Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/cbcbe2c809898963decc5811902729/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/ac5fa0604f5965c14eced2773443f2/659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/cbcbe2c809898963decc5811902729/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 159279062
unpaired = 2680008
MERGED PAIRED END READS = 159279062
MATES PROCESSED = 321238132
TOTAL READS     = 161959070
DISTINCT READS  = 1.93631e+07
DISTINCT COUNTS = 1184
MAX COUNT       = 504139
COUNTS OF 1     = 4.36618e+06
MAX TERMS       = 100
OBSERVED COUNTS (504140)
1	4366181
2	1731694
3	1354719
4	1219116
5	1126465
6	1039481
7	953813
8	867778
9	783303
10	705179
11	626620
12	555721
13	489760
14	430234
15	376251
16	328034
17	285411
18	248148
19	214866
20	186022
21	161296
22	140409
23	121692
24	105792
25	92196
26	80437
27	70725
28	62458
29	54655
30	48656
31	43220
32	38851
33	34450
34	30639
35	27806
36	25054
37	22528
38	20644
39	18705
40	17180
41	15606
42	14505
43	13103
44	12239
45	11207
46	10378
47	9568
48	8900
49	8444
50	7889
51	7262
52	6716
53	6231
54	5809
55	5495
56	5068
57	4808
58	4348
59	4291
60	4001
61	3722
62	3574
63	3298
64	3078
65	2929
66	2809
67	2500
68	2373
69	2221
70	2196
71	2051
72	1849
73	1833
74	1767
75	1615
76	1548
77	1490
78	1431
79	1342
80	1230
81	1199
82	1130
83	1145
84	1113
85	1023
86	1006
87	928
88	871
89	825
90	822
91	818
92	789
93	712
94	760
95	756
96	630
97	624
98	623
99	595
100	574
101	565
102	584
103	565
104	539
105	528
106	491
107	470
108	496
109	449
110	445
111	418
112	451
113	398
114	375
115	366
116	355
117	350
118	353
119	374
120	331
121	311
122	306
123	297
124	298
125	279
126	293
127	278
128	260
129	295
130	290
131	261
132	241
133	256
134	228
135	232
136	245
137	241
138	227
139	210
140	196
141	221
142	182
143	202
144	183
145	201
146	183
147	173
148	164
149	183
150	163
151	159
152	154
153	187
154	145
155	151
156	144
157	157
158	140
159	132
160	140
161	122
162	133
163	113
164	142
165	137
166	107
167	127
168	108
169	114
170	115
171	110
172	110
173	115
174	81
175	89
176	97
177	111
178	87
179	86
180	83
181	107
182	103
183	71
184	91
185	97
186	81
187	82
188	87
189	94
190	103
191	81
192	84
193	98
194	77
195	68
196	67
197	81
198	88
199	76
200	71
201	58
202	89
203	81
204	70
205	67
206	70
207	59
208	61
209	68
210	68
211	61
212	77
213	51
214	63
215	56
216	53
217	63
218	51
219	63
220	53
221	47
222	47
223	49
224	54
225	48
226	59
227	48
228	51
229	58
230	59
231	50
232	53
233	31
234	51
235	49
236	54
237	56
238	39
239	37
240	35
241	56
242	56
243	49
244	39
245	42
246	37
247	38
248	28
249	28
250	37
251	42
252	36
253	36
254	31
255	34
256	31
257	38
258	39
259	34
260	42
261	29
262	25
263	41
264	26
265	37
266	24
267	32
268	25
269	28
270	36
271	25
272	32
273	31
274	32
275	32
276	24
277	39
278	32
279	31
280	28
281	26
282	31
283	22
284	26
285	26
286	25
287	30
288	35
289	25
290	22
291	25
292	22
293	23
294	27
295	18
296	24
297	28
298	17
299	28
300	23
301	12
302	21
