.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (659_mK-T1-TRNA-2_B23MHV2LT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/fd476351e3754177fce4564a9a9c4d/.command.err
Size: 16.0 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (659_mK-T1-TRNA-2_B23MHV2LT4_1)
Attempt
Content

Loading annotation
Read 3041209 records
Warning in parseGtfAttribute("exon_number", exons) :
  Failed to parse 'exon_number' attribute of 8 record(s).
Loading protein domains
Read 134356 records
Drawing fusion #1: EML4:ALK
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #2: EML4:ALK
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #3: EML4:ALK
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #4: EML4:ALK
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #5: MOCOS:FHOD3
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #6: MOCOS:FHOD3
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #7: MOCOS:FHOD3
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #8: TLK2:AC240565.1
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #9: TLK2P1:AC110079.1
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #10: TBP:ATXN3
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #11: TBP:ATXN3
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #12: TBP:ATXN3
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #13: TBP:ATXN3
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #14: TBP:ATXN3
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #15: TBP:ATXN3
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #16: TBP:ATXN3
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #17: TBP:ATXN3
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #18: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #19: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #20: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #21: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #22: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #23: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #24: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #25: PCDHA4:PCDHAC1
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #26: PCDHA4:PCDHAC2
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #27: TALDO1:EPS8L2
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #28: ARHGAP17:IL21R-AS1
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #29: LTA4H:FOCAD
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #30: LTA4H:FOCAD
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Done