Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/0e0993d4aa63901d356fb15576149d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/0e0993d4aa63901d356fb15576149d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/dde4de080fccda79d1586d5ef24e0f/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/ecd326546f2f66e7990b3d1c9b38e3/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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