Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/b32f1613cc5cc643875b9ddf6bf94e/659_1q-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/816b7f00be08c6e3abac90bb2e0d24/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/816b7f00be08c6e3abac90bb2e0d24/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_1q-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_1q-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_1q-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:27:50.290 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:27:50 GMT 2026] MarkDuplicates --INPUT 659_1q-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_1q-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_1q-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:27:50 GMT 2026] Executing as ?@nf-ed816b7f00be08c6e3abac90bb2e0d24-f7aac-rh7jk on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:27:50 MarkDuplicates Start of doWork freeMemory: 105492320; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:27:50 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:27:50 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:27:54 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,049,665
INFO 2026-06-08 08:27:54 MarkDuplicates Tracking 4831 as yet unmatched pairs. 2102 records in RAM.
INFO 2026-06-08 08:27:56 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,704,938
INFO 2026-06-08 08:27:56 MarkDuplicates Tracking 5786 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 08:27:58 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,387,928
INFO 2026-06-08 08:27:58 MarkDuplicates Tracking 8361 as yet unmatched pairs. 16 records in RAM.
INFO 2026-06-08 08:28:00 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:8,868,044
INFO 2026-06-08 08:28:00 MarkDuplicates Tracking 13648 as yet unmatched pairs. 2633 records in RAM.
INFO 2026-06-08 08:28:02 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:11,240,376
INFO 2026-06-08 08:28:02 MarkDuplicates Tracking 13997 as yet unmatched pairs. 201 records in RAM.
INFO 2026-06-08 08:28:04 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:15,567,964
INFO 2026-06-08 08:28:04 MarkDuplicates Tracking 16733 as yet unmatched pairs. 321 records in RAM.
INFO 2026-06-08 08:28:06 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:16,588,873
INFO 2026-06-08 08:28:06 MarkDuplicates Tracking 18922 as yet unmatched pairs. 182 records in RAM.
INFO 2026-06-08 08:28:08 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:19,106,576
INFO 2026-06-08 08:28:08 MarkDuplicates Tracking 21832 as yet unmatched pairs. 343 records in RAM.
INFO 2026-06-08 08:28:09 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:20,776,652
INFO 2026-06-08 08:28:09 MarkDuplicates Tracking 24570 as yet unmatched pairs. 458 records in RAM.
INFO 2026-06-08 08:28:11 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:21,865,326
INFO 2026-06-08 08:28:11 MarkDuplicates Tracking 27016 as yet unmatched pairs. 219 records in RAM.
INFO 2026-06-08 08:28:13 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:23,337,764
INFO 2026-06-08 08:28:13 MarkDuplicates Tracking 30649 as yet unmatched pairs. 1316 records in RAM.
INFO 2026-06-08 08:28:15 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:25,781,041
INFO 2026-06-08 08:28:15 MarkDuplicates Tracking 32402 as yet unmatched pairs. 651 records in RAM.
INFO 2026-06-08 08:28:16 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:26,779,501
INFO 2026-06-08 08:28:16 MarkDuplicates Tracking 34638 as yet unmatched pairs. 314 records in RAM.
INFO 2026-06-08 08:28:18 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:27,892,220
INFO 2026-06-08 08:28:18 MarkDuplicates Tracking 37461 as yet unmatched pairs. 360 records in RAM.
INFO 2026-06-08 08:28:20 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:30,995,139
INFO 2026-06-08 08:28:20 MarkDuplicates Tracking 39917 as yet unmatched pairs. 255 records in RAM.
INFO 2026-06-08 08:28:22 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:31,793,369
INFO 2026-06-08 08:28:22 MarkDuplicates Tracking 43178 as yet unmatched pairs. 606 records in RAM.
INFO 2026-06-08 08:28:24 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:32,770,378
INFO 2026-06-08 08:28:24 MarkDuplicates Tracking 45716 as yet unmatched pairs. 436 records in RAM.
INFO 2026-06-08 08:28:26 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,574
INFO 2026-06-08 08:28:26 MarkDuplicates Tracking 49472 as yet unmatched pairs. 1595 records in RAM.
INFO 2026-06-08 08:28:27 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:37,566,987
INFO 2026-06-08 08:28:27 MarkDuplicates Tracking 50607 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:28:28 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:39,850,239
INFO 2026-06-08 08:28:28 MarkDuplicates Tracking 53083 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-08 08:28:30 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:42,927,019
INFO 2026-06-08 08:28:30 MarkDuplicates Tracking 57376 as yet unmatched pairs. 1958 records in RAM.
INFO 2026-06-08 08:28:32 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:43,591,512
INFO 2026-06-08 08:28:32 MarkDuplicates Tracking 59595 as yet unmatched pairs. 1165 records in RAM.
INFO 2026-06-08 08:28:33 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:45,010,603
INFO 2026-06-08 08:28:33 MarkDuplicates Tracking 61256 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 08:28:35 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:46,718,076
INFO 2026-06-08 08:28:35 MarkDuplicates Tracking 64260 as yet unmatched pairs. 684 records in RAM.
INFO 2026-06-08 08:28:36 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:52,337,836
INFO 2026-06-08 08:28:36 MarkDuplicates Tracking 66275 as yet unmatched pairs. 150 records in RAM.
INFO 2026-06-08 08:28:38 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:58,576,197
INFO 2026-06-08 08:28:38 MarkDuplicates Tracking 71136 as yet unmatched pairs. 2436 records in RAM.
INFO 2026-06-08 08:28:40 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:64,866,877
INFO 2026-06-08 08:28:40 MarkDuplicates Tracking 72726 as yet unmatched pairs. 1336 records in RAM.
INFO 2026-06-08 08:28:42 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:81,942,969
INFO 2026-06-08 08:28:42 MarkDuplicates Tracking 73853 as yet unmatched pairs. 294 records in RAM.
INFO 2026-06-08 08:28:44 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:89,584,525
INFO 2026-06-08 08:28:44 MarkDuplicates Tracking 76384 as yet unmatched pairs. 310 records in RAM.
INFO 2026-06-08 08:28:46 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:94,926,899
INFO 2026-06-08 08:28:46 MarkDuplicates Tracking 78665 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-08 08:28:47 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:109,269,168
INFO 2026-06-08 08:28:47 MarkDuplicates Tracking 80907 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:28:49 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:109,693,212
INFO 2026-06-08 08:28:49 MarkDuplicates Tracking 91544 as yet unmatched pairs. 8493 records in RAM.
INFO 2026-06-08 08:28:50 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:112,698,317
INFO 2026-06-08 08:28:50 MarkDuplicates Tracking 85831 as yet unmatched pairs. 237 records in RAM.
INFO 2026-06-08 08:28:53 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:114,732,603
INFO 2026-06-08 08:28:53 MarkDuplicates Tracking 88960 as yet unmatched pairs. 881 records in RAM.
INFO 2026-06-08 08:28:55 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:119,916,092
INFO 2026-06-08 08:28:55 MarkDuplicates Tracking 91080 as yet unmatched pairs. 526 records in RAM.
INFO 2026-06-08 08:28:56 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:145,573,972
INFO 2026-06-08 08:28:56 MarkDuplicates Tracking 92468 as yet unmatched pairs. 252 records in RAM.
INFO 2026-06-08 08:28:58 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:147,611,825
INFO 2026-06-08 08:28:58 MarkDuplicates Tracking 94021 as yet unmatched pairs. 338 records in RAM.
INFO 2026-06-08 08:28:59 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:149,607,484
INFO 2026-06-08 08:28:59 MarkDuplicates Tracking 94859 as yet unmatched pairs. 81 records in RAM.
INFO 2026-06-08 08:29:00 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:150,266,476
INFO 2026-06-08 08:29:00 MarkDuplicates Tracking 97947 as yet unmatched pairs. 1246 records in RAM.
INFO 2026-06-08 08:29:02 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:151,266,332
INFO 2026-06-08 08:29:02 MarkDuplicates Tracking 99670 as yet unmatched pairs. 504 records in RAM.
INFO 2026-06-08 08:29:04 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:152,910,185
INFO 2026-06-08 08:29:04 MarkDuplicates Tracking 103959 as yet unmatched pairs. 2369 records in RAM.
INFO 2026-06-08 08:29:05 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:153,534,681
INFO 2026-06-08 08:29:05 MarkDuplicates Tracking 108101 as yet unmatched pairs. 3741 records in RAM.
INFO 2026-06-08 08:29:07 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,428
INFO 2026-06-08 08:29:07 MarkDuplicates Tracking 119943 as yet unmatched pairs. 13123 records in RAM.
INFO 2026-06-08 08:29:08 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:154,963,770
INFO 2026-06-08 08:29:08 MarkDuplicates Tracking 109704 as yet unmatched pairs. 589 records in RAM.
INFO 2026-06-08 08:29:10 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:155,521,099
INFO 2026-06-08 08:29:10 MarkDuplicates Tracking 111943 as yet unmatched pairs. 256 records in RAM.
INFO 2026-06-08 08:29:11 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,045
INFO 2026-06-08 08:29:11 MarkDuplicates Tracking 117155 as yet unmatched pairs. 2801 records in RAM.
INFO 2026-06-08 08:29:13 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:156,745,080
INFO 2026-06-08 08:29:13 MarkDuplicates Tracking 117659 as yet unmatched pairs. 568 records in RAM.
INFO 2026-06-08 08:29:14 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:161,001,050
INFO 2026-06-08 08:29:14 MarkDuplicates Tracking 121747 as yet unmatched pairs. 2253 records in RAM.
INFO 2026-06-08 08:29:16 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:165,682,152
INFO 2026-06-08 08:29:16 MarkDuplicates Tracking 122380 as yet unmatched pairs. 306 records in RAM.
INFO 2026-06-08 08:29:17 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,899
INFO 2026-06-08 08:29:17 MarkDuplicates Tracking 125325 as yet unmatched pairs. 865 records in RAM.
INFO 2026-06-08 08:29:19 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:180,015,864
INFO 2026-06-08 08:29:19 MarkDuplicates Tracking 127290 as yet unmatched pairs. 426 records in RAM.
INFO 2026-06-08 08:29:20 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:183,140,462
INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 129842 as yet unmatched pairs. 344 records in RAM.
INFO 2026-06-08 08:29:23 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:186,346,270
INFO 2026-06-08 08:29:23 MarkDuplicates Tracking 133162 as yet unmatched pairs. 1304 records in RAM.
INFO 2026-06-08 08:29:25 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:200,857,787
INFO 2026-06-08 08:29:25 MarkDuplicates Tracking 134603 as yet unmatched pairs. 517 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:202,729,015
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 138692 as yet unmatched pairs. 2079 records in RAM.
INFO 2026-06-08 08:29:29 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:204,112,920
INFO 2026-06-08 08:29:29 MarkDuplicates Tracking 139352 as yet unmatched pairs. 351 records in RAM.
INFO 2026-06-08 08:29:30 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:206,021,058
INFO 2026-06-08 08:29:30 MarkDuplicates Tracking 142612 as yet unmatched pairs. 1128 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:209,622,656
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 144340 as yet unmatched pairs. 376 records in RAM.
INFO 2026-06-08 08:29:34 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:220,010,974
INFO 2026-06-08 08:29:34 MarkDuplicates Tracking 146817 as yet unmatched pairs. 319 records in RAM.
INFO 2026-06-08 08:29:35 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:225,511,811
INFO 2026-06-08 08:29:35 MarkDuplicates Tracking 149093 as yet unmatched pairs. 185 records in RAM.
INFO 2026-06-08 08:29:37 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:228,316,827
INFO 2026-06-08 08:29:37 MarkDuplicates Tracking 151437 as yet unmatched pairs. 25 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:235,450,320
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 154296 as yet unmatched pairs. 171 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:244,859,301
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 157763 as yet unmatched pairs. 1273 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr2:8,747,890
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 159378 as yet unmatched pairs. 156928 records in RAM.
INFO 2026-06-08 08:29:44 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:15,536,467
INFO 2026-06-08 08:29:44 MarkDuplicates Tracking 162158 as yet unmatched pairs. 159664 records in RAM.
INFO 2026-06-08 08:29:46 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:20,203,959
INFO 2026-06-08 08:29:46 MarkDuplicates Tracking 173837 as yet unmatched pairs. 171303 records in RAM.
INFO 2026-06-08 08:29:48 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:20,645,363
INFO 2026-06-08 08:29:48 MarkDuplicates Tracking 166891 as yet unmatched pairs. 164323 records in RAM.
INFO 2026-06-08 08:29:50 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr2:26,254,245
INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 169951 as yet unmatched pairs. 167358 records in RAM.
INFO 2026-06-08 08:29:52 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:28,539,107
INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 171872 as yet unmatched pairs. 169255 records in RAM.
INFO 2026-06-08 08:29:53 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:32,415,609
INFO 2026-06-08 08:29:53 MarkDuplicates Tracking 175269 as yet unmatched pairs. 172593 records in RAM.
INFO 2026-06-08 08:29:55 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:29:55 MarkDuplicates Tracking 334202 as yet unmatched pairs. 160683 records in RAM.
INFO 2026-06-08 08:29:57 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 1002944 as yet unmatched pairs. 110880 records in RAM.
INFO 2026-06-08 08:29:59 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:29:59 MarkDuplicates Tracking 1312746 as yet unmatched pairs. 87203 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 1317030 as yet unmatched pairs. 86909 records in RAM.
INFO 2026-06-08 08:30:01 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:37,645,962
INFO 2026-06-08 08:30:01 MarkDuplicates Tracking 1369533 as yet unmatched pairs. 81555 records in RAM.
INFO 2026-06-08 08:30:03 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 2s. Last read position: chr2:43,224,325
INFO 2026-06-08 08:30:03 MarkDuplicates Tracking 1367902 as yet unmatched pairs. 79884 records in RAM.
INFO 2026-06-08 08:30:05 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:47,160,688
INFO 2026-06-08 08:30:05 MarkDuplicates Tracking 1365600 as yet unmatched pairs. 77532 records in RAM.
INFO 2026-06-08 08:30:06 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:54,655,912
INFO 2026-06-08 08:30:06 MarkDuplicates Tracking 1362228 as yet unmatched pairs. 74133 records in RAM.
INFO 2026-06-08 08:30:08 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:61,188,182
INFO 2026-06-08 08:30:08 MarkDuplicates Tracking 1360282 as yet unmatched pairs. 72155 records in RAM.
INFO 2026-06-08 08:30:10 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:65,205,499
INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 1357391 as yet unmatched pairs. 69221 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:71,076,638
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 1355627 as yet unmatched pairs. 67397 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:73,908,720
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 1354492 as yet unmatched pairs. 66212 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:75,652,519
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 1350397 as yet unmatched pairs. 62078 records in RAM.
INFO 2026-06-08 08:30:17 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:86,507,524
INFO 2026-06-08 08:30:17 MarkDuplicates Tracking 1348126 as yet unmatched pairs. 59763 records in RAM.
INFO 2026-06-08 08:30:19 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:96,278,576
INFO 2026-06-08 08:30:19 MarkDuplicates Tracking 1346095 as yet unmatched pairs. 57694 records in RAM.
INFO 2026-06-08 08:30:21 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:100,988,309
INFO 2026-06-08 08:30:21 MarkDuplicates Tracking 1343311 as yet unmatched pairs. 54863 records in RAM.
INFO 2026-06-08 08:30:22 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:106,425,993
INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 1340721 as yet unmatched pairs. 52226 records in RAM.
INFO 2026-06-08 08:30:24 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,519
INFO 2026-06-08 08:30:24 MarkDuplicates Tracking 1339729 as yet unmatched pairs. 51214 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:110,087,605
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 1341077 as yet unmatched pairs. 52530 records in RAM.
INFO 2026-06-08 08:30:26 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:112,388,684
INFO 2026-06-08 08:30:26 MarkDuplicates Tracking 1336855 as yet unmatched pairs. 48280 records in RAM.
INFO 2026-06-08 08:30:28 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:113,916,991
INFO 2026-06-08 08:30:28 MarkDuplicates Tracking 1336399 as yet unmatched pairs. 47789 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:130,075,066
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 1332114 as yet unmatched pairs. 43463 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:138,278,961
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 1329743 as yet unmatched pairs. 41023 records in RAM.
INFO 2026-06-08 08:30:32 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:159,320,321
INFO 2026-06-08 08:30:32 MarkDuplicates Tracking 1327708 as yet unmatched pairs. 38902 records in RAM.
INFO 2026-06-08 08:30:34 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:168,161,796
INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 1326260 as yet unmatched pairs. 37406 records in RAM.
INFO 2026-06-08 08:30:36 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:173,027,111
INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 1323030 as yet unmatched pairs. 34130 records in RAM.
INFO 2026-06-08 08:30:37 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:178,536,223
INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 1320841 as yet unmatched pairs. 31901 records in RAM.
INFO 2026-06-08 08:30:39 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:186,699,305
INFO 2026-06-08 08:30:39 MarkDuplicates Tracking 1318494 as yet unmatched pairs. 29487 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:196,770,007
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 1316424 as yet unmatched pairs. 27368 records in RAM.
INFO 2026-06-08 08:30:42 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:201,064,054
INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 1313669 as yet unmatched pairs. 24583 records in RAM.
INFO 2026-06-08 08:30:44 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:206,004,834
INFO 2026-06-08 08:30:44 MarkDuplicates Tracking 1311450 as yet unmatched pairs. 22334 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,081
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 1310262 as yet unmatched pairs. 21113 records in RAM.
INFO 2026-06-08 08:30:47 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:216,501,338
INFO 2026-06-08 08:30:47 MarkDuplicates Tracking 1306638 as yet unmatched pairs. 17462 records in RAM.
INFO 2026-06-08 08:30:49 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:218,580,594
INFO 2026-06-08 08:30:49 MarkDuplicates Tracking 1304435 as yet unmatched pairs. 15223 records in RAM.
INFO 2026-06-08 08:30:50 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:223,917,964
INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 1301652 as yet unmatched pairs. 12372 records in RAM.
INFO 2026-06-08 08:30:52 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:230,875,732
INFO 2026-06-08 08:30:52 MarkDuplicates Tracking 1299288 as yet unmatched pairs. 9960 records in RAM.
INFO 2026-06-08 08:30:54 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:233,164,285
INFO 2026-06-08 08:30:54 MarkDuplicates Tracking 1296779 as yet unmatched pairs. 7413 records in RAM.
INFO 2026-06-08 08:30:56 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:237,334,641
INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 1294500 as yet unmatched pairs. 5084 records in RAM.
INFO 2026-06-08 08:30:57 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:240,524,025
INFO 2026-06-08 08:30:57 MarkDuplicates Tracking 1291828 as yet unmatched pairs. 2366 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 2s. Last read position: chr3:4,800,561
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 1289210 as yet unmatched pairs. 77173 records in RAM.
INFO 2026-06-08 08:31:01 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:11,558,601
INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 1286902 as yet unmatched pairs. 74790 records in RAM.
INFO 2026-06-08 08:31:03 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:14,484,927
INFO 2026-06-08 08:31:03 MarkDuplicates Tracking 1284196 as yet unmatched pairs. 72038 records in RAM.
INFO 2026-06-08 08:31:05 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:25,755,097
INFO 2026-06-08 08:31:05 MarkDuplicates Tracking 1282052 as yet unmatched pairs. 69826 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:37,315,525
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 1279700 as yet unmatched pairs. 67421 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:40,488,102
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 1277041 as yet unmatched pairs. 64738 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:44,580,685
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 1274514 as yet unmatched pairs. 62171 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:47,122,470
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 1273067 as yet unmatched pairs. 60687 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:48,409,951
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 1270263 as yet unmatched pairs. 57853 records in RAM.
INFO 2026-06-08 08:31:14 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:49,012,615
INFO 2026-06-08 08:31:14 MarkDuplicates Tracking 1267728 as yet unmatched pairs. 55297 records in RAM.
INFO 2026-06-08 08:31:16 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:49,425,403
INFO 2026-06-08 08:31:16 MarkDuplicates Tracking 1264215 as yet unmatched pairs. 51747 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:50,270,136
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 1261783 as yet unmatched pairs. 49278 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:52,211,445
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 1260283 as yet unmatched pairs. 47755 records in RAM.
INFO 2026-06-08 08:31:20 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:53,186,199
INFO 2026-06-08 08:31:20 MarkDuplicates Tracking 1256786 as yet unmatched pairs. 44215 records in RAM.
