[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	189064900
Known Splicing Events:	187143760
Partial Novel Splicing Events:	952213
Novel Splicing Events:	890670
Filtered Splicing Events:	78257

Total splicing  Junctions:	394143
Known Splicing Junctions:	242056
Partial Novel Splicing Junctions:	88669
Novel Splicing Junctions:	63418

===================================================================
Create BED file ...
Create Interact file ...