303	23
304	20
305	18
306	28
307	16
308	23
309	23
310	23
311	19
312	18
313	16
314	22
315	24
316	25
317	16
318	22
319	25
320	18
321	9
322	25
323	20
324	11
325	14
326	11
327	27
328	26
329	20
330	24
331	24
332	25
333	10
334	17
335	14
336	17
337	13
338	15
339	14
340	20
341	10
342	16
343	15
344	8
345	15
346	16
347	12
348	13
349	9
350	17
351	10
352	15
353	20
354	17
355	11
356	17
357	13
358	13
359	11
360	18
361	10
362	9
363	9
364	15
365	16
366	18
367	9
368	10
369	14
370	9
371	5
372	17
373	8
374	7
375	18
376	13
377	9
378	14
379	17
380	9
381	12
382	14
383	11
384	8
385	9
386	14
387	5
388	15
389	17
390	9
391	13
392	8
393	10
394	11
395	14
396	10
397	10
398	11
399	11
400	10
401	17
402	12
403	12
404	7
405	5
406	11
407	5
408	8
409	5
410	5
411	8
412	6
413	7
414	10
415	12
416	11
417	3
418	7
419	7
420	7
421	8
422	11
423	15
424	11
425	8
426	7
427	7
428	11
429	12
430	6
431	3
432	8
433	7
434	9
435	13
436	6
437	5
438	12
439	12
440	4
441	10
442	12
443	11
444	8
445	9
446	12
447	9
448	8
449	10
450	7
451	5
452	5
453	5
454	4
455	4
456	6
457	8
458	9
459	7
460	9
461	6
462	8
463	9
464	3
465	6
466	5
467	7
468	6
469	6
470	7
471	7
472	8
473	10
474	4
475	5
476	5
477	5
478	9
479	6
480	7
481	5
482	3
483	4
484	5
485	5
486	10
487	2
488	4
489	10
490	5
491	5
492	2
493	7
494	6
495	4
496	10
497	1
498	5
499	6
500	7
501	2
502	7
503	5
504	6
505	5
506	8
507	5
508	6
509	9
510	3
511	7
512	6
513	5
514	2
515	3
516	5
517	6
518	4
519	5
520	4
521	7
522	5
523	3
524	8
525	6
526	2
527	6
528	4
529	4
530	5
531	5
532	8
533	6
534	5
535	5
536	4
537	8
538	4
539	4
540	2
541	5
542	6
543	3
544	6
545	2
546	8
547	4
548	2
549	3
550	3
551	8
552	7
553	4
554	4
555	2
556	5
557	4
558	1
559	4
560	2
561	8
562	6
563	10
564	4
565	3
566	5
567	3
568	5
569	3
570	1
571	3
572	7
573	6
574	4
575	2
576	4
577	5
578	2
579	5
580	3
581	5
582	6
583	1
584	1
585	2
586	2
587	3
588	2
589	6
590	2
591	3
592	2
593	2
594	1
595	6
597	2
598	5
599	4
600	3
601	3
602	3
603	3
604	1
605	2
606	4
607	4
608	2
609	1
610	4
611	3
613	7
614	4
615	6
616	3
617	2
618	3
619	1
620	5
621	2
622	2
623	3
624	3
625	3
626	4
628	2
629	1
630	2
631	1
632	3
633	1
634	3
635	5
636	3
637	5
638	1
639	6
640	2
641	3
642	2
643	3
644	4
645	4
646	3
647	4
648	2
649	3
651	3
652	5
653	4
654	2
656	4
657	5
658	1
659	3
660	3
661	4
662	2
663	6
664	2
665	3
666	2
667	4
669	2
671	2
672	1
673	2
674	2
676	1
678	2
679	1
680	3
681	2
682	3
683	6
684	4
685	2
686	3
687	1
688	1
689	3
690	3
691	1
692	2
693	3
694	2
695	6
696	5
697	3
698	1
699	3
700	1
701	2
702	1
703	4
704	4
705	2
706	5
707	2
708	3
709	6
710	1
711	3
712	3
713	3
714	1
715	4
717	1
718	1
719	4
720	3
721	4
723	2
724	5
725	1
726	2
727	1
728	4
729	1
731	3
732	1
733	1
734	2
735	3
736	3
737	1
738	2
739	3
740	1
741	4
743	3
745	4
746	2
747	2
748	2
749	2
751	5
752	5
753	3
754	2
755	1
756	1
757	3
759	2
761	2
762	1
765	2
766	3
767	1
768	2
769	1
770	3
771	1
772	4
776	1
777	4
778	2
779	1
780	1
781	3
783	1
785	2
786	2
787	1
788	2
789	3
790	1
791	1
792	1
793	1
794	1
795	2
796	4
798	2
