Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/e35f8ce7eb8c5d22f4b7b21b96c7ae/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/e35f8ce7eb8c5d22f4b7b21b96c7ae/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/3254e0ec4f670ab5dc5420baf18192/659_dfA-T1-TRNA-1_B23MHV2LT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/3254e0ec4f670ab5dc5420baf18192/659_dfA-T1-TRNA-1_B23MHV2LT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory