File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/653769f75e74b825b48f9c1b66148d/.command.log
Size
9.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_b7Z-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/0c8beb29df608e70d1752875056023/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/653769f75e74b825b48f9c1b66148d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/653769f75e74b825b48f9c1b66148d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/2973f5ce9f56393c0b0d830bc91a7b/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
ETV6--FAR2
starfusion
arriba
TLK2--AC240565.1
starfusion
FSIP1--AC013652.1
starfusion
arriba
CDK19--RPF2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
CFLAR-AS1--PIP5K1B
starfusion
RPF2--CDK19
starfusion
arriba
AC124944.2--SDHAP1
starfusion
AGAP12P--FRMPD2
starfusion
FBXO25--AC240565.1
starfusion
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
HGD--GTF2E1
arriba
LINC00993--PVT1
arriba
TVP23C--CDRT4
arriba
CDKN2A--CDKN2A
arriba
STX16--NPEPL1
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
ATIC--AC092844.1
arriba
AC015911.9--SLFN12L
arriba
CRYZL2P--SEC16B
arriba
CCDC169--SOHLH2
arriba
KLRC4--KLRK1
arriba
DUOX1--DUOX1
arriba
TLK2--LINC01347
arriba

  0%|          | 0/45 [00:00<?, ?it/s]
Processing ETV6--FAR2:   0%|          | 0/45 [00:00<?, ?it/s]
Processing ETV6--FAR2:   2%|▏         | 1/45 [00:00<00:04,  9.23it/s]
Processing TLK2--AC240565.1:   2%|▏         | 1/45 [00:00<00:04,  9.23it/s]
Processing TLK2--AC240565.1:   4%|▍         | 2/45 [00:00<00:04,  9.47it/s]
Processing FSIP1--AC013652.1:   4%|▍         | 2/45 [00:00<00:04,  9.47it/s]
Processing FSIP1--AC013652.1:   7%|▋         | 3/45 [00:00<00:04,  9.55it/s]
Processing CDK19--RPF2:   7%|▋         | 3/45 [00:00<00:04,  9.55it/s]      
Processing CDK19--RPF2:   9%|▉         | 4/45 [00:00<00:04,  9.58it/s]
Processing TLK2P1--AC110079.1:   9%|▉         | 4/45 [00:00<00:04,  9.58it/s]
Processing TLK2P1--AC110079.1:  11%|█         | 5/45 [00:00<00:04,  9.61it/s]
Processing CFLAR-AS1--PIP5K1B:  11%|█         | 5/45 [00:00<00:04,  9.61it/s]
Processing CFLAR-AS1--PIP5K1B:  13%|█▎        | 6/45 [00:00<00:04,  9.62it/s]
Processing RPF2--CDK19:  13%|█▎        | 6/45 [00:00<00:04,  9.62it/s]       
Processing RPF2--CDK19:  16%|█▌        | 7/45 [00:00<00:03,  9.63it/s]
Processing AC124944.2--SDHAP1:  16%|█▌        | 7/45 [00:00<00:03,  9.63it/s]
Processing AC124944.2--SDHAP1:  18%|█▊        | 8/45 [00:00<00:03,  9.64it/s]
Processing AGAP12P--FRMPD2:  18%|█▊        | 8/45 [00:00<00:03,  9.64it/s]   
Processing AGAP12P--FRMPD2:  20%|██        | 9/45 [00:00<00:03,  9.64it/s]
Processing FBXO25--AC240565.1:  20%|██        | 9/45 [00:00<00:03,  9.64it/s]
Processing FBXO25--AC240565.1:  22%|██▏       | 10/45 [00:01<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGA8:  22%|██▏       | 10/45 [00:01<00:03,  9.64it/s]  
Processing PCDHGA5--PCDHGA8:  24%|██▍       | 11/45 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGC5:  24%|██▍       | 11/45 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGC5:  27%|██▋       | 12/45 [00:01<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGC4:  27%|██▋       | 12/45 [00:01<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGC4:  29%|██▉       | 13/45 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGB6:  29%|██▉       | 13/45 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGB6:  31%|███       | 14/45 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGA10:  31%|███       | 14/45 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGA10:  33%|███▎      | 15/45 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGC3:  33%|███▎      | 15/45 [00:01<00:03,  9.65it/s] 
Processing PCDHGA5--PCDHGC3:  36%|███▌      | 16/45 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGA11:  36%|███▌      | 16/45 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGA11:  38%|███▊      | 17/45 [00:01<00:02,  9.64it/s]
Processing PCDHGA5--PCDHGB7:  38%|███▊      | 17/45 [00:01<00:02,  9.64it/s] 
