File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/c3a58c865214be97bd7158a6c9be2e/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:18:34Z thread 427 Sample sheet being processed by common lib? Yes
2026-06-08T06:18:34Z thread 427 SampleSheet Settings: 
2026-06-08T06:18:34Z thread 427   FastqCompressionFormat = gzip
2026-06-08T06:18:34Z thread 427   NoLaneSplitting = FALSE
2026-06-08T06:18:34Z thread 427   OverrideCycles = Y151;I10;I10;Y151
2026-06-08T06:18:34Z thread 427   SoftwareVersion = 4.3.6
2026-06-08T06:18:34Z thread 427 
2026-06-08T06:18:34Z thread 427 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:18:34Z thread 427 shared-thread-linux-native-asio output is disabled
2026-06-08T06:18:34Z thread 427 bcl-convert Version 4.4.6
2026-06-08T06:18:34Z thread 427 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:18:34Z thread 427 Command Line: --tiles s_7 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:18:34Z thread 427 Conversion Begins.
2026-06-08T06:18:34Z thread 427 Input BCL Information:
2026-06-08T06:18:34Z thread 427     Read Structure: 2026-06-08T06:18:34Z thread 427 Y1512026-06-08T06:18:34Z thread 427 ;2026-06-08T06:18:34Z thread 427 I102026-06-08T06:18:34Z thread 427 ;2026-06-08T06:18:34Z thread 427 I102026-06-08T06:18:34Z thread 427 ;2026-06-08T06:18:34Z thread 427 Y1512026-06-08T06:18:34Z thread 427 
2026-06-08T06:18:34Z thread 427     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:18:34Z thread 427     BCL file format: cbcl
2026-06-08T06:18:34Z thread 427     Positions file format: slocs
2026-06-08T06:18:34Z thread 427     Filter file format: filter
2026-06-08T06:18:34Z thread 427 Conversion Information:
2026-06-08T06:18:34Z thread 427     Tile filtering: converting 784/6272 tiles
2026-06-08T06:18:34Z thread 427     Sample Count for Lane 1: 48
2026-06-08T06:18:34Z thread 427     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:34Z thread 427     Sample Count for Lane 2: 48
2026-06-08T06:18:34Z thread 427     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:34Z thread 427     Sample Count for Lane 3: 48
2026-06-08T06:18:34Z thread 427     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:34Z thread 427     Sample Count for Lane 4: 48
2026-06-08T06:18:34Z thread 427     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:34Z thread 427     Sample Count for Lane 5: 48
2026-06-08T06:18:34Z thread 427     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:34Z thread 427     Sample Count for Lane 6: 48
2026-06-08T06:18:34Z thread 427     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:34Z thread 427     Sample Count for Lane 7: 48
2026-06-08T06:18:34Z thread 427     Sample Count for Lane 8: 48
2026-06-08T06:18:34Z thread 427     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:34Z thread 427     Expected number of sample FASTQ files to be created: 96
2026-06-08T06:18:34Z thread 427 # CPU hw threads available: 64
2026-06-08T06:18:34Z thread 427 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:18:34Z thread 427 SW compressors: 64
2026-06-08T06:18:34Z thread 427 SW decompressors: 32
2026-06-08T06:18:34Z thread 427 SW FASTQ compression level: 1
2026-06-08T06:48:48Z thread 427 Lane 7 Post-run Information:
2026-06-08T06:48:48Z thread 427     Total clusters: 3994328926
2026-06-08T06:48:48Z thread 427     Total Genomic Reads: 7988657852
2026-06-08T06:48:48Z thread 427     Total Genomic Input Gigabases 1206.29
2026-06-08T06:48:48Z thread 427     Minimum reads for a sample: 96390
2026-06-08T06:48:48Z thread 427     Maximum reads for a sample: 455610116
2026-06-08T06:48:48Z thread 427     Average reads per sample: 155362636.17
2026-06-08T06:48:48Z thread 427     Undetermined reads: 531251316
2026-06-08T06:48:49Z thread 427 Conversion Complete.