Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/279a83beca5753166a6cfe564511f1/fi_workdir/659_cIX-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/21d53f3ed9d0b5a2d9d8963ed55403/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/21d53f3ed9d0b5a2d9d8963ed55403/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 9779
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 9779
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:9779
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC068489.1--USP39 HAVANA gene 11639 27386 . + . FI_gene_label "USP39^ENSG00000168883.20" ; ID "AC068489.1--USP39^USP39^ENSG00000168883.20" ; ccdsid "CCDS33234.1" ; exon_id "ENSE00001893724.1" ; exon_number 1 ; gene_id "AC068489.1--USP39^USP39^ENSG00000168883.20" ; gene_name USP39 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153090.11" ; havana_transcript "OTTHUMT00000329892.2" ; hgnc_id "HGNC:20071" ; level 2 ; orig_coord_info "chr2,85616196,85616463,+" ; protein_id "ENSP00000312981.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC068489.1--USP39^ENST00000323701.11" ; transcript_name "USP39-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC068489.1--USP39 HAVANA mRNA 11639 27386 . + . FI_gene_label "USP39^ENSG00000168883.20" ; ID "AC068489.1--USP39^ENST00000323701.11" ; Parent "AC068489.1--USP39^USP39^ENSG00000168883.20" ; ccdsid "CCDS33234.1" ; exon_id "ENSE00001893724.1" ; exon_number 1 ; gene_id "AC068489.1--USP39^USP39^ENSG00000168883.20" ; gene_name USP39 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153090.11" ; havana_transcript "OTTHUMT00000329892.2" ; hgnc_id "HGNC:20071" ; level 2 ; orig_coord_info "chr2,85616196,85616463,+" ; protein_id "ENSP00000312981.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC068489.1--USP39^ENST00000323701.11" ; transcript_name "USP39-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC103871.1--DMD HAVANA gene 8813 35451 . + . FI_gene_label "DMD^ENSG00000198947.17" ; ID "AC103871.1--DMD^DMD^ENSG00000198947.17" ; exon_id "ENSE00001478378.2" ; exon_number 1 ; gene_id "AC103871.1--DMD^DMD^ENSG00000198947.17" ; gene_name DMD ; gene_type protein_coding ; havana_gene "OTTHUMG00000021336.7" ; havana_transcript "OTTHUMT00000056183.1" ; hgnc_id "HGNC:2928" ; level 2 ; orig_coord_info "chrX,33339259,33339265,-" ; protein_id "ENSP00000288447.4" ; tag basic ; transcript_id "AC103871.1--DMD^ENST00000288447.9" ; transcript_name "DMD-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC103871.1--DMD HAVANA mRNA 8813 35451 . + . FI_gene_label "DMD^ENSG00000198947.17" ; ID "AC103871.1--DMD^ENST00000288447.9" ; Parent "AC103871.1--DMD^DMD^ENSG00000198947.17" ; exon_id "ENSE00001478378.2" ; exon_number 1 ; gene_id "AC103871.1--DMD^DMD^ENSG00000198947.17" ; gene_name DMD ; gene_type protein_coding ; havana_gene "OTTHUMG00000021336.7" ; havana_transcript "OTTHUMT00000056183.1" ; hgnc_id "HGNC:2928" ; level 2 ; orig_coord_info "chrX,33339259,33339265,-" ; protein_id "ENSP00000288447.4" ; tag basic ; transcript_id "AC103871.1--DMD^ENST00000288447.9" ; transcript_name "DMD-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL135878.1--MOXD1 HAVANA gene 37027 48932 . + . FI_gene_label "MOXD1^ENSG00000079931.15" ; ID "AL135878.1--MOXD1^MOXD1^ENSG00000079931.15" ; exon_id "ENSE00001646093.2" ; exon_number 1 ; gene_id "AL135878.1--MOXD1^MOXD1^ENSG00000079931.15" ; gene_name MOXD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000055853.5" ; havana_transcript "OTTHUMT00000125836.3" ; hgnc_id "HGNC:21063" ; level 2 ; orig_coord_info "chr6,132374631,132374837,-" ; protein_id "ENSP00000336998.3" ; tag basic ; transcript_id "AL135878.1--MOXD1^ENST00000336749.3" ; transcript_name "MOXD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL135878.1--MOXD1 HAVANA mRNA 37027 48932 . + . FI_gene_label "MOXD1^ENSG00000079931.15" ; ID "AL135878.1--MOXD1^ENST00000336749.3" ; Parent "AL135878.1--MOXD1^MOXD1^ENSG00000079931.15" ; exon_id "ENSE00001646093.2" ; exon_number 1 ; gene_id "AL135878.1--MOXD1^MOXD1^ENSG00000079931.15" ; gene_name MOXD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000055853.5" ; havana_transcript "OTTHUMT00000125836.3" ; hgnc_id "HGNC:21063" ; level 2 ; orig_coord_info "chr6,132374631,132374837,-" ; protein_id "ENSP00000336998.3" ; tag basic ; transcript_id "AL135878.1--MOXD1^ENST00000336749.3" ; transcript_name "MOXD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AMBRA1--BARD1 HAVANA gene 31347 48999 . + . FI_gene_label "BARD1^ENSG00000138376.11" ; ID "AMBRA1--BARD1^BARD1^ENSG00000138376.11" ; ccdsid "CCDS2397.1" ; exon_id "ENSE00003740707.1" ; exon_number 1 ; gene_id "AMBRA1--BARD1^BARD1^ENSG00000138376.11" ; gene_name BARD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133016.9" ; havana_transcript "OTTHUMT00000256602.2" ; hgnc_id "HGNC:952" ; level 2 ; orig_coord_info "chr2,214809412,214809569,-" ; protein_id "ENSP00000260947.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "AMBRA1--BARD1^ENST00000260947.9" ; transcript_name "BARD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AMBRA1--BARD1 HAVANA mRNA 31347 48999 . + . FI_gene_label "BARD1^ENSG00000138376.11" ; ID "AMBRA1--BARD1^ENST00000260947.9" ; Parent "AMBRA1--BARD1^BARD1^ENSG00000138376.11" ; ccdsid "CCDS2397.1" ; exon_id "ENSE00003740707.1" ; exon_number 1 ; gene_id "AMBRA1--BARD1^BARD1^ENSG00000138376.11" ; gene_name BARD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133016.9" ; havana_transcript "OTTHUMT00000256602.2" ; hgnc_id "HGNC:952" ; level 2 ; orig_coord_info "chr2,214809412,214809569,-" ; protein_id "ENSP00000260947.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "AMBRA1--BARD1^ENST00000260947.9" ; transcript_name "BARD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AMBRA1--BARD1 HAVANA gene 2358 28346 . + . FI_gene_label "AMBRA1^ENSG00000110497.14" ; ID "AMBRA1--BARD1^AMBRA1^ENSG00000110497.14" ; ccdsid "CCDS31475.1" ; exon_id "ENSE00003565359.1" ; exon_number 2 ; gene_id "AMBRA1--BARD1^AMBRA1^ENSG00000110497.14" ; gene_name AMBRA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166500.5" ; havana_transcript "OTTHUMT00000390099.1" ; hgnc_id "HGNC:25990" ; level 2 ; orig_coord_info "chr11,46548246,46548380,-" ; protein_id "ENSP00000318313.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "AMBRA1--BARD1^ENST00000314845.7" ; transcript_name "AMBRA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AMBRA1--BARD1 HAVANA mRNA 2358 28346 . + . FI_gene_label "AMBRA1^ENSG00000110497.14" ; ID "AMBRA1--BARD1^ENST00000314845.7" ; Parent "AMBRA1--BARD1^AMBRA1^ENSG00000110497.14" ; ccdsid "CCDS31475.1" ; exon_id "ENSE00003565359.1" ; exon_number 2 ; gene_id "AMBRA1--BARD1^AMBRA1^ENSG00000110497.14" ; gene_name AMBRA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166500.5" ; havana_transcript "OTTHUMT00000390099.1" ; hgnc_id "HGNC:25990" ; level 2 ; orig_coord_info "chr11,46548246,46548380,-" ; protein_id "ENSP00000318313.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "AMBRA1--BARD1^ENST00000314845.7" ; transcript_name "AMBRA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARHGAP1--AC068051.1 HAVANA gene 1001 13176 . + . FI_gene_label "ARHGAP1^ENSG00000175220.12" ; ID "ARHGAP1--AC068051.1^ARHGAP1^ENSG00000175220.12" ; ccdsid "CCDS7922.1" ; exon_id "ENSE00003641077.1" ; exon_number 2 ; gene_id "ARHGAP1--AC068051.1^ARHGAP1^ENSG00000175220.12" ; gene_name ARHGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166567.3" ; havana_transcript "OTTHUMT00000390472.2" ; hgnc_id "HGNC:673" ; level 2 ; orig_coord_info "chr11,46695975,46696107,-" ; protein_id "ENSP00000310491.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARHGAP1--AC068051.1^ENST00000311956.9" ; transcript_name "ARHGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARHGAP1--AC068051.1 HAVANA mRNA 1001 13176 . + . FI_gene_label "ARHGAP1^ENSG00000175220.12" ; ID "ARHGAP1--AC068051.1^ENST00000311956.9" ; Parent "ARHGAP1--AC068051.1^ARHGAP1^ENSG00000175220.12" ; ccdsid "CCDS7922.1" ; exon_id "ENSE00003641077.1" ; exon_number 2 ; gene_id "ARHGAP1--AC068051.1^ARHGAP1^ENSG00000175220.12" ; gene_name ARHGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166567.3" ; havana_transcript "OTTHUMT00000390472.2" ; hgnc_id "HGNC:673" ; level 2 ; orig_coord_info "chr11,46695975,46696107,-" ; protein_id "ENSP00000310491.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARHGAP1--AC068051.1^ENST00000311956.9" ; transcript_name "ARHGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CASC15--GRIA4 HAVANA gene 100201 130450 . + . FI_gene_label "GRIA4^ENSG00000152578.13" ; ID "CASC15--GRIA4^GRIA4^ENSG00000152578.13" ; ccdsid "CCDS8333.1" ; exon_id "ENSE00003895763.1" ; exon_number 2 ; gene_id "CASC15--GRIA4^GRIA4^ENSG00000152578.13" ; gene_name GRIA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166236.5" ; havana_transcript "OTTHUMT00000504290.2" ; hgnc_id "HGNC:4574" ; level 2 ; orig_coord_info "chr11,105610998,105611085,+" ; protein_id "ENSP00000282499.5" ; tag RNA_Seq_supported_only basic MANE_Select CCDS ; transcript_id "CASC15--GRIA4^ENST00000282499.10" ; transcript_name "GRIA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
