[W::hts_idx_load3] The index file is older than the data file: 659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	143445537
Known Splicing Events:	141942314
Partial Novel Splicing Events:	685536
Novel Splicing Events:	747815
Filtered Splicing Events:	69872

Total splicing  Junctions:	228741
Known Splicing Junctions:	181927
Partial Novel Splicing Junctions:	26013
Novel Splicing Junctions:	20801

===================================================================
Create BED file ...
Create Interact file ...