Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/d18446c911f90809469f2be602f1bc/659_bIB-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/47142d5c5f5b1859f3b7e8776d08b2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/47142d5c5f5b1859f3b7e8776d08b2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/ad185525d9a45aaf9b25d22aca9b40/659_bIB-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 376190104
[W::hts_idx_load3] The index file is older than the data file: 659_bIB-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	376190104
Known Splicing Events:	372373296
Partial Novel Splicing Events:	1539584
Novel Splicing Events:	2154749
Filtered Splicing Events:	122475

Total splicing  Junctions:	689409
Known Splicing Junctions:	291126
Partial Novel Splicing Junctions:	191847
Novel Splicing Junctions:	206436

===================================================================
Create BED file ...
Create Interact file ...