File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/4353bfa1bd178f3c347b4c04d11c6d/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (659_bMa-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/1735c20debd3c1cff974f5c0e74980/659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/4353bfa1bd178f3c347b4c04d11c6d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/ac5fa0604f5965c14eced2773443f2/659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/4353bfa1bd178f3c347b4c04d11c6d/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 143445537
[W::hts_idx_load3] The index file is older than the data file: 659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	143445537
Known Splicing Events:	141942314
Partial Novel Splicing Events:	685536
Novel Splicing Events:	747815
Filtered Splicing Events:	69872

Total splicing  Junctions:	228741
Known Splicing Junctions:	181927
Partial Novel Splicing Junctions:	26013
Novel Splicing Junctions:	20801

===================================================================
Create BED file ...
Create Interact file ...