CASC15--GRIA4 HAVANA mRNA 100201 130450 . + . FI_gene_label "GRIA4^ENSG00000152578.13" ; ID "CASC15--GRIA4^ENST00000282499.10" ; Parent "CASC15--GRIA4^GRIA4^ENSG00000152578.13" ; ccdsid "CCDS8333.1" ; exon_id "ENSE00003895763.1" ; exon_number 2 ; gene_id "CASC15--GRIA4^GRIA4^ENSG00000152578.13" ; gene_name GRIA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166236.5" ; havana_transcript "OTTHUMT00000504290.2" ; hgnc_id "HGNC:4574" ; level 2 ; orig_coord_info "chr11,105610998,105611085,+" ; protein_id "ENSP00000282499.5" ; tag RNA_Seq_supported_only basic MANE_Select CCDS ; transcript_id "CASC15--GRIA4^ENST00000282499.10" ; transcript_name "GRIA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CBLB--KCNAB1 HAVANA gene 44797 65260 . + . FI_gene_label "KCNAB1^ENSG00000169282.18" ; ID "CBLB--KCNAB1^KCNAB1^ENSG00000169282.18" ; ccdsid "CCDS33882.1" ; exon_id "ENSE00001886961.1" ; exon_number 1 ; gene_id "CBLB--KCNAB1^KCNAB1^ENSG00000169282.18" ; gene_name KCNAB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158552.4" ; havana_transcript "OTTHUMT00000351265.1" ; hgnc_id "HGNC:6228" ; level 2 ; orig_coord_info "chr3,156291908,156292128,+" ; protein_id "ENSP00000305858.8" ; tag basic appris_principal_1 CCDS ; transcript_id "CBLB--KCNAB1^ENST00000302490.12" ; transcript_name "KCNAB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CBLB--KCNAB1 HAVANA mRNA 44797 65260 . + . FI_gene_label "KCNAB1^ENSG00000169282.18" ; ID "CBLB--KCNAB1^ENST00000302490.12" ; Parent "CBLB--KCNAB1^KCNAB1^ENSG00000169282.18" ; ccdsid "CCDS33882.1" ; exon_id "ENSE00001886961.1" ; exon_number 1 ; gene_id "CBLB--KCNAB1^KCNAB1^ENSG00000169282.18" ; gene_name KCNAB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158552.4" ; havana_transcript "OTTHUMT00000351265.1" ; hgnc_id "HGNC:6228" ; level 2 ; orig_coord_info "chr3,156291908,156292128,+" ; protein_id "ENSP00000305858.8" ; tag basic appris_principal_1 CCDS ; transcript_id "CBLB--KCNAB1^ENST00000302490.12" ; transcript_name "KCNAB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CBLB--KCNAB1 HAVANA gene 1541 35680 . + . FI_gene_label "CBLB^ENSG00000114423.23" ; ID "CBLB--KCNAB1^CBLB^ENSG00000114423.23" ; ccdsid "CCDS2948.1" ; exon_id "ENSE00003680223.1" ; exon_number 2 ; gene_id "CBLB--KCNAB1^CBLB^ENSG00000114423.23" ; gene_name CBLB ; gene_type protein_coding ; havana_gene "OTTHUMG00000150654.18" ; havana_transcript "OTTHUMT00000501603.1" ; hgnc_id "HGNC:1542" ; level 2 ; orig_coord_info "chr3,105867410,105867577,-" ; protein_id "ENSP00000377598.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CBLB--KCNAB1^ENST00000394030.8" ; transcript_name "CBLB-201" ; transcript_support_level 1 ; transcript_type protein_coding
CBLB--KCNAB1 HAVANA mRNA 1541 35680 . + . FI_gene_label "CBLB^ENSG00000114423.23" ; ID "CBLB--KCNAB1^ENST00000394030.8" ; Parent "CBLB--KCNAB1^CBLB^ENSG00000114423.23" ; ccdsid "CCDS2948.1" ; exon_id "ENSE00003680223.1" ; exon_number 2 ; gene_id "CBLB--KCNAB1^CBLB^ENSG00000114423.23" ; gene_name CBLB ; gene_type protein_coding ; havana_gene "OTTHUMG00000150654.18" ; havana_transcript "OTTHUMT00000501603.1" ; hgnc_id "HGNC:1542" ; level 2 ; orig_coord_info "chr3,105867410,105867577,-" ; protein_id "ENSP00000377598.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CBLB--KCNAB1^ENST00000394030.8" ; transcript_name "CBLB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CBLB--LEKR1 HAVANA gene 39507 60206 . + . FI_gene_label "LEKR1^ENSG00000197980.13" ; ID "CBLB--LEKR1^LEKR1^ENSG00000197980.13" ; exon_id "ENSE00003634949.1" ; exon_number 2 ; gene_id "CBLB--LEKR1^LEKR1^ENSG00000197980.13" ; gene_name LEKR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160130.3" ; havana_transcript "OTTHUMT00000505261.1" ; hgnc_id "HGNC:33765" ; level 2 ; orig_coord_info "chr3,156829330,156829377,+" ; protein_id "ENSP00000348936.4" ; tag not_organism_supported basic appris_principal_1 ; transcript_id "CBLB--LEKR1^ENST00000356539.8" ; transcript_name "LEKR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
CBLB--LEKR1 HAVANA mRNA 39507 60206 . + . FI_gene_label "LEKR1^ENSG00000197980.13" ; ID "CBLB--LEKR1^ENST00000356539.8" ; Parent "CBLB--LEKR1^LEKR1^ENSG00000197980.13" ; exon_id "ENSE00003634949.1" ; exon_number 2 ; gene_id "CBLB--LEKR1^LEKR1^ENSG00000197980.13" ; gene_name LEKR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160130.3" ; havana_transcript "OTTHUMT00000505261.1" ; hgnc_id "HGNC:33765" ; level 2 ; orig_coord_info "chr3,156829330,156829377,+" ; protein_id "ENSP00000348936.4" ; tag not_organism_supported basic appris_principal_1 ; transcript_id "CBLB--LEKR1^ENST00000356539.8" ; transcript_name "LEKR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CBLB--LEKR1 HAVANA gene 1541 35680 . + . FI_gene_label "CBLB^ENSG00000114423.23" ; ID "CBLB--LEKR1^CBLB^ENSG00000114423.23" ; ccdsid "CCDS2948.1" ; exon_id "ENSE00003680223.1" ; exon_number 2 ; gene_id "CBLB--LEKR1^CBLB^ENSG00000114423.23" ; gene_name CBLB ; gene_type protein_coding ; havana_gene "OTTHUMG00000150654.18" ; havana_transcript "OTTHUMT00000501603.1" ; hgnc_id "HGNC:1542" ; level 2 ; orig_coord_info "chr3,105867410,105867577,-" ; protein_id "ENSP00000377598.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CBLB--LEKR1^ENST00000394030.8" ; transcript_name "CBLB-201" ; transcript_support_level 1 ; transcript_type protein_coding
CBLB--LEKR1 HAVANA mRNA 1541 35680 . + . FI_gene_label "CBLB^ENSG00000114423.23" ; ID "CBLB--LEKR1^ENST00000394030.8" ; Parent "CBLB--LEKR1^CBLB^ENSG00000114423.23" ; ccdsid "CCDS2948.1" ; exon_id "ENSE00003680223.1" ; exon_number 2 ; gene_id "CBLB--LEKR1^CBLB^ENSG00000114423.23" ; gene_name CBLB ; gene_type protein_coding ; havana_gene "OTTHUMG00000150654.18" ; havana_transcript "OTTHUMT00000501603.1" ; hgnc_id "HGNC:1542" ; level 2 ; orig_coord_info "chr3,105867410,105867577,-" ; protein_id "ENSP00000377598.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CBLB--LEKR1^ENST00000394030.8" ; transcript_name "CBLB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CNTNAP3C--BX005040.4 HAVANA gene 1001 10382 . + . FI_gene_label "CNTNAP3C^ENSG00000283378.1" ; ID "CNTNAP3C--BX005040.4^CNTNAP3C^ENSG00000283378.1" ; exon_id "ENSE00003794646.1" ; exon_number 1 ; gene_id "CNTNAP3C--BX005040.4^CNTNAP3C^ENSG00000283378.1" ; gene_name CNTNAP3C ; gene_type protein_coding ; havana_gene "OTTHUMG00000191808.1" ; havana_transcript "OTTHUMT00000490176.1" ; hgnc_id "HGNC:53878" ; level 2 ; orig_coord_info "chr9,61330968,61331052,+" ; protein_id "ENSP00000489658.1" ; tag mRNA_end_NF cds_end_NF basic appris_principal_1 ; transcript_id "CNTNAP3C--BX005040.4^ENST00000636699.1" ; transcript_name "CNTNAP3C-201" ; transcript_support_level 5 ; transcript_type protein_coding
CNTNAP3C--BX005040.4 HAVANA mRNA 1001 10382 . + . FI_gene_label "CNTNAP3C^ENSG00000283378.1" ; ID "CNTNAP3C--BX005040.4^ENST00000636699.1" ; Parent "CNTNAP3C--BX005040.4^CNTNAP3C^ENSG00000283378.1" ; exon_id "ENSE00003794646.1" ; exon_number 1 ; gene_id "CNTNAP3C--BX005040.4^CNTNAP3C^ENSG00000283378.1" ; gene_name CNTNAP3C ; gene_type protein_coding ; havana_gene "OTTHUMG00000191808.1" ; havana_transcript "OTTHUMT00000490176.1" ; hgnc_id "HGNC:53878" ; level 2 ; orig_coord_info "chr9,61330968,61331052,+" ; protein_id "ENSP00000489658.1" ; tag mRNA_end_NF cds_end_NF basic appris_principal_1 ; transcript_id "CNTNAP3C--BX005040.4^ENST00000636699.1" ; transcript_name "CNTNAP3C-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
EXOC4--AL512452.1 HAVANA gene 1006 38283 . + . FI_gene_label "EXOC4^ENSG00000131558.15" ; ID "EXOC4--AL512452.1^EXOC4^ENSG00000131558.15" ; ccdsid "CCDS5829.1" ; exon_id "ENSE00003845393.1" ; exon_number 1 ; gene_id "EXOC4--AL512452.1^EXOC4^ENSG00000131558.15" ; gene_name EXOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155259.5" ; havana_transcript "OTTHUMT00000339182.2" ; hgnc_id "HGNC:30389" ; level 2 ; orig_coord_info "chr7,133253102,133253187,+" ; protein_id "ENSP00000253861.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXOC4--AL512452.1^ENST00000253861.5" ; transcript_name "EXOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
EXOC4--AL512452.1 HAVANA mRNA 1006 38283 . + . FI_gene_label "EXOC4^ENSG00000131558.15" ; ID "EXOC4--AL512452.1^ENST00000253861.5" ; Parent "EXOC4--AL512452.1^EXOC4^ENSG00000131558.15" ; ccdsid "CCDS5829.1" ; exon_id "ENSE00003845393.1" ; exon_number 1 ; gene_id "EXOC4--AL512452.1^EXOC4^ENSG00000131558.15" ; gene_name EXOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155259.5" ; havana_transcript "OTTHUMT00000339182.2" ; hgnc_id "HGNC:30389" ; level 2 ; orig_coord_info "chr7,133253102,133253187,+" ; protein_id "ENSP00000253861.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXOC4--AL512452.1^ENST00000253861.5" ; transcript_name "EXOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EXOC4--LINC00364 HAVANA gene 1006 38283 . + . FI_gene_label "EXOC4^ENSG00000131558.15" ; ID "EXOC4--LINC00364^EXOC4^ENSG00000131558.15" ; ccdsid "CCDS5829.1" ; exon_id "ENSE00003845393.1" ; exon_number 1 ; gene_id "EXOC4--LINC00364^EXOC4^ENSG00000131558.15" ; gene_name EXOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155259.5" ; havana_transcript "OTTHUMT00000339182.2" ; hgnc_id "HGNC:30389" ; level 2 ; orig_coord_info "chr7,133253102,133253187,+" ; protein_id "ENSP00000253861.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXOC4--LINC00364^ENST00000253861.5" ; transcript_name "EXOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