801	1
802	1
803	1
804	2
805	1
806	2
807	2
808	1
809	1
810	3
811	1
814	2
815	1
816	1
817	4
818	1
819	1
820	1
821	2
822	5
823	1
824	1
825	2
826	2
828	1
829	1
830	3
831	2
832	3
833	6
835	1
836	1
837	2
838	1
841	1
842	2
843	1
845	4
846	1
847	2
848	2
850	2
851	2
853	1
854	2
855	1
856	2
857	1
858	2
859	1
861	3
862	1
863	1
864	1
866	1
867	1
869	4
870	1
871	2
872	3
873	1
875	1
877	1
879	1
880	2
886	1
887	1
888	2
889	3
890	1
891	1
900	1
901	2
903	1
904	1
905	1
906	1
907	3
908	2
909	1
911	1
913	1
915	1
916	1
918	1
920	1
922	2
926	1
927	2
928	4
929	1
930	1
931	2
932	2
933	1
934	2
936	3
938	1
939	1
940	1
944	3
945	2
947	1
949	1
950	2
951	1
952	1
955	1
956	1
957	2
959	1
960	1
963	2
964	1
967	1
968	1
969	2
970	1
971	1
972	2
974	3
976	1
978	1
980	1
981	2
982	2
983	1
984	1
985	1
988	1
989	1
990	1
992	1
993	1
995	1
996	1
1002	3
1004	1
1009	1
1012	1
1016	1
1017	1
1018	2
1019	1
1020	1
1021	2
1022	1
1023	1
1024	1
1025	1
1027	1
1028	1
1030	3
1032	1
1034	1
1035	2
1036	2
1041	1
1046	2
1047	3
1050	1
1051	1
1054	2
1055	1
1059	2
1063	1
1065	1
1071	1
1072	1
1075	1
1076	1
1078	1
1079	1
1082	1
1086	1
1088	2
1089	1
1094	2
1108	1
1113	1
1114	2
1115	3
1116	2
1117	2
1118	2
1122	2
1124	1
1125	1
1126	1
1127	1
1129	1
1130	1
1132	1
1134	1
1137	1
1139	4
1144	1
1148	1
1149	1
1155	1
1162	1
1163	1
1164	3
1166	1
1170	1
1172	1
1173	2
1183	1
1191	1
1192	1
1196	2
1198	2
1199	1
1201	1
1204	1
1205	1
1206	1
1209	1
1214	1
1220	1
1226	1
1228	2
1232	1
1233	2
1235	1
1237	1
1241	1
1243	2
1247	3
1249	2
1250	1
1251	2
1253	1
1257	1
1258	1
1269	1
1270	1
1272	1
1276	1
1277	1
1279	1
1283	3
1285	1
1286	1
1288	1
1290	1
1295	1
1301	1
1305	1
1306	1
1310	1
1313	1
1314	1
1316	1
1317	1
1320	1
1327	2
1328	1
1333	1
1340	1
1342	1
1349	1
1351	1
1354	1
1356	1
1358	1
1360	1
1361	1
1362	1
1363	1
1367	1
1377	1
1384	1
1400	1
1402	1
1406	1
1409	1
1412	1
1416	1
1420	1
1422	1
1430	1
1431	1
1432	1
1438	1
1462	1
1463	1
1474	1
1476	1
1478	1
1479	1
1481	2
1484	2
1485	1
1486	1
1487	1
1488	1
1493	1
1494	1
1495	1
1505	2
1510	1
1517	2
1528	2
1532	2
1538	1
1544	1
1567	1
1573	1
1575	1
1577	1
1581	1
1584	1
1592	1
1598	1
1599	1
1601	1
1605	1
1609	1
1620	1
1625	1
1628	1
1641	1
1644	1
1646	1
1661	1
1662	1
1667	1
1668	1
1674	1
1682	1
1684	2
1685	1
1700	1
1704	1
1712	1
1714	1
1748	1
1765	1
1769	1
1843	1
1849	1
1850	1
1856	1
1865	1
1907	1
1913	1
1922	1
1941	1
1975	1
1983	1
1997	1
2007	1
2014	1
2029	1
2037	1
2043	1
2056	1
2058	1
2070	1
2086	1
2096	1
2131	1
2136	1
2137	1
2150	1
2153	1
2174	1
2177	1
2181	1
2209	1
2234	1
2294	1
2306	1
2330	1
2410	1
2439	1
2452	1
2461	1
2496	1
2506	1
2622	1
2634	1
2653	1
2672	1
2711	1
2725	1
2778	1
2806	1
2874	1
3055	1
3154	1
3192	1
3195	1
3467	1
3487	1
3516	1
3567	1
4099	1
4213	1
4550	1
4663	1
4703	1
4731	1
4956	1
6246	1
6552	1
7735	1
10214	1
12743	1
504139	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
....................................................._..................
.............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]