[W::hts_idx_load3] The index file is older than the data file: 659_bIB-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	376190104
Known Splicing Events:	372373296
Partial Novel Splicing Events:	1539584
Novel Splicing Events:	2154749
Filtered Splicing Events:	122475

Total splicing  Junctions:	689409
Known Splicing Junctions:	291126
Partial Novel Splicing Junctions:	191847
Novel Splicing Junctions:	206436

===================================================================
Create BED file ...
Create Interact file ...