EXOC4--LINC00364 HAVANA mRNA 1006 38283 . + . FI_gene_label "EXOC4^ENSG00000131558.15" ; ID "EXOC4--LINC00364^ENST00000253861.5" ; Parent "EXOC4--LINC00364^EXOC4^ENSG00000131558.15" ; ccdsid "CCDS5829.1" ; exon_id "ENSE00003845393.1" ; exon_number 1 ; gene_id "EXOC4--LINC00364^EXOC4^ENSG00000131558.15" ; gene_name EXOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155259.5" ; havana_transcript "OTTHUMT00000339182.2" ; hgnc_id "HGNC:30389" ; level 2 ; orig_coord_info "chr7,133253102,133253187,+" ; protein_id "ENSP00000253861.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXOC4--LINC00364^ENST00000253861.5" ; transcript_name "EXOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LLPHP3--USP39 HAVANA gene 7642 23389 . + . FI_gene_label "USP39^ENSG00000168883.20" ; ID "LLPHP3--USP39^USP39^ENSG00000168883.20" ; ccdsid "CCDS33234.1" ; exon_id "ENSE00001893724.1" ; exon_number 1 ; gene_id "LLPHP3--USP39^USP39^ENSG00000168883.20" ; gene_name USP39 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153090.11" ; havana_transcript "OTTHUMT00000329892.2" ; hgnc_id "HGNC:20071" ; level 2 ; orig_coord_info "chr2,85616196,85616463,+" ; protein_id "ENSP00000312981.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LLPHP3--USP39^ENST00000323701.11" ; transcript_name "USP39-201" ; transcript_support_level 1 ; transcript_type protein_coding
LLPHP3--USP39 HAVANA mRNA 7642 23389 . + . FI_gene_label "USP39^ENSG00000168883.20" ; ID "LLPHP3--USP39^ENST00000323701.11" ; Parent "LLPHP3--USP39^USP39^ENSG00000168883.20" ; ccdsid "CCDS33234.1" ; exon_id "ENSE00001893724.1" ; exon_number 1 ; gene_id "LLPHP3--USP39^USP39^ENSG00000168883.20" ; gene_name USP39 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153090.11" ; havana_transcript "OTTHUMT00000329892.2" ; hgnc_id "HGNC:20071" ; level 2 ; orig_coord_info "chr2,85616196,85616463,+" ; protein_id "ENSP00000312981.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LLPHP3--USP39^ENST00000323701.11" ; transcript_name "USP39-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAT2A--C6orf62 HAVANA gene 1001 7032 . + . FI_gene_label "MAT2A^ENSG00000168906.13" ; ID "MAT2A--C6orf62^MAT2A^ENSG00000168906.13" ; ccdsid "CCDS1977.1" ; exon_id "ENSE00001155028.5" ; exon_number 1 ; gene_id "MAT2A--C6orf62^MAT2A^ENSG00000168906.13" ; gene_name MAT2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130174.7" ; havana_transcript "OTTHUMT00000252491.3" ; hgnc_id "HGNC:6904" ; level 2 ; orig_coord_info "chr2,85539288,85539378,+" ; protein_id "ENSP00000303147.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAT2A--C6orf62^ENST00000306434.8" ; transcript_name "MAT2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAT2A--C6orf62 HAVANA mRNA 1001 7032 . + . FI_gene_label "MAT2A^ENSG00000168906.13" ; ID "MAT2A--C6orf62^ENST00000306434.8" ; Parent "MAT2A--C6orf62^MAT2A^ENSG00000168906.13" ; ccdsid "CCDS1977.1" ; exon_id "ENSE00001155028.5" ; exon_number 1 ; gene_id "MAT2A--C6orf62^MAT2A^ENSG00000168906.13" ; gene_name MAT2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130174.7" ; havana_transcript "OTTHUMT00000252491.3" ; hgnc_id "HGNC:6904" ; level 2 ; orig_coord_info "chr2,85539288,85539378,+" ; protein_id "ENSP00000303147.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAT2A--C6orf62^ENST00000306434.8" ; transcript_name "MAT2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAT2A--C6orf62 HAVANA gene 10033 16093 . + . FI_gene_label "C6orf62^ENSG00000112308.13" ; ID "MAT2A--C6orf62^C6orf62^ENSG00000112308.13" ; exon_id "ENSE00001476264.2" ; exon_number 1 ; gene_id "MAT2A--C6orf62^C6orf62^ENSG00000112308.13" ; gene_name C6orf62 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014361.2" ; havana_transcript "OTTHUMT00000040019.1" ; hgnc_id "HGNC:20998" ; level 2 ; orig_coord_info "chr6,24719860,24719901,-" ; protein_id "ENSP00000367342.3" ; tag basic ; transcript_id "MAT2A--C6orf62^ENST00000378102.3" ; transcript_name "C6orf62-201" ; transcript_support_level 5 ; transcript_type protein_coding
MAT2A--C6orf62 HAVANA mRNA 10033 16093 . + . FI_gene_label "C6orf62^ENSG00000112308.13" ; ID "MAT2A--C6orf62^ENST00000378102.3" ; Parent "MAT2A--C6orf62^C6orf62^ENSG00000112308.13" ; exon_id "ENSE00001476264.2" ; exon_number 1 ; gene_id "MAT2A--C6orf62^C6orf62^ENSG00000112308.13" ; gene_name C6orf62 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014361.2" ; havana_transcript "OTTHUMT00000040019.1" ; hgnc_id "HGNC:20998" ; level 2 ; orig_coord_info "chr6,24719860,24719901,-" ; protein_id "ENSP00000367342.3" ; tag basic ; transcript_id "MAT2A--C6orf62^ENST00000378102.3" ; transcript_name "C6orf62-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MDH1--PAUPAR HAVANA gene 1355 13918 . + . FI_gene_label "MDH1^ENSG00000014641.21" ; ID "MDH1--PAUPAR^MDH1^ENSG00000014641.21" ; ccdsid "CCDS1874.1" ; exon_id "ENSE00003559734.2" ; exon_number 1 ; gene_id "MDH1--PAUPAR^MDH1^ENSG00000014641.21" ; gene_name MDH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129512.14" ; havana_transcript "OTTHUMT00000251687.2" ; hgnc_id "HGNC:6970" ; level 2 ; orig_coord_info "chr2,63589044,63589046,+" ; protein_id "ENSP00000233114.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MDH1--PAUPAR^ENST00000233114.13" ; transcript_name "MDH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MDH1--PAUPAR HAVANA mRNA 1355 13918 . + . FI_gene_label "MDH1^ENSG00000014641.21" ; ID "MDH1--PAUPAR^ENST00000233114.13" ; Parent "MDH1--PAUPAR^MDH1^ENSG00000014641.21" ; ccdsid "CCDS1874.1" ; exon_id "ENSE00003559734.2" ; exon_number 1 ; gene_id "MDH1--PAUPAR^MDH1^ENSG00000014641.21" ; gene_name MDH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129512.14" ; havana_transcript "OTTHUMT00000251687.2" ; hgnc_id "HGNC:6970" ; level 2 ; orig_coord_info "chr2,63589044,63589046,+" ; protein_id "ENSP00000233114.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MDH1--PAUPAR^ENST00000233114.13" ; transcript_name "MDH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPRL3--ZP2 HAVANA gene 1166 18849 . + . FI_gene_label "NPRL3^ENSG00000103148.17" ; ID "NPRL3--ZP2^NPRL3^ENSG00000103148.17" ; ccdsid "CCDS73794.1" ; exon_id "ENSE00003717971.1" ; exon_number 1 ; gene_id "NPRL3--ZP2^NPRL3^ENSG00000103148.17" ; gene_name NPRL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000047792.20" ; havana_transcript "OTTHUMT00000134300.4" ; hgnc_id "HGNC:14124" ; level 2 ; orig_coord_info "chr16,138150,138267,-" ; protein_id "ENSP00000382834.4" ; tag basic CCDS ; transcript_id "NPRL3--ZP2^ENST00000399953.7" ; transcript_name "NPRL3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPRL3--ZP2 HAVANA mRNA 1166 18849 . + . FI_gene_label "NPRL3^ENSG00000103148.17" ; ID "NPRL3--ZP2^ENST00000399953.7" ; Parent "NPRL3--ZP2^NPRL3^ENSG00000103148.17" ; ccdsid "CCDS73794.1" ; exon_id "ENSE00003717971.1" ; exon_number 1 ; gene_id "NPRL3--ZP2^NPRL3^ENSG00000103148.17" ; gene_name NPRL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000047792.20" ; havana_transcript "OTTHUMT00000134300.4" ; hgnc_id "HGNC:14124" ; level 2 ; orig_coord_info "chr16,138150,138267,-" ; protein_id "ENSP00000382834.4" ; tag basic CCDS ; transcript_id "NPRL3--ZP2^ENST00000399953.7" ; transcript_name "NPRL3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPRL3--ZP2 HAVANA gene 23380 36637 . + . FI_gene_label "ZP2^ENSG00000103310.11" ; ID "NPRL3--ZP2^ZP2^ENSG00000103310.11" ; ccdsid "CCDS10596.1" ; exon_id "ENSE00002681647.1" ; exon_number 2 ; gene_id "NPRL3--ZP2^ZP2^ENSG00000103310.11" ; gene_name ZP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090681.3" ; havana_transcript "OTTHUMT00000207365.3" ; hgnc_id "HGNC:13188" ; level 2 ; orig_coord_info "chr16,21211486,21211547,-" ; protein_id "ENSP00000460971.1" ; tag basic appris_principal_1 CCDS ; transcript_id "NPRL3--ZP2^ENST00000574002.1" ; transcript_name "ZP2-203" ; transcript_support_level 1 ; transcript_type protein_coding
NPRL3--ZP2 HAVANA mRNA 23380 36637 . + . FI_gene_label "ZP2^ENSG00000103310.11" ; ID "NPRL3--ZP2^ENST00000574002.1" ; Parent "NPRL3--ZP2^ZP2^ENSG00000103310.11" ; ccdsid "CCDS10596.1" ; exon_id "ENSE00002681647.1" ; exon_number 2 ; gene_id "NPRL3--ZP2^ZP2^ENSG00000103310.11" ; gene_name ZP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090681.3" ; havana_transcript "OTTHUMT00000207365.3" ; hgnc_id "HGNC:13188" ; level 2 ; orig_coord_info "chr16,21211486,21211547,-" ; protein_id "ENSP00000460971.1" ; tag basic appris_principal_1 CCDS ; transcript_id "NPRL3--ZP2^ENST00000574002.1" ; transcript_name "ZP2-203" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^ENST00000289272.3" ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^ENST00000378126.4" ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
RANBP2--SH3RF3 HAVANA gene 1001 33169 . + . FI_gene_label "RANBP2^ENSG00000153201.16" ; ID "RANBP2--SH3RF3^RANBP2^ENSG00000153201.16" ; ccdsid "CCDS2079.1" ; exon_id "ENSE00001427934.2" ; exon_number 1 ; gene_id "RANBP2--SH3RF3^RANBP2^ENSG00000153201.16" ; gene_name RANBP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130981.11" ; havana_transcript "OTTHUMT00000253594.2" ; hgnc_id "HGNC:9848" ; level 2 ; orig_coord_info "chr2,108719607,108719678,+" ; protein_id "ENSP00000283195.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RANBP2--SH3RF3^ENST00000283195.11" ; transcript_name "RANBP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RANBP2--SH3RF3 HAVANA mRNA 1001 33169 . + . FI_gene_label "RANBP2^ENSG00000153201.16" ; ID "RANBP2--SH3RF3^ENST00000283195.11" ; Parent "RANBP2--SH3RF3^RANBP2^ENSG00000153201.16" ; ccdsid "CCDS2079.1" ; exon_id "ENSE00001427934.2" ; exon_number 1 ; gene_id "RANBP2--SH3RF3^RANBP2^ENSG00000153201.16" ; gene_name RANBP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130981.11" ; havana_transcript "OTTHUMT00000253594.2" ; hgnc_id "HGNC:9848" ; level 2 ; orig_coord_info "chr2,108719607,108719678,+" ; protein_id "ENSP00000283195.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RANBP2--SH3RF3^ENST00000283195.11" ; transcript_name "RANBP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RANBP2--SH3RF3 HAVANA gene 36170 51117 . + . FI_gene_label "SH3RF3^ENSG00000172985.11" ; ID "RANBP2--SH3RF3^SH3RF3^ENSG00000172985.11" ; ccdsid "CCDS74557.1" ; exon_id "ENSE00001747131.2" ; exon_number 1 ; gene_id "RANBP2--SH3RF3^SH3RF3^ENSG00000172985.11" ; gene_name SH3RF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153439.7" ; havana_transcript "OTTHUMT00000331210.5" ; hgnc_id "HGNC:24699" ; level 2 ; orig_coord_info "chr2,109129541,109130113,+" ; protein_id "ENSP00000309186.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RANBP2--SH3RF3^ENST00000309415.8" ; transcript_name "SH3RF3-201" ; transcript_support_level 5 ; transcript_type protein_coding
RANBP2--SH3RF3 HAVANA mRNA 36170 51117 . + . FI_gene_label "SH3RF3^ENSG00000172985.11" ; ID "RANBP2--SH3RF3^ENST00000309415.8" ; Parent "RANBP2--SH3RF3^SH3RF3^ENSG00000172985.11" ; ccdsid "CCDS74557.1" ; exon_id "ENSE00001747131.2" ; exon_number 1 ; gene_id "RANBP2--SH3RF3^SH3RF3^ENSG00000172985.11" ; gene_name SH3RF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153439.7" ; havana_transcript "OTTHUMT00000331210.5" ; hgnc_id "HGNC:24699" ; level 2 ; orig_coord_info "chr2,109129541,109130113,+" ; protein_id "ENSP00000309186.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RANBP2--SH3RF3^ENST00000309415.8" ; transcript_name "SH3RF3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SERGEF--CYP27C1 HAVANA gene 1001 24730 . + . FI_gene_label "SERGEF^ENSG00000129158.11" ; ID "SERGEF--CYP27C1^SERGEF^ENSG00000129158.11" ; ccdsid "CCDS7828.1" ; exon_id "ENSE00001128900.6" ; exon_number 1 ; gene_id "SERGEF--CYP27C1^SERGEF^ENSG00000129158.11" ; gene_name SERGEF ; gene_type protein_coding ; havana_gene "OTTHUMG00000166420.3" ; havana_transcript "OTTHUMT00000389538.2" ; hgnc_id "HGNC:17499" ; level 2 ; orig_coord_info "chr11,18012951,18013010,-" ; protein_id "ENSP00000265965.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SERGEF--CYP27C1^ENST00000265965.10" ; transcript_name "SERGEF-201" ; transcript_support_level 1 ; transcript_type protein_coding
SERGEF--CYP27C1 HAVANA mRNA 1001 24730 . + . FI_gene_label "SERGEF^ENSG00000129158.11" ; ID "SERGEF--CYP27C1^ENST00000265965.10" ; Parent "SERGEF--CYP27C1^SERGEF^ENSG00000129158.11" ; ccdsid "CCDS7828.1" ; exon_id "ENSE00001128900.6" ; exon_number 1 ; gene_id "SERGEF--CYP27C1^SERGEF^ENSG00000129158.11" ; gene_name SERGEF ; gene_type protein_coding ; havana_gene "OTTHUMG00000166420.3" ; havana_transcript "OTTHUMT00000389538.2" ; hgnc_id "HGNC:17499" ; level 2 ; orig_coord_info "chr11,18012951,18013010,-" ; protein_id "ENSP00000265965.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SERGEF--CYP27C1^ENST00000265965.10" ; transcript_name "SERGEF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SERGEF--CYP27C1 HAVANA gene 29379 40270 . + . FI_gene_label "CYP27C1^ENSG00000186684.14" ; ID "SERGEF--CYP27C1^CYP27C1^ENSG00000186684.14" ; ccdsid "CCDS33285.1" ; exon_id "ENSE00001338192.1" ; exon_number 2 ; gene_id "SERGEF--CYP27C1^CYP27C1^ENSG00000186684.14" ; gene_name CYP27C1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153400.3" ; havana_transcript "OTTHUMT00000331046.1" ; hgnc_id "HGNC:33480" ; level 2 ; orig_coord_info "chr2,127203372,127203549,-" ; protein_id "ENSP00000334128.7" ; tag basic CCDS ; transcript_id "SERGEF--CYP27C1^ENST00000335247.11" ; transcript_name "CYP27C1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SERGEF--CYP27C1 HAVANA mRNA 29379 40270 . + . FI_gene_label "CYP27C1^ENSG00000186684.14" ; ID "SERGEF--CYP27C1^ENST00000335247.11" ; Parent "SERGEF--CYP27C1^CYP27C1^ENSG00000186684.14" ; ccdsid "CCDS33285.1" ; exon_id "ENSE00001338192.1" ; exon_number 2 ; gene_id "SERGEF--CYP27C1^CYP27C1^ENSG00000186684.14" ; gene_name CYP27C1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153400.3" ; havana_transcript "OTTHUMT00000331046.1" ; hgnc_id "HGNC:33480" ; level 2 ; orig_coord_info "chr2,127203372,127203549,-" ; protein_id "ENSP00000334128.7" ; tag basic CCDS ; transcript_id "SERGEF--CYP27C1^ENST00000335247.11" ; transcript_name "CYP27C1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SERGEF--WBP11P2 HAVANA gene 1001 24730 . + . FI_gene_label "SERGEF^ENSG00000129158.11" ; ID "SERGEF--WBP11P2^SERGEF^ENSG00000129158.11" ; ccdsid "CCDS7828.1" ; exon_id "ENSE00001128900.6" ; exon_number 1 ; gene_id "SERGEF--WBP11P2^SERGEF^ENSG00000129158.11" ; gene_name SERGEF ; gene_type protein_coding ; havana_gene "OTTHUMG00000166420.3" ; havana_transcript "OTTHUMT00000389538.2" ; hgnc_id "HGNC:17499" ; level 2 ; orig_coord_info "chr11,18012951,18013010,-" ; protein_id "ENSP00000265965.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SERGEF--WBP11P2^ENST00000265965.10" ; transcript_name "SERGEF-201" ; transcript_support_level 1 ; transcript_type protein_coding
SERGEF--WBP11P2 HAVANA mRNA 1001 24730 . + . FI_gene_label "SERGEF^ENSG00000129158.11" ; ID "SERGEF--WBP11P2^ENST00000265965.10" ; Parent "SERGEF--WBP11P2^SERGEF^ENSG00000129158.11" ; ccdsid "CCDS7828.1" ; exon_id "ENSE00001128900.6" ; exon_number 1 ; gene_id "SERGEF--WBP11P2^SERGEF^ENSG00000129158.11" ; gene_name SERGEF ; gene_type protein_coding ; havana_gene "OTTHUMG00000166420.3" ; havana_transcript "OTTHUMT00000389538.2" ; hgnc_id "HGNC:17499" ; level 2 ; orig_coord_info "chr11,18012951,18013010,-" ; protein_id "ENSP00000265965.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SERGEF--WBP11P2^ENST00000265965.10" ; transcript_name "SERGEF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC10A7--AC092435.4 HAVANA gene 1025 20935 . + . FI_gene_label "SLC10A7^ENSG00000120519.15" ; ID "SLC10A7--AC092435.4^SLC10A7^ENSG00000120519.15" ; ccdsid "CCDS34073.1" ; exon_id "ENSE00002045154.2" ; exon_number 1 ; gene_id "SLC10A7--AC092435.4^SLC10A7^ENSG00000120519.15" ; gene_name SLC10A7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161437.2" ; havana_transcript "OTTHUMT00000364912.1" ; hgnc_id "HGNC:23088" ; level 2 ; orig_coord_info "chr4,146521618,146521717,-" ; protein_id "ENSP00000334594.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC10A7--AC092435.4^ENST00000335472.12" ; transcript_name "SLC10A7-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC10A7--AC092435.4 HAVANA mRNA 1025 20935 . + . FI_gene_label "SLC10A7^ENSG00000120519.15" ; ID "SLC10A7--AC092435.4^ENST00000335472.12" ; Parent "SLC10A7--AC092435.4^SLC10A7^ENSG00000120519.15" ; ccdsid "CCDS34073.1" ; exon_id "ENSE00002045154.2" ; exon_number 1 ; gene_id "SLC10A7--AC092435.4^SLC10A7^ENSG00000120519.15" ; gene_name SLC10A7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161437.2" ; havana_transcript "OTTHUMT00000364912.1" ; hgnc_id "HGNC:23088" ; level 2 ; orig_coord_info "chr4,146521618,146521717,-" ; protein_id "ENSP00000334594.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC10A7--AC092435.4^ENST00000335472.12" ; transcript_name "SLC10A7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC10A7--AC097450.1 HAVANA gene 1025 20935 . + . FI_gene_label "SLC10A7^ENSG00000120519.15" ; ID "SLC10A7--AC097450.1^SLC10A7^ENSG00000120519.15" ; ccdsid "CCDS34073.1" ; exon_id "ENSE00002045154.2" ; exon_number 1 ; gene_id "SLC10A7--AC097450.1^SLC10A7^ENSG00000120519.15" ; gene_name SLC10A7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161437.2" ; havana_transcript "OTTHUMT00000364912.1" ; hgnc_id "HGNC:23088" ; level 2 ; orig_coord_info "chr4,146521618,146521717,-" ; protein_id "ENSP00000334594.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC10A7--AC097450.1^ENST00000335472.12" ; transcript_name "SLC10A7-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC10A7--AC097450.1 HAVANA mRNA 1025 20935 . + . FI_gene_label "SLC10A7^ENSG00000120519.15" ; ID "SLC10A7--AC097450.1^ENST00000335472.12" ; Parent "SLC10A7--AC097450.1^SLC10A7^ENSG00000120519.15" ; ccdsid "CCDS34073.1" ; exon_id "ENSE00002045154.2" ; exon_number 1 ; gene_id "SLC10A7--AC097450.1^SLC10A7^ENSG00000120519.15" ; gene_name SLC10A7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161437.2" ; havana_transcript "OTTHUMT00000364912.1" ; hgnc_id "HGNC:23088" ; level 2 ; orig_coord_info "chr4,146521618,146521717,-" ; protein_id "ENSP00000334594.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC10A7--AC097450.1^ENST00000335472.12" ; transcript_name "SLC10A7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNU13--LLPH HAVANA gene 4331 9276 . + . FI_gene_label "SNU13^ENSG00000100138.15" ; ID "SNU13--LLPH^SNU13^ENSG00000100138.15" ; ccdsid "CCDS14022.1" ; exon_id "ENSE00001388935.4" ; exon_number 1 ; gene_id "SNU13--LLPH^SNU13^ENSG00000100138.15" ; gene_name SNU13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151189.9" ; havana_transcript "OTTHUMT00000321683.2" ; hgnc_id "HGNC:7819" ; level 2 ; orig_coord_info "chr22,41682356,41682358,-" ; protein_id "ENSP00000215956.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000215956.10" ; transcript_name "SNU13-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNU13--LLPH HAVANA mRNA 4331 9276 . + . FI_gene_label "SNU13^ENSG00000100138.15" ; ID "SNU13--LLPH^ENST00000215956.10" ; Parent "SNU13--LLPH^SNU13^ENSG00000100138.15" ; ccdsid "CCDS14022.1" ; exon_id "ENSE00001388935.4" ; exon_number 1 ; gene_id "SNU13--LLPH^SNU13^ENSG00000100138.15" ; gene_name SNU13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151189.9" ; havana_transcript "OTTHUMT00000321683.2" ; hgnc_id "HGNC:7819" ; level 2 ; orig_coord_info "chr22,41682356,41682358,-" ; protein_id "ENSP00000215956.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000215956.10" ; transcript_name "SNU13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNU13--LLPH HAVANA gene 13051 23027 . + . FI_gene_label "LLPH^ENSG00000139233.7" ; ID "SNU13--LLPH^LLPH^ENSG00000139233.7" ; ccdsid "CCDS8974.1" ; exon_id "ENSE00003592110.1" ; exon_number 2 ; gene_id "SNU13--LLPH^LLPH^ENSG00000139233.7" ; gene_name LLPH ; gene_type protein_coding ; havana_gene "OTTHUMG00000168959.4" ; havana_transcript "OTTHUMT00000401752.4" ; hgnc_id "HGNC:28229" ; level 2 ; orig_coord_info "chr12,66128896,66129106,-" ; protein_id "ENSP00000266604.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000266604.7" ; transcript_name "LLPH-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNU13--LLPH HAVANA mRNA 13051 23027 . + . FI_gene_label "LLPH^ENSG00000139233.7" ; ID "SNU13--LLPH^ENST00000266604.7" ; Parent "SNU13--LLPH^LLPH^ENSG00000139233.7" ; ccdsid "CCDS8974.1" ; exon_id "ENSE00003592110.1" ; exon_number 2 ; gene_id "SNU13--LLPH^LLPH^ENSG00000139233.7" ; gene_name LLPH ; gene_type protein_coding ; havana_gene "OTTHUMG00000168959.4" ; havana_transcript "OTTHUMT00000401752.4" ; hgnc_id "HGNC:28229" ; level 2 ; orig_coord_info "chr12,66128896,66129106,-" ; protein_id "ENSP00000266604.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000266604.7" ; transcript_name "LLPH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STK33--DENND2B HAVANA gene 43454 77994 . + . FI_gene_label "DENND2B^ENSG00000166444.19" ; ID "STK33--DENND2B^DENND2B^ENSG00000166444.19" ; ccdsid "CCDS7791.1" ; exon_id "ENSE00003597340.1" ; exon_number 2 ; gene_id "STK33--DENND2B^DENND2B^ENSG00000166444.19" ; gene_name DENND2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000165835.4" ; havana_transcript "OTTHUMT00000386519.2" ; hgnc_id "HGNC:11350" ; level 2 ; orig_coord_info "chr11,8750621,8750700,-" ; protein_id "ENSP00000319678.6" ; tag basic MANE_Select CCDS ; transcript_id "STK33--DENND2B^ENST00000313726.11" ; transcript_name "DENND2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
STK33--DENND2B HAVANA mRNA 43454 77994 . + . FI_gene_label "DENND2B^ENSG00000166444.19" ; ID "STK33--DENND2B^ENST00000313726.11" ; Parent "STK33--DENND2B^DENND2B^ENSG00000166444.19" ; ccdsid "CCDS7791.1" ; exon_id "ENSE00003597340.1" ; exon_number 2 ; gene_id "STK33--DENND2B^DENND2B^ENSG00000166444.19" ; gene_name DENND2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000165835.4" ; havana_transcript "OTTHUMT00000386519.2" ; hgnc_id "HGNC:11350" ; level 2 ; orig_coord_info "chr11,8750621,8750700,-" ; protein_id "ENSP00000319678.6" ; tag basic MANE_Select CCDS ; transcript_id "STK33--DENND2B^ENST00000313726.11" ; transcript_name "DENND2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STK33--DENND2B HAVANA gene 1334 27477 . + . FI_gene_label "STK33^ENSG00000130413.15" ; ID "STK33--DENND2B^STK33^ENSG00000130413.15" ; ccdsid "CCDS7789.1" ; exon_id "ENSE00000988570.2" ; exon_number 3 ; gene_id "STK33--DENND2B^STK33^ENSG00000130413.15" ; gene_name STK33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140275.9" ; havana_transcript "OTTHUMT00000276816.1" ; hgnc_id "HGNC:14568" ; level 2 ; orig_coord_info "chr11,8474681,8474905,-" ; protein_id "ENSP00000320754.1" ; tag basic appris_principal_1 CCDS ; transcript_id "STK33--DENND2B^ENST00000315204.5" ; transcript_name "STK33-201" ; transcript_support_level 1 ; transcript_type protein_coding
STK33--DENND2B HAVANA mRNA 1334 27477 . + . FI_gene_label "STK33^ENSG00000130413.15" ; ID "STK33--DENND2B^ENST00000315204.5" ; Parent "STK33--DENND2B^STK33^ENSG00000130413.15" ; ccdsid "CCDS7789.1" ; exon_id "ENSE00000988570.2" ; exon_number 3 ; gene_id "STK33--DENND2B^STK33^ENSG00000130413.15" ; gene_name STK33 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140275.9" ; havana_transcript "OTTHUMT00000276816.1" ; hgnc_id "HGNC:14568" ; level 2 ; orig_coord_info "chr11,8474681,8474905,-" ; protein_id "ENSP00000320754.1" ; tag basic appris_principal_1 CCDS ; transcript_id "STK33--DENND2B^ENST00000315204.5" ; transcript_name "STK33-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TNFAIP8L3--CYP19A1 HAVANA gene 1001 5614 . + . FI_gene_label "TNFAIP8L3^ENSG00000183578.8" ; ID "TNFAIP8L3--CYP19A1^TNFAIP8L3^ENSG00000183578.8" ; ccdsid "CCDS32241.1" ; exon_id "ENSE00001486468.1" ; exon_number 1 ; gene_id "TNFAIP8L3--CYP19A1^TNFAIP8L3^ENSG00000183578.8" ; gene_name TNFAIP8L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172460.5" ; havana_transcript "OTTHUMT00000418661.1" ; hgnc_id "HGNC:20620" ; level 2 ; orig_coord_info "chr15,51105005,51105176,-" ; protein_id "ENSP00000328016.5" ; tag basic CCDS ; transcript_id "TNFAIP8L3--CYP19A1^ENST00000327536.5" ; transcript_name "TNFAIP8L3-201" ; transcript_support_level 1 ; transcript_type protein_coding
TNFAIP8L3--CYP19A1 HAVANA mRNA 1001 5614 . + . FI_gene_label "TNFAIP8L3^ENSG00000183578.8" ; ID "TNFAIP8L3--CYP19A1^ENST00000327536.5" ; Parent "TNFAIP8L3--CYP19A1^TNFAIP8L3^ENSG00000183578.8" ; ccdsid "CCDS32241.1" ; exon_id "ENSE00001486468.1" ; exon_number 1 ; gene_id "TNFAIP8L3--CYP19A1^TNFAIP8L3^ENSG00000183578.8" ; gene_name TNFAIP8L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172460.5" ; havana_transcript "OTTHUMT00000418661.1" ; hgnc_id "HGNC:20620" ; level 2 ; orig_coord_info "chr15,51105005,51105176,-" ; protein_id "ENSP00000328016.5" ; tag basic CCDS ; transcript_id "TNFAIP8L3--CYP19A1^ENST00000327536.5" ; transcript_name "TNFAIP8L3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TNFAIP8L3--CYP19A1 HAVANA gene 8620 32660 . + . FI_gene_label "CYP19A1^ENSG00000137869.15" ; ID "TNFAIP8L3--CYP19A1^CYP19A1^ENSG00000137869.15" ; ccdsid "CCDS10139.1" ; exon_id "ENSE00001621872.1" ; exon_number 2 ; gene_id "TNFAIP8L3--CYP19A1^CYP19A1^ENSG00000137869.15" ; gene_name CYP19A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131747.7" ; havana_transcript "OTTHUMT00000254669.2" ; hgnc_id "HGNC:2594" ; level 2 ; orig_coord_info "chr15,51242768,51242912,-" ; protein_id "ENSP00000379683.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TNFAIP8L3--CYP19A1^ENST00000396402.6" ; transcript_name "CYP19A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TNFAIP8L3--CYP19A1 HAVANA mRNA 8620 32660 . + . FI_gene_label "CYP19A1^ENSG00000137869.15" ; ID "TNFAIP8L3--CYP19A1^ENST00000396402.6" ; Parent "TNFAIP8L3--CYP19A1^CYP19A1^ENSG00000137869.15" ; ccdsid "CCDS10139.1" ; exon_id "ENSE00001621872.1" ; exon_number 2 ; gene_id "TNFAIP8L3--CYP19A1^CYP19A1^ENSG00000137869.15" ; gene_name CYP19A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131747.7" ; havana_transcript "OTTHUMT00000254669.2" ; hgnc_id "HGNC:2594" ; level 2 ; orig_coord_info "chr15,51242768,51242912,-" ; protein_id "ENSP00000379683.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TNFAIP8L3--CYP19A1^ENST00000396402.6" ; transcript_name "CYP19A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TNS1--ALK HAVANA gene 8232 56093 . + . FI_gene_label "TNS1^ENSG00000079308.19" ; ID "TNS1--ALK^TNS1^ENSG00000079308.19" ; ccdsid "CCDS2407.1" ; exon_id "ENSE00003622889.1" ; exon_number 6 ; gene_id "TNS1--ALK^TNS1^ENSG00000079308.19" ; gene_name TNS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133056.10" ; havana_transcript "OTTHUMT00000256672.2" ; hgnc_id "HGNC:11973" ; level 2 ; orig_coord_info "chr2,217897798,217897965,-" ; protein_id "ENSP00000171887.4" ; tag basic CCDS ; transcript_id "TNS1--ALK^ENST00000171887.8" ; transcript_name "TNS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TNS1--ALK HAVANA mRNA 8232 56093 . + . FI_gene_label "TNS1^ENSG00000079308.19" ; ID "TNS1--ALK^ENST00000171887.8" ; Parent "TNS1--ALK^TNS1^ENSG00000079308.19" ; ccdsid "CCDS2407.1" ; exon_id "ENSE00003622889.1" ; exon_number 6 ; gene_id "TNS1--ALK^TNS1^ENSG00000079308.19" ; gene_name TNS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133056.10" ; havana_transcript "OTTHUMT00000256672.2" ; hgnc_id "HGNC:11973" ; level 2 ; orig_coord_info "chr2,217897798,217897965,-" ; protein_id "ENSP00000171887.4" ; tag basic CCDS ; transcript_id "TNS1--ALK^ENST00000171887.8" ; transcript_name "TNS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TNS1--ALK HAVANA gene 59295 94299 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "TNS1--ALK^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "TNS1--ALK^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TNS1--ALK^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
TNS1--ALK HAVANA mRNA 59295 94299 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "TNS1--ALK^ENST00000389048.8" ; Parent "TNS1--ALK^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "TNS1--ALK^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TNS1--ALK^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WDPCP--SMARCAL1 HAVANA gene 5906 40374 . + . FI_gene_label "WDPCP^ENSG00000143951.16" ; ID "WDPCP--SMARCAL1^WDPCP^ENSG00000143951.16" ; ccdsid "CCDS42688.1" ; exon_id "ENSE00003841481.1" ; exon_number 1 ; gene_id "WDPCP--SMARCAL1^WDPCP^ENSG00000143951.16" ; gene_name WDPCP ; gene_type protein_coding ; havana_gene "OTTHUMG00000152566.10" ; havana_transcript "OTTHUMT00000326820.2" ; hgnc_id "HGNC:28027" ; level 2 ; orig_coord_info "chr2,63588197,63588271,-" ; protein_id "ENSP00000272321.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WDPCP--SMARCAL1^ENST00000272321.12" ; transcript_name "WDPCP-201" ; transcript_support_level 1 ; transcript_type protein_coding
WDPCP--SMARCAL1 HAVANA mRNA 5906 40374 . + . FI_gene_label "WDPCP^ENSG00000143951.16" ; ID "WDPCP--SMARCAL1^ENST00000272321.12" ; Parent "WDPCP--SMARCAL1^WDPCP^ENSG00000143951.16" ; ccdsid "CCDS42688.1" ; exon_id "ENSE00003841481.1" ; exon_number 1 ; gene_id "WDPCP--SMARCAL1^WDPCP^ENSG00000143951.16" ; gene_name WDPCP ; gene_type protein_coding ; havana_gene "OTTHUMG00000152566.10" ; havana_transcript "OTTHUMT00000326820.2" ; hgnc_id "HGNC:28027" ; level 2 ; orig_coord_info "chr2,63588197,63588271,-" ; protein_id "ENSP00000272321.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WDPCP--SMARCAL1^ENST00000272321.12" ; transcript_name "WDPCP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WDPCP--SMARCAL1 HAVANA gene 43445 65624 . + . FI_gene_label "SMARCAL1^ENSG00000138375.13" ; ID "WDPCP--SMARCAL1^SMARCAL1^ENSG00000138375.13" ; ccdsid "CCDS2403.1" ; exon_id "ENSE00001265367.3" ; exon_number 3 ; gene_id "WDPCP--SMARCAL1^SMARCAL1^ENSG00000138375.13" ; gene_name SMARCAL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133055.4" ; havana_transcript "OTTHUMT00000256671.3" ; hgnc_id "HGNC:11102" ; level 2 ; orig_coord_info "chr2,216414705,216415515,+" ; protein_id "ENSP00000349823.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WDPCP--SMARCAL1^ENST00000357276.9" ; transcript_name "SMARCAL1-201" ; transcript_support_level 2 ; transcript_type protein_coding
WDPCP--SMARCAL1 HAVANA mRNA 43445 65624 . + . FI_gene_label "SMARCAL1^ENSG00000138375.13" ; ID "WDPCP--SMARCAL1^ENST00000357276.9" ; Parent "WDPCP--SMARCAL1^SMARCAL1^ENSG00000138375.13" ; ccdsid "CCDS2403.1" ; exon_id "ENSE00001265367.3" ; exon_number 3 ; gene_id "WDPCP--SMARCAL1^SMARCAL1^ENSG00000138375.13" ; gene_name SMARCAL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133055.4" ; havana_transcript "OTTHUMT00000256671.3" ; hgnc_id "HGNC:11102" ; level 2 ; orig_coord_info "chr2,216414705,216415515,+" ; protein_id "ENSP00000349823.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WDPCP--SMARCAL1^ENST00000357276.9" ; transcript_name "SMARCAL1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZNF827--AC092435.4 HAVANA gene 1394 38008 . + . FI_gene_label "ZNF827^ENSG00000151612.18" ; ID "ZNF827--AC092435.4^ZNF827^ENSG00000151612.18" ; ccdsid "CCDS34072.1" ; exon_id "ENSE00003893855.1" ; exon_number 1 ; gene_id "ZNF827--AC092435.4^ZNF827^ENSG00000151612.18" ; gene_name ZNF827 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161362.10" ; havana_transcript "OTTHUMT00000364656.1" ; hgnc_id "HGNC:27193" ; level 2 ; orig_coord_info "chr4,145938365,145938407,-" ; protein_id "ENSP00000368761.4" ; tag basic CCDS ; transcript_id "ZNF827--AC092435.4^ENST00000379448.9" ; transcript_name "ZNF827-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZNF827--AC092435.4 HAVANA mRNA 1394 38008 . + . FI_gene_label "ZNF827^ENSG00000151612.18" ; ID "ZNF827--AC092435.4^ENST00000379448.9" ; Parent "ZNF827--AC092435.4^ZNF827^ENSG00000151612.18" ; ccdsid "CCDS34072.1" ; exon_id "ENSE00003893855.1" ; exon_number 1 ; gene_id "ZNF827--AC092435.4^ZNF827^ENSG00000151612.18" ; gene_name ZNF827 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161362.10" ; havana_transcript "OTTHUMT00000364656.1" ; hgnc_id "HGNC:27193" ; level 2 ; orig_coord_info "chr4,145938365,145938407,-" ; protein_id "ENSP00000368761.4" ; tag basic CCDS ; transcript_id "ZNF827--AC092435.4^ENST00000379448.9" ; transcript_name "ZNF827-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZNF827--AC097450.1 HAVANA gene 1394 38008 . + . FI_gene_label "ZNF827^ENSG00000151612.18" ; ID "ZNF827--AC097450.1^ZNF827^ENSG00000151612.18" ; ccdsid "CCDS34072.1" ; exon_id "ENSE00003893855.1" ; exon_number 1 ; gene_id "ZNF827--AC097450.1^ZNF827^ENSG00000151612.18" ; gene_name ZNF827 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161362.10" ; havana_transcript "OTTHUMT00000364656.1" ; hgnc_id "HGNC:27193" ; level 2 ; orig_coord_info "chr4,145938365,145938407,-" ; protein_id "ENSP00000368761.4" ; tag basic CCDS ; transcript_id "ZNF827--AC097450.1^ENST00000379448.9" ; transcript_name "ZNF827-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZNF827--AC097450.1 HAVANA mRNA 1394 38008 . + . FI_gene_label "ZNF827^ENSG00000151612.18" ; ID "ZNF827--AC097450.1^ENST00000379448.9" ; Parent "ZNF827--AC097450.1^ZNF827^ENSG00000151612.18" ; ccdsid "CCDS34072.1" ; exon_id "ENSE00003893855.1" ; exon_number 1 ; gene_id "ZNF827--AC097450.1^ZNF827^ENSG00000151612.18" ; gene_name ZNF827 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161362.10" ; havana_transcript "OTTHUMT00000364656.1" ; hgnc_id "HGNC:27193" ; level 2 ; orig_coord_info "chr4,145938365,145938407,-" ; protein_id "ENSP00000368761.4" ; tag basic CCDS ; transcript_id "ZNF827--AC097450.1^ENST00000379448.9" ; transcript_name "ZNF827-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AC068489.1--USP39 HAVANA gene 2120 3380 . + . FI_gene_label "AC068489.1^ENSG00000234446.3" ; ID "AC068489.1--USP39^AC068489.1^ENSG00000234446.3" ; exon_id "ENSE00001694416.1" ; exon_number 1 ; gene_id "AC068489.1--USP39^AC068489.1^ENSG00000234446.3" ; gene_name "AC068489.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154090.4" ; havana_transcript "OTTHUMT00000333848.2" ; level 2 ; orig_coord_info "chr2,221637543,221637597,+" ; transcript_id "AC068489.1--USP39^ENST00000453706.2" ; transcript_name "AC068489.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
AC068489.1--USP39 HAVANA RNA 2120 3380 . + . FI_gene_label "AC068489.1^ENSG00000234446.3" ; ID "AC068489.1--USP39^ENST00000453706.2" ; Parent "AC068489.1--USP39^AC068489.1^ENSG00000234446.3" ; exon_id "ENSE00001694416.1" ; exon_number 1 ; gene_id "AC068489.1--USP39^AC068489.1^ENSG00000234446.3" ; gene_name "AC068489.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154090.4" ; havana_transcript "OTTHUMT00000333848.2" ; level 2 ; orig_coord_info "chr2,221637543,221637597,+" ; transcript_id "AC068489.1--USP39^ENST00000453706.2" ; transcript_name "AC068489.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC103871.1--DMD HAVANA gene 1001 5812 . + . FI_gene_label "AC103871.1^ENSG00000287391.1" ; ID "AC103871.1--DMD^AC103871.1^ENSG00000287391.1" ; exon_id "ENSE00003875159.1" ; exon_number 1 ; gene_id "AC103871.1--DMD^AC103871.1^ENSG00000287391.1" ; gene_name "AC103871.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195869.1" ; havana_transcript "OTTHUMT00000529152.1" ; level 2 ; orig_coord_info "chr15,87638688,87638818,+" ; tag basic TAGENE ; transcript_id "AC103871.1--DMD^ENST00000670668.1" ; transcript_name "AC103871.1-201" ; transcript_type lncRNA
AC103871.1--DMD HAVANA RNA 1001 5812 . + . FI_gene_label "AC103871.1^ENSG00000287391.1" ; ID "AC103871.1--DMD^ENST00000670668.1" ; Parent "AC103871.1--DMD^AC103871.1^ENSG00000287391.1" ; exon_id "ENSE00003875159.1" ; exon_number 1 ; gene_id "AC103871.1--DMD^AC103871.1^ENSG00000287391.1" ; gene_name "AC103871.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195869.1" ; havana_transcript "OTTHUMT00000529152.1" ; level 2 ; orig_coord_info "chr15,87638688,87638818,+" ; tag basic TAGENE ; transcript_id "AC103871.1--DMD^ENST00000670668.1" ; transcript_name "AC103871.1-201" ; transcript_type lncRNA
L1 and L2 created:
AL135878.1--MOXD1 HAVANA gene 1001 7784 . + . FI_gene_label "AL135878.1^ENSG00000258028.3" ; ID "AL135878.1--MOXD1^AL135878.1^ENSG00000258028.3" ; exon_id "ENSE00002363599.1" ; exon_number 1 ; gene_id "AL135878.1--MOXD1^AL135878.1^ENSG00000258028.3" ; gene_name "AL135878.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000170370.4" ; havana_transcript "OTTHUMT00000408712.1" ; level 2 ; orig_coord_info "chr14,28936889,28936995,+" ; tag dotter_confirmed basic ; transcript_id "AL135878.1--MOXD1^ENST00000551227.1" ; transcript_name "AL135878.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
AL135878.1--MOXD1 HAVANA RNA 1001 7784 . + . FI_gene_label "AL135878.1^ENSG00000258028.3" ; ID "AL135878.1--MOXD1^ENST00000551227.1" ; Parent "AL135878.1--MOXD1^AL135878.1^ENSG00000258028.3" ; exon_id "ENSE00002363599.1" ; exon_number 1 ; gene_id "AL135878.1--MOXD1^AL135878.1^ENSG00000258028.3" ; gene_name "AL135878.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000170370.4" ; havana_transcript "OTTHUMT00000408712.1" ; level 2 ; orig_coord_info "chr14,28936889,28936995,+" ; tag dotter_confirmed basic ; transcript_id "AL135878.1--MOXD1^ENST00000551227.1" ; transcript_name "AL135878.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
AL162584.1--AL139317.5 HAVANA gene 1001 3400 . + . FI_gene_label "AL162584.1^ENSG00000227068.1" ; ID "AL162584.1--AL139317.5^AL162584.1^ENSG00000227068.1" ; exon_id "ENSE00001635333.1" ; exon_number 1 ; gene_id "AL162584.1--AL139317.5^AL162584.1^ENSG00000227068.1" ; gene_name "AL162584.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000020681.1" ; havana_transcript "OTTHUMT00000054082.1" ; level 2 ; orig_coord_info "chr9,125567579,125567993,+" ; tag basic ; transcript_id "AL162584.1--AL139317.5^ENST00000437097.1" ; transcript_name "AL162584.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
AL162584.1--AL139317.5 HAVANA RNA 1001 3400 . + . FI_gene_label "AL162584.1^ENSG00000227068.1" ; ID "AL162584.1--AL139317.5^ENST00000437097.1" ; Parent "AL162584.1--AL139317.5^AL162584.1^ENSG00000227068.1" ; exon_id "ENSE00001635333.1" ; exon_number 1 ; gene_id "AL162584.1--AL139317.5^AL162584.1^ENSG00000227068.1" ; gene_name "AL162584.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000020681.1" ; havana_transcript "OTTHUMT00000054082.1" ; level 2 ; orig_coord_info "chr9,125567579,125567993,+" ; tag basic ; transcript_id "AL162584.1--AL139317.5^ENST00000437097.1" ; transcript_name "AL162584.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AL162584.1--AL139317.5 HAVANA gene 6430 19112 . + . FI_gene_label "AL139317.5^ENSG00000285664.2" ; ID "AL162584.1--AL139317.5^AL139317.5^ENSG00000285664.2" ; exon_id "ENSE00003832535.1" ; exon_number 1 ; gene_id "AL162584.1--AL139317.5^AL139317.5^ENSG00000285664.2" ; gene_name "AL139317.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192708.2" ; havana_transcript "OTTHUMT00000498906.1" ; level 2 ; orig_coord_info "chr14,52791785,52791926,+" ; tag basic ; transcript_id "AL162584.1--AL139317.5^ENST00000649005.1" ; transcript_name "AL139317.5-204" ; transcript_type lncRNA
AL162584.1--AL139317.5 HAVANA RNA 6430 19112 . + . FI_gene_label "AL139317.5^ENSG00000285664.2" ; ID "AL162584.1--AL139317.5^ENST00000649005.1" ; Parent "AL162584.1--AL139317.5^AL139317.5^ENSG00000285664.2" ; exon_id "ENSE00003832535.1" ; exon_number 1 ; gene_id "AL162584.1--AL139317.5^AL139317.5^ENSG00000285664.2" ; gene_name "AL139317.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192708.2" ; havana_transcript "OTTHUMT00000498906.1" ; level 2 ; orig_coord_info "chr14,52791785,52791926,+" ; tag basic ; transcript_id "AL162584.1--AL139317.5^ENST00000649005.1" ; transcript_name "AL139317.5-204" ; transcript_type lncRNA
L1 and L2 created:
ARHGAP1--AC068051.1 HAVANA gene 16177 24040 . + . FI_gene_label "AC068051.1^ENSG00000197585.10" ; ID "ARHGAP1--AC068051.1^AC068051.1^ENSG00000197585.10" ; exon_id "ENSE00001732962.1" ; exon_number 1 ; gene_id "ARHGAP1--AC068051.1^AC068051.1^ENSG00000197585.10" ; gene_name "AC068051.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154823.3" ; havana_transcript "OTTHUMT00000337270.2" ; level 2 ; orig_coord_info "chr2,214684115,214684246,-" ; transcript_id "ARHGAP1--AC068051.1^ENST00000412896.5" ; transcript_name "AC068051.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
ARHGAP1--AC068051.1 HAVANA RNA 16177 24040 . + . FI_gene_label "AC068051.1^ENSG00000197585.10" ; ID "ARHGAP1--AC068051.1^ENST00000412896.5" ; Parent "ARHGAP1--AC068051.1^AC068051.1^ENSG00000197585.10" ; exon_id "ENSE00001732962.1" ; exon_number 1 ; gene_id "ARHGAP1--AC068051.1^AC068051.1^ENSG00000197585.10" ; gene_name "AC068051.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154823.3" ; havana_transcript "OTTHUMT00000337270.2" ; level 2 ; orig_coord_info "chr2,214684115,214684246,-" ; transcript_id "ARHGAP1--AC068051.1^ENST00000412896.5" ; transcript_name "AC068051.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
CASC15--GRIA4 HAVANA gene 18078 66802 . + . FI_gene_label "CASC15^ENSG00000272168.8" ; ID "CASC15--GRIA4^CASC15^ENSG00000272168.8" ; exon_id "ENSE00003696426.1" ; exon_number 1 ; gene_id "CASC15--GRIA4^CASC15^ENSG00000272168.8" ; gene_name CASC15 ; gene_type lncRNA ; havana_gene "OTTHUMG00000014345.88" ; havana_transcript "OTTHUMT00000470987.2" ; hgnc_id "HGNC:28245" ; level 2 ; orig_coord_info "chr6,21898720,21898784,+" ; tag basic ; transcript_id "CASC15--GRIA4^ENST00000444265.6" ; transcript_name "CASC15-201" ; transcript_support_level 1 ; transcript_type lncRNA
CASC15--GRIA4 HAVANA RNA 18078 66802 . + . FI_gene_label "CASC15^ENSG00000272168.8" ; ID "CASC15--GRIA4^ENST00000444265.6" ; Parent "CASC15--GRIA4^CASC15^ENSG00000272168.8" ; exon_id "ENSE00003696426.1" ; exon_number 1 ; gene_id "CASC15--GRIA4^CASC15^ENSG00000272168.8" ; gene_name CASC15 ; gene_type lncRNA ; havana_gene "OTTHUMG00000014345.88" ; havana_transcript "OTTHUMT00000470987.2" ; hgnc_id "HGNC:28245" ; level 2 ; orig_coord_info "chr6,21898720,21898784,+" ; tag basic ; transcript_id "CASC15--GRIA4^ENST00000444265.6" ; transcript_name "CASC15-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
CNTNAP3C--BX005040.4 HAVANA gene 13383 22900 . + . FI_gene_label "BX005040.4^ENSG00000283541.1" ; ID "CNTNAP3C--BX005040.4^BX005040.4^ENSG00000283541.1" ; exon_id "ENSE00003792886.1" ; exon_number 1 ; gene_id "CNTNAP3C--BX005040.4^BX005040.4^ENSG00000283541.1" ; gene_name "BX005040.4" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000191702.1" ; havana_transcript "OTTHUMT00000489610.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr9,61113783,61113954,-" ; tag basic ; transcript_id "CNTNAP3C--BX005040.4^ENST00000637145.1" ; transcript_name "BX005040.4-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
CNTNAP3C--BX005040.4 HAVANA RNA 13383 22900 . + . FI_gene_label "BX005040.4^ENSG00000283541.1" ; ID "CNTNAP3C--BX005040.4^ENST00000637145.1" ; Parent "CNTNAP3C--BX005040.4^BX005040.4^ENSG00000283541.1" ; exon_id "ENSE00003792886.1" ; exon_number 1 ; gene_id "CNTNAP3C--BX005040.4^BX005040.4^ENSG00000283541.1" ; gene_name "BX005040.4" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000191702.1" ; havana_transcript "OTTHUMT00000489610.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr9,61113783,61113954,-" ; tag basic ; transcript_id "CNTNAP3C--BX005040.4^ENST00000637145.1" ; transcript_name "BX005040.4-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
EXOC4--AL512452.1 HAVANA gene 42112 48212 . + . FI_gene_label "AL512452.1^ENSG00000287876.1" ; ID "EXOC4--AL512452.1^AL512452.1^ENSG00000287876.1" ; exon_id "ENSE00003855101.1" ; exon_number 1 ; gene_id "EXOC4--AL512452.1^AL512452.1^ENSG00000287876.1" ; gene_name "AL512452.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194719.1" ; havana_transcript "OTTHUMT00000521189.1" ; level 2 ; orig_coord_info "chr13,67787776,67787804,-" ; tag basic TAGENE ; transcript_id "EXOC4--AL512452.1^ENST00000662515.1" ; transcript_name "AL512452.1-201" ; transcript_type lncRNA
EXOC4--AL512452.1 HAVANA RNA 42112 48212 . + . FI_gene_label "AL512452.1^ENSG00000287876.1" ; ID "EXOC4--AL512452.1^ENST00000662515.1" ; Parent "EXOC4--AL512452.1^AL512452.1^ENSG00000287876.1" ; exon_id "ENSE00003855101.1" ; exon_number 1 ; gene_id "EXOC4--AL512452.1^AL512452.1^ENSG00000287876.1" ; gene_name "AL512452.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194719.1" ; havana_transcript "OTTHUMT00000521189.1" ; level 2 ; orig_coord_info "chr13,67787776,67787804,-" ; tag basic TAGENE ; transcript_id "EXOC4--AL512452.1^ENST00000662515.1" ; transcript_name "AL512452.1-201" ; transcript_type lncRNA
L1 and L2 created:
EXOC4--LINC00364 HAVANA gene 44454 47064 . + . FI_gene_label "LINC00364^ENSG00000230040.2" ; ID "EXOC4--LINC00364^LINC00364^ENSG00000230040.2" ; exon_id "ENSE00001611571.1" ; exon_number 1 ; gene_id "EXOC4--LINC00364^LINC00364^ENSG00000230040.2" ; gene_name LINC00364 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017041.2" ; havana_transcript "OTTHUMT00000045216.1" ; hgnc_id "HGNC:42686" ; level 2 ; orig_coord_info "chr13,67372387,67372470,+" ; transcript_id "EXOC4--LINC00364^ENST00000415120.1" ; transcript_name "LINC00364-201" ; transcript_support_level 3 ; transcript_type lncRNA
EXOC4--LINC00364 HAVANA RNA 44454 47064 . + . FI_gene_label "LINC00364^ENSG00000230040.2" ; ID "EXOC4--LINC00364^ENST00000415120.1" ; Parent "EXOC4--LINC00364^LINC00364^ENSG00000230040.2" ; exon_id "ENSE00001611571.1" ; exon_number 1 ; gene_id "EXOC4--LINC00364^LINC00364^ENSG00000230040.2" ; gene_name LINC00364 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017041.2" ; havana_transcript "OTTHUMT00000045216.1" ; hgnc_id "HGNC:42686" ; level 2 ; orig_coord_info "chr13,67372387,67372470,+" ; transcript_id "EXOC4--LINC00364^ENST00000415120.1" ; transcript_name "LINC00364-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
LLPHP3--USP39 HAVANA gene 1001 1390 . + . FI_gene_label "LLPHP3^ENSG00000233868.1" ; ID "LLPHP3--USP39^LLPHP3^ENSG00000233868.1" ; exon_id "ENSE00001664898.1" ; exon_number 1 ; gene_id "LLPHP3--USP39^LLPHP3^ENSG00000233868.1" ; gene_name LLPHP3 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000153408.1" ; havana_transcript "OTTHUMT00000331058.1" ; hgnc_id "HGNC:54775" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr2,221944223,221944612,+" ; tag basic ; transcript_id "LLPHP3--USP39^ENST00000417147.1" ; transcript_name "LLPHP3-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
LLPHP3--USP39 HAVANA RNA 1001 1390 . + . FI_gene_label "LLPHP3^ENSG00000233868.1" ; ID "LLPHP3--USP39^ENST00000417147.1" ; Parent "LLPHP3--USP39^LLPHP3^ENSG00000233868.1" ; exon_id "ENSE00001664898.1" ; exon_number 1 ; gene_id "LLPHP3--USP39^LLPHP3^ENSG00000233868.1" ; gene_name LLPHP3 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000153408.1" ; havana_transcript "OTTHUMT00000331058.1" ; hgnc_id "HGNC:54775" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr2,221944223,221944612,+" ; tag basic ; transcript_id "LLPHP3--USP39^ENST00000417147.1" ; transcript_name "LLPHP3-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
MDH1--PAUPAR HAVANA gene 19576 26684 . + . FI_gene_label "PAUPAR^ENSG00000281880.2" ; ID "MDH1--PAUPAR^PAUPAR^ENSG00000281880.2" ; exon_id "ENSE00002067491.1" ; exon_number 1 ; gene_id "MDH1--PAUPAR^PAUPAR^ENSG00000281880.2" ; gene_name PAUPAR ; gene_type lncRNA ; havana_gene "OTTHUMG00000189576.2" ; havana_transcript "OTTHUMT00000493869.2" ; hgnc_id "HGNC:49670" ; level 2 ; orig_coord_info "chr11,31816566,31816639,+" ; transcript_id "MDH1--PAUPAR^ENST00000506388.2" ; transcript_name "PAUPAR-201" ; transcript_support_level 1 ; transcript_type lncRNA
MDH1--PAUPAR HAVANA RNA 19576 26684 . + . FI_gene_label "PAUPAR^ENSG00000281880.2" ; ID "MDH1--PAUPAR^ENST00000506388.2" ; Parent "MDH1--PAUPAR^PAUPAR^ENSG00000281880.2" ; exon_id "ENSE00002067491.1" ; exon_number 1 ; gene_id "MDH1--PAUPAR^PAUPAR^ENSG00000281880.2" ; gene_name PAUPAR ; gene_type lncRNA ; havana_gene "OTTHUMG00000189576.2" ; havana_transcript "OTTHUMT00000493869.2" ; hgnc_id "HGNC:49670" ; level 2 ; orig_coord_info "chr11,31816566,31816639,+" ; transcript_id "MDH1--PAUPAR^ENST00000506388.2" ; transcript_name "PAUPAR-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
SERGEF--WBP11P2 HAVANA gene 27731 30555 . + . FI_gene_label "WBP11P2^ENSG00000226789.1" ; ID "SERGEF--WBP11P2^WBP11P2^ENSG00000226789.1" ; exon_id "ENSE00001689797.1" ; exon_number 1 ; gene_id "SERGEF--WBP11P2^WBP11P2^ENSG00000226789.1" ; gene_name WBP11P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000153396.1" ; havana_transcript "OTTHUMT00000331013.1" ; hgnc_id "HGNC:54786" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,127247258,127250082,+" ; tag pseudo_consens basic ; transcript_id "SERGEF--WBP11P2^ENST00000412499.1" ; transcript_name "WBP11P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
SERGEF--WBP11P2 HAVANA RNA 27731 30555 . + . FI_gene_label "WBP11P2^ENSG00000226789.1" ; ID "SERGEF--WBP11P2^ENST00000412499.1" ; Parent "SERGEF--WBP11P2^WBP11P2^ENSG00000226789.1" ; exon_id "ENSE00001689797.1" ; exon_number 1 ; gene_id "SERGEF--WBP11P2^WBP11P2^ENSG00000226789.1" ; gene_name WBP11P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000153396.1" ; havana_transcript "OTTHUMT00000331013.1" ; hgnc_id "HGNC:54786" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,127247258,127250082,+" ; tag pseudo_consens basic ; transcript_id "SERGEF--WBP11P2^ENST00000412499.1" ; transcript_name "WBP11P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
SLC10A7--AC092435.4 HAVANA gene 23942 28100 . + . FI_gene_label "AC092435.4^ENSG00000279376.1" ; ID "SLC10A7--AC092435.4^AC092435.4^ENSG00000279376.1" ; exon_id "ENSE00003758429.1" ; exon_number 1 ; gene_id "SLC10A7--AC092435.4^AC092435.4^ENSG00000279376.1" ; gene_name "AC092435.4" ; gene_type TEC ; havana_gene "OTTHUMG00000175959.1" ; havana_transcript "OTTHUMT00000431315.1" ; level 2 ; orig_coord_info "chr4,147025914,147030072,+" ; tag basic ; transcript_id "SLC10A7--AC092435.4^ENST00000623012.1" ; transcript_name "AC092435.4-201" ; transcript_support_level NA ; transcript_type TEC
SLC10A7--AC092435.4 HAVANA RNA 23942 28100 . + . FI_gene_label "AC092435.4^ENSG00000279376.1" ; ID "SLC10A7--AC092435.4^ENST00000623012.1" ; Parent "SLC10A7--AC092435.4^AC092435.4^ENSG00000279376.1" ; exon_id "ENSE00003758429.1" ; exon_number 1 ; gene_id "SLC10A7--AC092435.4^AC092435.4^ENSG00000279376.1" ; gene_name "AC092435.4" ; gene_type TEC ; havana_gene "OTTHUMG00000175959.1" ; havana_transcript "OTTHUMT00000431315.1" ; level 2 ; orig_coord_info "chr4,147025914,147030072,+" ; tag basic ; transcript_id "SLC10A7--AC092435.4^ENST00000623012.1" ; transcript_name "AC092435.4-201" ; transcript_support_level NA ; transcript_type TEC
L1 and L2 created:
SLC10A7--AC097450.1 HAVANA gene 23950 28133 . + . FI_gene_label "AC097450.1^ENSG00000286371.1" ; ID "SLC10A7--AC097450.1^AC097450.1^ENSG00000286371.1" ; exon_id "ENSE00003886711.1" ; exon_number 1 ; gene_id "SLC10A7--AC097450.1^AC097450.1^ENSG00000286371.1" ; gene_name "AC097450.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195461.1" ; havana_transcript "OTTHUMT00000526974.1" ; level 2 ; orig_coord_info "chr4,147060621,147060783,+" ; tag TAGENE ; transcript_id "SLC10A7--AC097450.1^ENST00000667105.1" ; transcript_name "AC097450.1-202" ; transcript_type lncRNA
SLC10A7--AC097450.1 HAVANA RNA 23950 28133 . + . FI_gene_label "AC097450.1^ENSG00000286371.1" ; ID "SLC10A7--AC097450.1^ENST00000667105.1" ; Parent "SLC10A7--AC097450.1^AC097450.1^ENSG00000286371.1" ; exon_id "ENSE00003886711.1" ; exon_number 1 ; gene_id "SLC10A7--AC097450.1^AC097450.1^ENSG00000286371.1" ; gene_name "AC097450.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195461.1" ; havana_transcript "OTTHUMT00000526974.1" ; level 2 ; orig_coord_info "chr4,147060621,147060783,+" ; tag TAGENE ; transcript_id "SLC10A7--AC097450.1^ENST00000667105.1" ; transcript_name "AC097450.1-202" ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
ZNF827--AC092435.4 HAVANA gene 44120 48278 . + . FI_gene_label "AC092435.4^ENSG00000279376.1" ; ID "ZNF827--AC092435.4^AC092435.4^ENSG00000279376.1" ; exon_id "ENSE00003758429.1" ; exon_number 1 ; gene_id "ZNF827--AC092435.4^AC092435.4^ENSG00000279376.1" ; gene_name "AC092435.4" ; gene_type TEC ; havana_gene "OTTHUMG00000175959.1" ; havana_transcript "OTTHUMT00000431315.1" ; level 2 ; orig_coord_info "chr4,147025914,147030072,+" ; tag basic ; transcript_id "ZNF827--AC092435.4^ENST00000623012.1" ; transcript_name "AC092435.4-201" ; transcript_support_level NA ; transcript_type TEC
ZNF827--AC092435.4 HAVANA RNA 44120 48278 . + . FI_gene_label "AC092435.4^ENSG00000279376.1" ; ID "ZNF827--AC092435.4^ENST00000623012.1" ; Parent "ZNF827--AC092435.4^AC092435.4^ENSG00000279376.1" ; exon_id "ENSE00003758429.1" ; exon_number 1 ; gene_id "ZNF827--AC092435.4^AC092435.4^ENSG00000279376.1" ; gene_name "AC092435.4" ; gene_type TEC ; havana_gene "OTTHUMG00000175959.1" ; havana_transcript "OTTHUMT00000431315.1" ; level 2 ; orig_coord_info "chr4,147025914,147030072,+" ; tag basic ; transcript_id "ZNF827--AC092435.4^ENST00000623012.1" ; transcript_name "AC092435.4-201" ; transcript_support_level NA ; transcript_type TEC
L1 and L2 created:
ZNF827--AC097450.1 HAVANA gene 44128 48311 . + . FI_gene_label "AC097450.1^ENSG00000286371.1" ; ID "ZNF827--AC097450.1^AC097450.1^ENSG00000286371.1" ; exon_id "ENSE00003886711.1" ; exon_number 1 ; gene_id "ZNF827--AC097450.1^AC097450.1^ENSG00000286371.1" ; gene_name "AC097450.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195461.1" ; havana_transcript "OTTHUMT00000526974.1" ; level 2 ; orig_coord_info "chr4,147060621,147060783,+" ; tag TAGENE ; transcript_id "ZNF827--AC097450.1^ENST00000667105.1" ; transcript_name "AC097450.1-202" ; transcript_type lncRNA
ZNF827--AC097450.1 HAVANA RNA 44128 48311 . + . FI_gene_label "AC097450.1^ENSG00000286371.1" ; ID "ZNF827--AC097450.1^ENST00000667105.1" ; Parent "ZNF827--AC097450.1^AC097450.1^ENSG00000286371.1" ; exon_id "ENSE00003886711.1" ; exon_number 1 ; gene_id "ZNF827--AC097450.1^AC097450.1^ENSG00000286371.1" ; gene_name "AC097450.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195461.1" ; havana_transcript "OTTHUMT00000526974.1" ; level 2 ; orig_coord_info "chr4,147060621,147060783,+" ; tag TAGENE ; transcript_id "ZNF827--AC097450.1^ENST00000667105.1" ; transcript_name "AC097450.1-202" ; transcript_type lncRNA
857 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1356 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 51 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed