Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/53cf39f6294566a8d9df277ab40e56/659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/4d20b04bdcdfbab52963e2318f67c6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/4d20b04bdcdfbab52963e2318f67c6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/d6b21777eaa44be50abd18de7f4251/659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 336039954
[W::hts_idx_load3] The index file is older than the data file: 659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	336039954
Known Splicing Events:	333585537
Partial Novel Splicing Events:	1498872
Novel Splicing Events:	781779
Filtered Splicing Events:	173766

Total splicing  Junctions:	587239
Known Splicing Junctions:	281574
Partial Novel Splicing Junctions:	167522
Novel Splicing Junctions:	138143

===================================================================
Create BED file ...
Create Interact file ...