Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/bf9d5023d1dbda636e538cae24b759/659_bhK-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/e63b00af0097c9a292b777a69c5651/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/e63b00af0097c9a292b777a69c5651/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/5f0b4e94c40683ce2acca17a73c04d/659_bhK-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bhK-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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