FI_gene_label "AC027612.3^ENSG00000286698.1" ; ID "IGSF3--AC027612.3^AC027612.3^ENSG00000286698.1" ; exon_id "ENSE00003856346.1" ; exon_number 1 ; gene_id "IGSF3--AC027612.3^AC027612.3^ENSG00000286698.1" ; gene_name "AC027612.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195565.1" ; havana_transcript "OTTHUMT00000527560.1" ; level 2 ; orig_coord_info "chr2,91767614,91767701,-" ; tag basic TAGENE ; transcript_id "IGSF3--AC027612.3^ENST00000655443.1" ; transcript_name "AC027612.3-201" ; transcript_type lncRNA
IGSF3--AC027612.3 HAVANA RNA 23062 25821 . + . FI_gene_label "AC027612.3^ENSG00000286698.1" ; ID "IGSF3--AC027612.3^ENST00000655443.1" ; Parent "IGSF3--AC027612.3^AC027612.3^ENSG00000286698.1" ; exon_id "ENSE00003856346.1" ; exon_number 1 ; gene_id "IGSF3--AC027612.3^AC027612.3^ENSG00000286698.1" ; gene_name "AC027612.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195565.1" ; havana_transcript "OTTHUMT00000527560.1" ; level 2 ; orig_coord_info "chr2,91767614,91767701,-" ; tag basic TAGENE ; transcript_id "IGSF3--AC027612.3^ENST00000655443.1" ; transcript_name "AC027612.3-201" ; transcript_type lncRNA
L1 and L2 created:
LRP5--AP002992.1 HAVANA gene 34263 36851 . + . FI_gene_label "AP002992.1^ENSG00000255236.3" ; ID "LRP5--AP002992.1^AP002992.1^ENSG00000255236.3" ; exon_id "ENSE00002164717.1" ; exon_number 1 ; gene_id "LRP5--AP002992.1^AP002992.1^ENSG00000255236.3" ; gene_name "AP002992.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000167388.3" ; havana_transcript "OTTHUMT00000394457.2" ; level 1 ; orig_coord_info "chr11,68122053,68122203,+" ; tag exp_conf ; transcript_id "LRP5--AP002992.1^ENST00000527519.2" ; transcript_name "AP002992.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
LRP5--AP002992.1 HAVANA RNA 34263 36851 . + . FI_gene_label "AP002992.1^ENSG00000255236.3" ; ID "LRP5--AP002992.1^ENST00000527519.2" ; Parent "LRP5--AP002992.1^AP002992.1^ENSG00000255236.3" ; exon_id "ENSE00002164717.1" ; exon_number 1 ; gene_id "LRP5--AP002992.1^AP002992.1^ENSG00000255236.3" ; gene_name "AP002992.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000167388.3" ; havana_transcript "OTTHUMT00000394457.2" ; level 1 ; orig_coord_info "chr11,68122053,68122203,+" ; tag exp_conf ; transcript_id "LRP5--AP002992.1^ENST00000527519.2" ; transcript_name "AP002992.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
MEGF8--CYP2B7P HAVANA gene 35440 43543 . + . FI_gene_label "CYP2B7P^ENSG00000256612.7" ; ID "MEGF8--CYP2B7P^CYP2B7P^ENSG00000256612.7" ; exon_id "ENSE00002320869.3" ; exon_number 1 ; gene_id "MEGF8--CYP2B7P^CYP2B7P^ENSG00000256612.7" ; gene_name CYP2B7P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000182706.6" ; havana_transcript "OTTHUMT00000465179.3" ; hgnc_id "HGNC:2616" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr19,40924273,40924443,+" ; tag basic ; transcript_id "MEGF8--CYP2B7P^ENST00000541697.7" ; transcript_name "CYP2B7P-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
MEGF8--CYP2B7P HAVANA RNA 35440 43543 . + . FI_gene_label "CYP2B7P^ENSG00000256612.7" ; ID "MEGF8--CYP2B7P^ENST00000541697.7" ; Parent "MEGF8--CYP2B7P^CYP2B7P^ENSG00000256612.7" ; exon_id "ENSE00002320869.3" ; exon_number 1 ; gene_id "MEGF8--CYP2B7P^CYP2B7P^ENSG00000256612.7" ; gene_name CYP2B7P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000182706.6" ; havana_transcript "OTTHUMT00000465179.3" ; hgnc_id "HGNC:2616" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr19,40924273,40924443,+" ; tag basic ; transcript_id "MEGF8--CYP2B7P^ENST00000541697.7" ; transcript_name "CYP2B7P-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
NPM1--MT-RNR2 ENSEMBL gene 18634 20192 . + . FI_gene_label "MT-RNR2^ENSG00000210082.2" ; ID "NPM1--MT-RNR2^MT-RNR2^ENSG00000210082.2" ; exon_id "ENSE00001544497.2" ; exon_number 1 ; gene_id "NPM1--MT-RNR2^MT-RNR2^ENSG00000210082.2" ; gene_name "MT-RNR2" ; gene_type Mt_rRNA ; hgnc_id "HGNC:7471" ; level 3 ; orig_coord_info "chrM,1671,3229,+" ; tag basic ; transcript_id "NPM1--MT-RNR2^ENST00000387347.2" ; transcript_name "MT-RNR2-201" ; transcript_support_level NA ; transcript_type Mt_rRNA
NPM1--MT-RNR2 ENSEMBL RNA 18634 20192 . + . FI_gene_label "MT-RNR2^ENSG00000210082.2" ; ID "NPM1--MT-RNR2^ENST00000387347.2" ; Parent "NPM1--MT-RNR2^MT-RNR2^ENSG00000210082.2" ; exon_id "ENSE00001544497.2" ; exon_number 1 ; gene_id "NPM1--MT-RNR2^MT-RNR2^ENSG00000210082.2" ; gene_name "MT-RNR2" ; gene_type Mt_rRNA ; hgnc_id "HGNC:7471" ; level 3 ; orig_coord_info "chrM,1671,3229,+" ; tag basic ; transcript_id "NPM1--MT-RNR2^ENST00000387347.2" ; transcript_name "MT-RNR2-201" ; transcript_support_level NA ; transcript_type Mt_rRNA
L1 and L2 created:
PPL--AC023830.1 HAVANA gene 26449 28991 . + . FI_gene_label "AC023830.1^ENSG00000261442.1" ; ID "PPL--AC023830.1^AC023830.1^ENSG00000261442.1" ; exon_id "ENSE00002601599.1" ; exon_number 1 ; gene_id "PPL--AC023830.1^AC023830.1^ENSG00000261442.1" ; gene_name "AC023830.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177157.1" ; havana_transcript "OTTHUMT00000435677.1" ; level 2 ; orig_coord_info "chr16,4639784,4640623,-" ; tag basic ; transcript_id "PPL--AC023830.1^ENST00000569678.1" ; transcript_name "AC023830.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
PPL--AC023830.1 HAVANA RNA 26449 28991 . + . FI_gene_label "AC023830.1^ENSG00000261442.1" ; ID "PPL--AC023830.1^ENST00000569678.1" ; Parent "PPL--AC023830.1^AC023830.1^ENSG00000261442.1" ; exon_id "ENSE00002601599.1" ; exon_number 1 ; gene_id "PPL--AC023830.1^AC023830.1^ENSG00000261442.1" ; gene_name "AC023830.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177157.1" ; havana_transcript "OTTHUMT00000435677.1" ; level 2 ; orig_coord_info "chr16,4639784,4640623,-" ; tag basic ; transcript_id "PPL--AC023830.1^ENST00000569678.1" ; transcript_name "AC023830.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
PTPN20--BMS1P7 HAVANA gene 23485 30059 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "PTPN20--BMS1P7^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
PTPN20--BMS1P7 HAVANA RNA 23485 30059 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "PTPN20--BMS1P7^ENST00000602440.2" ; Parent "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "PTPN20--BMS1P7^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
RB1--AP005901.1 HAVANA gene 36463 45230 . + . FI_gene_label "AP005901.1^ENSG00000215512.9" ; ID "RB1--AP005901.1^AP005901.1^ENSG00000215512.9" ; exon_id "ENSE00002215914.1" ; exon_number 1 ; gene_id "RB1--AP005901.1^AP005901.1^ENSG00000215512.9" ; gene_name "AP005901.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000163472.1" ; havana_transcript "OTTHUMT00000373635.1" ; level 2 ; orig_coord_info "chr18,15330066,15330263,-" ; transcript_id "RB1--AP005901.1^ENST00000455308.6" ; transcript_name "AP005901.1-202" ; transcript_support_level 5 ; transcript_type processed_transcript
