File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/a5cd8dfa20e8f34c686f0153333fc9/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:12:39Z thread 439 Sample sheet being processed by common lib? Yes
2026-06-08T06:12:39Z thread 439 SampleSheet Settings: 
2026-06-08T06:12:39Z thread 439   FastqCompressionFormat = gzip
2026-06-08T06:12:39Z thread 439   NoLaneSplitting = FALSE
2026-06-08T06:12:39Z thread 439   OverrideCycles = Y151;I10;I10;Y151
2026-06-08T06:12:39Z thread 439   SoftwareVersion = 4.3.6
2026-06-08T06:12:39Z thread 439 
2026-06-08T06:12:39Z thread 439 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:12:39Z thread 439 shared-thread-linux-native-asio output is disabled
2026-06-08T06:12:39Z thread 439 bcl-convert Version 4.4.6
2026-06-08T06:12:39Z thread 439 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:12:39Z thread 439 Command Line: --tiles s_8 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:12:39Z thread 439 Conversion Begins.
2026-06-08T06:12:39Z thread 439 Input BCL Information:
2026-06-08T06:12:39Z thread 439     Read Structure: 2026-06-08T06:12:39Z thread 439 Y1512026-06-08T06:12:39Z thread 439 ;2026-06-08T06:12:39Z thread 439 I102026-06-08T06:12:39Z thread 439 ;2026-06-08T06:12:39Z thread 439 I102026-06-08T06:12:39Z thread 439 ;2026-06-08T06:12:39Z thread 439 Y1512026-06-08T06:12:39Z thread 439 
2026-06-08T06:12:39Z thread 439     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:12:39Z thread 439     BCL file format: cbcl
2026-06-08T06:12:39Z thread 439     Positions file format: slocs
2026-06-08T06:12:39Z thread 439     Filter file format: filter
2026-06-08T06:12:39Z thread 439 Conversion Information:
2026-06-08T06:12:39Z thread 439     Tile filtering: converting 784/6272 tiles
2026-06-08T06:12:39Z thread 439     Sample Count for Lane 1: 48
2026-06-08T06:12:39Z thread 439     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:12:39Z thread 439     Sample Count for Lane 2: 48
2026-06-08T06:12:39Z thread 439     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:12:39Z thread 439     Sample Count for Lane 3: 48
2026-06-08T06:12:39Z thread 439     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:12:39Z thread 439     Sample Count for Lane 4: 48
2026-06-08T06:12:39Z thread 439     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:12:39Z thread 439     Sample Count for Lane 5: 48
2026-06-08T06:12:39Z thread 439     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:12:39Z thread 439     Sample Count for Lane 6: 48
2026-06-08T06:12:39Z thread 439     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:12:39Z thread 439     Sample Count for Lane 7: 48
2026-06-08T06:12:39Z thread 439     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:12:39Z thread 439     Sample Count for Lane 8: 48
2026-06-08T06:12:39Z thread 439     Expected number of sample FASTQ files to be created: 96
2026-06-08T06:12:39Z thread 439 # CPU hw threads available: 64
2026-06-08T06:12:40Z thread 439 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:12:40Z thread 439 SW compressors: 64
2026-06-08T06:12:40Z thread 439 SW decompressors: 32
2026-06-08T06:12:40Z thread 439 SW FASTQ compression level: 1
2026-06-08T06:38:46Z thread 439 Lane 8 Post-run Information:
2026-06-08T06:38:46Z thread 439     Total clusters: 4002815434
2026-06-08T06:38:46Z thread 439     Total Genomic Reads: 8005630868
2026-06-08T06:38:46Z thread 439     Total Genomic Input Gigabases 1208.85
2026-06-08T06:38:46Z thread 439     Minimum reads for a sample: 96360
2026-06-08T06:38:46Z thread 439     Maximum reads for a sample: 457463462
2026-06-08T06:38:46Z thread 439     Average reads per sample: 155713940.75
2026-06-08T06:38:46Z thread 439     Undetermined reads: 531361712
2026-06-08T06:38:48Z thread 439 Conversion Complete.