Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/4da722eae6aa17961d7b1b9de6413e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/4da722eae6aa17961d7b1b9de6413e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/95c747b9c62f2c760ff2d192db37c6/659_b7Z-T1-TRNA-1_B23MHV2LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/252fa12b1b0502edb0800bc8263113/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_b7Z-T1-TRNA-1_B23MHV2LT4_1/abundance.h5
Successfully converted 659_b7Z-T1-TRNA-1_B23MHV2LT4_1/abundance.h5 to 659_b7Z-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv
  Sample: 659_b7Z-T1-TRNA-1_B23MHV2LT4_1
  Mean Fragment Length: 159.1 bp
  Median Fragment Length: 145.0 bp
  pct_mito_est_counts: 0.025%
  pct_ribo_est_counts: 1.245%
  pct_hk_est_counts: 0.491%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.049%
  pct_ribo_tpm: 3.573%
  pct_hk_tpm: 0.694%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.007%