Processing PCDHGA5--PCDHGB7:  40%|████      | 18/45 [00:01<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGA9:  40%|████      | 18/45 [00:01<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGA9:  42%|████▏     | 19/45 [00:01<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGA12:  42%|████▏     | 19/45 [00:01<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGA12:  44%|████▍     | 20/45 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  44%|████▍     | 20/45 [00:02<00:02,  9.65it/s] 
Processing PCDHGB2--PCDHGA8:  47%|████▋     | 21/45 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  47%|████▋     | 21/45 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  49%|████▉     | 22/45 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  49%|████▉     | 22/45 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  51%|█████     | 23/45 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  51%|█████     | 23/45 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  53%|█████▎    | 24/45 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  53%|█████▎    | 24/45 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  56%|█████▌    | 25/45 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  56%|█████▌    | 25/45 [00:02<00:02,  9.65it/s] 
Processing PCDHGB2--PCDHGC3:  58%|█████▊    | 26/45 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  58%|█████▊    | 26/45 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  60%|██████    | 27/45 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  60%|██████    | 27/45 [00:02<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGB7:  62%|██████▏   | 28/45 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  62%|██████▏   | 28/45 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  64%|██████▍   | 29/45 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  64%|██████▍   | 29/45 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  67%|██████▋   | 30/45 [00:03<00:01,  9.65it/s]
Processing HGD--GTF2E1:  67%|██████▋   | 30/45 [00:03<00:01,  9.65it/s]      
Processing HGD--GTF2E1:  69%|██████▉   | 31/45 [00:03<00:01,  9.65it/s]
Processing LINC00993--PVT1:  69%|██████▉   | 31/45 [00:03<00:01,  9.65it/s]
Processing LINC00993--PVT1:  71%|███████   | 32/45 [00:03<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  71%|███████   | 32/45 [00:03<00:01,  9.65it/s]  
Processing TVP23C--CDRT4:  73%|███████▎  | 33/45 [00:03<00:01,  9.65it/s]
Processing CDKN2A--CDKN2A:  73%|███████▎  | 33/45 [00:03<00:01,  9.65it/s]
Processing CDKN2A--CDKN2A:  76%|███████▌  | 34/45 [00:03<00:01,  9.65it/s]
Processing STX16--NPEPL1:  76%|███████▌  | 34/45 [00:03<00:01,  9.65it/s] 
Processing STX16--NPEPL1:  78%|███████▊  | 35/45 [00:03<00:01,  9.65it/s]
Processing PCDHA10--PCDHAC1:  78%|███████▊  | 35/45 [00:03<00:01,  9.65it/s]
Processing PCDHA10--PCDHAC1:  80%|████████  | 36/45 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  80%|████████  | 36/45 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  82%|████████▏ | 37/45 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  82%|████████▏ | 37/45 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  84%|████████▍ | 38/45 [00:03<00:00,  9.65it/s]
Processing ATIC--AC092844.1:  84%|████████▍ | 38/45 [00:03<00:00,  9.65it/s]
Processing ATIC--AC092844.1:  87%|████████▋ | 39/45 [00:04<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  87%|████████▋ | 39/45 [00:04<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  89%|████████▉ | 40/45 [00:04<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  89%|████████▉ | 40/45 [00:04<00:00,  9.65it/s]    
Processing CRYZL2P--SEC16B:  91%|█████████ | 41/45 [00:04<00:00,  9.65it/s]
Processing CCDC169--SOHLH2:  91%|█████████ | 41/45 [00:04<00:00,  9.65it/s]
Processing CCDC169--SOHLH2:  93%|█████████▎| 42/45 [00:04<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  93%|█████████▎| 42/45 [00:04<00:00,  9.65it/s]   
Processing KLRC4--KLRK1:  96%|█████████▌| 43/45 [00:04<00:00,  9.65it/s]
Processing DUOX1--DUOX1:  96%|█████████▌| 43/45 [00:04<00:00,  9.65it/s]
Processing DUOX1--DUOX1:  98%|█████████▊| 44/45 [00:04<00:00,  9.65it/s]
Processing TLK2--LINC01347:  98%|█████████▊| 44/45 [00:04<00:00,  9.65it/s]
Processing TLK2--LINC01347: 100%|██████████| 45/45 [00:04<00:00,  9.65it/s]
Processing TLK2--LINC01347: 100%|██████████| 45/45 [00:04<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory