Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/Homo_sapiens.GRCh38.102.gtf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/177e1f8312462e0d964a1f1de0a893/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/1d240687c0fcc10395485d5ad93b23/kallisto
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/177e1f8312462e0d964a1f1de0a893/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/4f6c6cef8830346eea668d054c2d05/659_8h-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/4f6c6cef8830346eea668d054c2d05/659_8h-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)


[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 194,360
[index] number of k-mers: 112,035,259
[quant] running in paired-end mode
[quant] will process pair 1: 659_8h-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz
                             659_8h-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz
[quant] finding pseudoalignments for the reads ... done
[quant] processed 37,008 reads, 1,695 reads pseudoaligned
[quant] estimated average fragment length: 88.71
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 453 rounds