Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/b2653f57905d2af564e2a1741af691/659_bGc-T1-TRNA-1_B23MHV2LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/b73d6dd4b20c4903baa15432b209c3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/b73d6dd4b20c4903baa15432b209c3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/faa24aedfa97ddc111723851721f12/659_bGc-T1-TRNA-1_B23MHV2LT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_bGc-T1-TRNA-1_B23MHV2LT4_1/abundance.h5
Successfully converted 659_bGc-T1-TRNA-1_B23MHV2LT4_1/abundance.h5 to 659_bGc-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv
  Sample: 659_bGc-T1-TRNA-1_B23MHV2LT4_1
  Mean Fragment Length: 117.8 bp
  Median Fragment Length: 109.0 bp
  pct_mito_est_counts: 0.019%
  pct_ribo_est_counts: 1.008%
  pct_hk_est_counts: 0.392%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.039%
  pct_ribo_tpm: 2.94%
  pct_hk_tpm: 0.575%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.089%