RB1--AP005901.1 HAVANA RNA 36463 45230 . + . FI_gene_label "AP005901.1^ENSG00000215512.9" ; ID "RB1--AP005901.1^ENST00000455308.6" ; Parent "RB1--AP005901.1^AP005901.1^ENSG00000215512.9" ; exon_id "ENSE00002215914.1" ; exon_number 1 ; gene_id "RB1--AP005901.1^AP005901.1^ENSG00000215512.9" ; gene_name "AP005901.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000163472.1" ; havana_transcript "OTTHUMT00000373635.1" ; level 2 ; orig_coord_info "chr18,15330066,15330263,-" ; transcript_id "RB1--AP005901.1^ENST00000455308.6" ; transcript_name "AP005901.1-202" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
RBM6--AC108199.1 HAVANA gene 33840 35172 . + . FI_gene_label "AC108199.1^ENSG00000249219.1" ; ID "RBM6--AC108199.1^AC108199.1^ENSG00000249219.1" ; exon_id "ENSE00002036515.1" ; exon_number 1 ; gene_id "RBM6--AC108199.1^AC108199.1^ENSG00000249219.1" ; gene_name "AC108199.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000160246.1" ; havana_transcript "OTTHUMT00000359870.1" ; level 1 ; orig_coord_info "chr4,9922814,9922950,+" ; tag basic exp_conf ; transcript_id "RBM6--AC108199.1^ENST00000504249.1" ; transcript_name "AC108199.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
RBM6--AC108199.1 HAVANA RNA 33840 35172 . + . FI_gene_label "AC108199.1^ENSG00000249219.1" ; ID "RBM6--AC108199.1^ENST00000504249.1" ; Parent "RBM6--AC108199.1^AC108199.1^ENSG00000249219.1" ; exon_id "ENSE00002036515.1" ; exon_number 1 ; gene_id "RBM6--AC108199.1^AC108199.1^ENSG00000249219.1" ; gene_name "AC108199.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000160246.1" ; havana_transcript "OTTHUMT00000359870.1" ; level 1 ; orig_coord_info "chr4,9922814,9922950,+" ; tag basic exp_conf ; transcript_id "RBM6--AC108199.1^ENST00000504249.1" ; transcript_name "AC108199.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
RNU2-64P--GXYLT2 ENSEMBL gene 1001 1191 . + . FI_gene_label "RNU2-64P^ENSG00000223247.1" ; ID "RNU2-64P--GXYLT2^RNU2-64P^ENSG00000223247.1" ; exon_id "ENSE00001807325.1" ; exon_number 1 ; gene_id "RNU2-64P--GXYLT2^RNU2-64P^ENSG00000223247.1" ; gene_name "RNU2-64P" ; gene_type snRNA ; hgnc_id "HGNC:48557" ; level 3 ; orig_coord_info "chr3,73110992,73111182,+" ; tag basic ; transcript_id "RNU2-64P--GXYLT2^ENST00000411315.1" ; transcript_name "RNU2-64P-201" ; transcript_support_level NA ; transcript_type snRNA
RNU2-64P--GXYLT2 ENSEMBL RNA 1001 1191 . + . FI_gene_label "RNU2-64P^ENSG00000223247.1" ; ID "RNU2-64P--GXYLT2^ENST00000411315.1" ; Parent "RNU2-64P--GXYLT2^RNU2-64P^ENSG00000223247.1" ; exon_id "ENSE00001807325.1" ; exon_number 1 ; gene_id "RNU2-64P--GXYLT2^RNU2-64P^ENSG00000223247.1" ; gene_name "RNU2-64P" ; gene_type snRNA ; hgnc_id "HGNC:48557" ; level 3 ; orig_coord_info "chr3,73110992,73111182,+" ; tag basic ; transcript_id "RNU2-64P--GXYLT2^ENST00000411315.1" ; transcript_name "RNU2-64P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
SEC22B2P--PDE4DIP HAVANA gene 1001 4573 . + . FI_gene_label "SEC22B2P^ENSG00000274423.1" ; ID "SEC22B2P--PDE4DIP^SEC22B2P^ENSG00000274423.1" ; exon_id "ENSE00003738038.1" ; exon_number 1 ; gene_id "SEC22B2P--PDE4DIP^SEC22B2P^ENSG00000274423.1" ; gene_name SEC22B2P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000013745.8" ; havana_transcript "OTTHUMT00000476568.2" ; hgnc_id "HGNC:53890" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,149345661,149345770,+" ; tag basic ; transcript_id "SEC22B2P--PDE4DIP^ENST00000618702.1" ; transcript_name "SEC22B2P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
SEC22B2P--PDE4DIP HAVANA RNA 1001 4573 . + . FI_gene_label "SEC22B2P^ENSG00000274423.1" ; ID "SEC22B2P--PDE4DIP^ENST00000618702.1" ; Parent "SEC22B2P--PDE4DIP^SEC22B2P^ENSG00000274423.1" ; exon_id "ENSE00003738038.1" ; exon_number 1 ; gene_id "SEC22B2P--PDE4DIP^SEC22B2P^ENSG00000274423.1" ; gene_name SEC22B2P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000013745.8" ; havana_transcript "OTTHUMT00000476568.2" ; hgnc_id "HGNC:53890" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,149345661,149345770,+" ; tag basic ; transcript_id "SEC22B2P--PDE4DIP^ENST00000618702.1" ; transcript_name "SEC22B2P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
STAG3L4--TYW1 HAVANA gene 2266 4501 . + . FI_gene_label "STAG3L4^ENSG00000106610.15" ; ID "STAG3L4--TYW1^STAG3L4^ENSG00000106610.15" ; exon_id "ENSE00002677705.1" ; exon_number 1 ; gene_id "STAG3L4--TYW1^STAG3L4^ENSG00000106610.15" ; gene_name STAG3L4 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000156920.4" ; havana_transcript "OTTHUMT00000346612.1" ; hgnc_id "HGNC:33887" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,67305987,67306083,+" ; tag basic ; transcript_id "STAG3L4--TYW1^ENST00000352103.6" ; transcript_name "STAG3L4-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
STAG3L4--TYW1 HAVANA RNA 2266 4501 . + . FI_gene_label "STAG3L4^ENSG00000106610.15" ; ID "STAG3L4--TYW1^ENST00000352103.6" ; Parent "STAG3L4--TYW1^STAG3L4^ENSG00000106610.15" ; exon_id "ENSE00002677705.1" ; exon_number 1 ; gene_id "STAG3L4--TYW1^STAG3L4^ENSG00000106610.15" ; gene_name STAG3L4 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000156920.4" ; havana_transcript "OTTHUMT00000346612.1" ; hgnc_id "HGNC:33887" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,67305987,67306083,+" ; tag basic ; transcript_id "STAG3L4--TYW1^ENST00000352103.6" ; transcript_name "STAG3L4-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
TLK2--AL669831.1 HAVANA gene 41389 47379 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "TLK2--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
TLK2--AL669831.1 HAVANA RNA 41389 47379 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "TLK2--AL669831.1^ENST00000428504.2" ; Parent "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "TLK2--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TYW1--CCT6P1 HAVANA gene 23507 34052 . + . FI_gene_label "CCT6P1^ENSG00000228409.6" ; ID "TYW1--CCT6P1^CCT6P1^ENSG00000228409.6" ; exon_id "ENSE00001650307.1" ; exon_number 1 ; gene_id "TYW1--CCT6P1^CCT6P1^ENSG00000228409.6" ; gene_name CCT6P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000156733.2" ; havana_transcript "OTTHUMT00000345505.2" ; hgnc_id "HGNC:33094" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,65751142,65751278,+" ; tag basic ; transcript_id "TYW1--CCT6P1^ENST00000434500.6" ; transcript_name "CCT6P1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
TYW1--CCT6P1 HAVANA RNA 23507 34052 . + . FI_gene_label "CCT6P1^ENSG00000228409.6" ; ID "TYW1--CCT6P1^ENST00000434500.6" ; Parent "TYW1--CCT6P1^CCT6P1^ENSG00000228409.6" ; exon_id "ENSE00001650307.1" ; exon_number 1 ; gene_id "TYW1--CCT6P1^CCT6P1^ENSG00000228409.6" ; gene_name CCT6P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000156733.2" ; havana_transcript "OTTHUMT00000345505.2" ; hgnc_id "HGNC:33094" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,65751142,65751278,+" ; tag basic ; transcript_id "TYW1--CCT6P1^ENST00000434500.6" ; transcript_name "CCT6P1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
1332 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 1 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
2634 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 85 wrong level1 location cases
------------------------------ done in 1 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 2 second) ------
GFF3 file parsed