INFO 2026-06-08 08:31:22 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:58,105,147
INFO 2026-06-08 08:31:22 MarkDuplicates Tracking 1256263 as yet unmatched pairs. 43642 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:62,003,420
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 1251571 as yet unmatched pairs. 38895 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:78,746,744
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 1249388 as yet unmatched pairs. 36642 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:101,676,790
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 1246846 as yet unmatched pairs. 34065 records in RAM.
INFO 2026-06-08 08:31:28 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:113,798,281
INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 1244666 as yet unmatched pairs. 31826 records in RAM.
INFO 2026-06-08 08:31:30 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:122,407,318
INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 1244860 as yet unmatched pairs. 31976 records in RAM.
INFO 2026-06-08 08:31:31 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:126,988,693
INFO 2026-06-08 08:31:31 MarkDuplicates Tracking 1239921 as yet unmatched pairs. 26992 records in RAM.
INFO 2026-06-08 08:31:34 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr3:129,394,042
INFO 2026-06-08 08:31:34 MarkDuplicates Tracking 1237025 as yet unmatched pairs. 24068 records in RAM.
INFO 2026-06-08 08:31:35 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:136,250,366
INFO 2026-06-08 08:31:35 MarkDuplicates Tracking 1234542 as yet unmatched pairs. 21553 records in RAM.
INFO 2026-06-08 08:31:37 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:143,972,342
INFO 2026-06-08 08:31:37 MarkDuplicates Tracking 1232160 as yet unmatched pairs. 19114 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:156,678,142
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 1229897 as yet unmatched pairs. 16799 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:169,975,613
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 1228333 as yet unmatched pairs. 15179 records in RAM.
INFO 2026-06-08 08:31:42 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:180,953,769
INFO 2026-06-08 08:31:42 MarkDuplicates Tracking 1226145 as yet unmatched pairs. 12954 records in RAM.
INFO 2026-06-08 08:31:44 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:184,316,187
INFO 2026-06-08 08:31:44 MarkDuplicates Tracking 1225116 as yet unmatched pairs. 11898 records in RAM.
INFO 2026-06-08 08:31:46 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr3:188,341,703
INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 1222655 as yet unmatched pairs. 9399 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:194,431,145
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 1218395 as yet unmatched pairs. 5094 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:195,779,172
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 1217003 as yet unmatched pairs. 3687 records in RAM.
INFO 2026-06-08 08:31:50 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:195,967,896
INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 1215184 as yet unmatched pairs. 1854 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr4:867,408
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 1212865 as yet unmatched pairs. 64627 records in RAM.
INFO 2026-06-08 08:31:54 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:1,744,531
INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 1226317 as yet unmatched pairs. 78052 records in RAM.
INFO 2026-06-08 08:31:55 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr4:1,745,004
INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 1210492 as yet unmatched pairs. 62212 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:1,801,497
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 1223948 as yet unmatched pairs. 75643 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:1,804,399
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 1221027 as yet unmatched pairs. 72692 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:1,805,453
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 1216033 as yet unmatched pairs. 67668 records in RAM.
INFO 2026-06-08 08:32:02 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:1,806,101
INFO 2026-06-08 08:32:02 MarkDuplicates Tracking 1208042 as yet unmatched pairs. 59661 records in RAM.
INFO 2026-06-08 08:32:04 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:1,806,643
INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 1208678 as yet unmatched pairs. 60290 records in RAM.
INFO 2026-06-08 08:32:05 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:2,884,519
INFO 2026-06-08 08:32:05 MarkDuplicates Tracking 1191958 as yet unmatched pairs. 43559 records in RAM.
INFO 2026-06-08 08:32:07 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:6,861,330
INFO 2026-06-08 08:32:07 MarkDuplicates Tracking 1188396 as yet unmatched pairs. 39962 records in RAM.
INFO 2026-06-08 08:32:08 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr4:13,603,651
INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 1185880 as yet unmatched pairs. 37395 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:37,847,113
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 1183476 as yet unmatched pairs. 34933 records in RAM.
INFO 2026-06-08 08:32:12 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 2s. Last read position: chr4:41,661,480
INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 1181134 as yet unmatched pairs. 32545 records in RAM.
INFO 2026-06-08 08:32:14 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:55,118,643
INFO 2026-06-08 08:32:14 MarkDuplicates Tracking 1178621 as yet unmatched pairs. 29995 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:70,689,649
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 1176326 as yet unmatched pairs. 27667 records in RAM.
INFO 2026-06-08 08:32:17 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:77,048,466
INFO 2026-06-08 08:32:17 MarkDuplicates Tracking 1174516 as yet unmatched pairs. 25822 records in RAM.
INFO 2026-06-08 08:32:19 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 2s. Last read position: chr4:84,688,086
INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 1171513 as yet unmatched pairs. 22790 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:87,178,540
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 1169189 as yet unmatched pairs. 20429 records in RAM.
INFO 2026-06-08 08:32:23 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:100,398,308
INFO 2026-06-08 08:32:23 MarkDuplicates Tracking 1166894 as yet unmatched pairs. 18087 records in RAM.
INFO 2026-06-08 08:32:25 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr4:108,622,599
INFO 2026-06-08 08:32:25 MarkDuplicates Tracking 1164468 as yet unmatched pairs. 15617 records in RAM.
INFO 2026-06-08 08:32:27 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:122,271,417
INFO 2026-06-08 08:32:27 MarkDuplicates Tracking 1162426 as yet unmatched pairs. 13543 records in RAM.
INFO 2026-06-08 08:32:28 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:139,725,685
INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 1160094 as yet unmatched pairs. 11165 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:150,872,736
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 1158925 as yet unmatched pairs. 9924 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:165,337,816
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 1156486 as yet unmatched pairs. 7435 records in RAM.
INFO 2026-06-08 08:32:33 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:174,493,257
INFO 2026-06-08 08:32:33 MarkDuplicates Tracking 1161110 as yet unmatched pairs. 12026 records in RAM.
INFO 2026-06-08 08:32:35 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:186,618,060
INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 1152327 as yet unmatched pairs. 3202 records in RAM.
INFO 2026-06-08 08:32:37 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr5:883,965
INFO 2026-06-08 08:32:37 MarkDuplicates Tracking 1148414 as yet unmatched pairs. 62451 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:10,263,133
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 1146235 as yet unmatched pairs. 60232 records in RAM.
INFO 2026-06-08 08:32:40 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:14,389,289
INFO 2026-06-08 08:32:40 MarkDuplicates Tracking 1145974 as yet unmatched pairs. 59936 records in RAM.
INFO 2026-06-08 08:32:42 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:31,422,787
INFO 2026-06-08 08:32:42 MarkDuplicates Tracking 1141236 as yet unmatched pairs. 55152 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:36,177,207
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 1138306 as yet unmatched pairs. 52187 records in RAM.
INFO 2026-06-08 08:32:45 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:40,832,532
INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 1136685 as yet unmatched pairs. 50549 records in RAM.
INFO 2026-06-08 08:32:47 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:54,518,305
INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 1133522 as yet unmatched pairs. 47336 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:66,044,220
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 1131648 as yet unmatched pairs. 45404 records in RAM.
INFO 2026-06-08 08:32:50 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:70,100,758
INFO 2026-06-08 08:32:50 MarkDuplicates Tracking 1129057 as yet unmatched pairs. 42785 records in RAM.
INFO 2026-06-08 08:32:52 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:74,635,220
INFO 2026-06-08 08:32:52 MarkDuplicates Tracking 1127429 as yet unmatched pairs. 41125 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:80,428,631
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 1125299 as yet unmatched pairs. 38950 records in RAM.
INFO 2026-06-08 08:32:56 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 2s. Last read position: chr5:95,540,719
INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 1122674 as yet unmatched pairs. 36261 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:109,344,806
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 1120188 as yet unmatched pairs. 33715 records in RAM.
INFO 2026-06-08 08:32:59 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:119,531,325
INFO 2026-06-08 08:32:59 MarkDuplicates Tracking 1117901 as yet unmatched pairs. 31361 records in RAM.
INFO 2026-06-08 08:33:01 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:132,866,982
INFO 2026-06-08 08:33:01 MarkDuplicates Tracking 1116181 as yet unmatched pairs. 29614 records in RAM.
INFO 2026-06-08 08:33:02 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:135,369,450
INFO 2026-06-08 08:33:02 MarkDuplicates Tracking 1113189 as yet unmatched pairs. 26599 records in RAM.
INFO 2026-06-08 08:33:04 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:138,924,667
INFO 2026-06-08 08:33:04 MarkDuplicates Tracking 1111502 as yet unmatched pairs. 24894 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:141,096,082
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 1108008 as yet unmatched pairs. 21347 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:141,863,475
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 1107081 as yet unmatched pairs. 20396 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:147,828,082
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 1108296 as yet unmatched pairs. 21572 records in RAM.
INFO 2026-06-08 08:33:11 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:150,404,681
INFO 2026-06-08 08:33:11 MarkDuplicates Tracking 1104694 as yet unmatched pairs. 17933 records in RAM.
INFO 2026-06-08 08:33:13 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:151,786,705
INFO 2026-06-08 08:33:13 MarkDuplicates Tracking 1099979 as yet unmatched pairs. 13181 records in RAM.
INFO 2026-06-08 08:33:15 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr5:163,441,879
INFO 2026-06-08 08:33:15 MarkDuplicates Tracking 1097246 as yet unmatched pairs. 10391 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:171,407,724
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 1103062 as yet unmatched pairs. 16175 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:177,536,532
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 1091386 as yet unmatched pairs. 4477 records in RAM.
INFO 2026-06-08 08:33:20 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,488
INFO 2026-06-08 08:33:20 MarkDuplicates Tracking 1089187 as yet unmatched pairs. 2264 records in RAM.
INFO 2026-06-08 08:33:22 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 2s. Last read position: chr6:3,154,190
INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 1085849 as yet unmatched pairs. 73792 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:7,580,126
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 1083951 as yet unmatched pairs. 71849 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:17,799,953
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 1080980 as yet unmatched pairs. 68837 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:26,156,559
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 1079757 as yet unmatched pairs. 67582 records in RAM.
INFO 2026-06-08 08:33:28 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:27,808,316
INFO 2026-06-08 08:33:28 MarkDuplicates Tracking 1076280 as yet unmatched pairs. 64082 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:30,346,711
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 1073441 as yet unmatched pairs. 61222 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:31,269,017
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 1073103 as yet unmatched pairs. 60863 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:31,647,774
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 1069148 as yet unmatched pairs. 56893 records in RAM.
INFO 2026-06-08 08:33:35 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,979
INFO 2026-06-08 08:33:35 MarkDuplicates Tracking 1067061 as yet unmatched pairs. 54784 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:32,853,514
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 1064284 as yet unmatched pairs. 51994 records in RAM.
INFO 2026-06-08 08:33:38 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:33,443,221
INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 1061627 as yet unmatched pairs. 49326 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:35,869,804
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 1059555 as yet unmatched pairs. 47218 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:41,930,754
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 1056428 as yet unmatched pairs. 44035 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:43,355,067
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 1053945 as yet unmatched pairs. 41523 records in RAM.
INFO 2026-06-08 08:33:44 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:44,253,045
INFO 2026-06-08 08:33:44 MarkDuplicates Tracking 1052838 as yet unmatched pairs. 40378 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:47,309,466
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 1050543 as yet unmatched pairs. 38063 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:56,530,021
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 1047215 as yet unmatched pairs. 34643 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:56,636,557
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 1045026 as yet unmatched pairs. 32433 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:75,205,784
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 1042053 as yet unmatched pairs. 29426 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 2s. Last read position: chr6:85,533,759
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 1040287 as yet unmatched pairs. 27623 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 2s. Last read position: chr6:99,401,606
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 1037664 as yet unmatched pairs. 24954 records in RAM.
INFO 2026-06-08 08:33:57 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:109,368,844
INFO 2026-06-08 08:33:57 MarkDuplicates Tracking 1040255 as yet unmatched pairs. 27511 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:115,972,499
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 1032497 as yet unmatched pairs. 19714 records in RAM.
INFO 2026-06-08 08:34:00 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:130,083,671
INFO 2026-06-08 08:34:00 MarkDuplicates Tracking 1030242 as yet unmatched pairs. 17409 records in RAM.
INFO 2026-06-08 08:34:02 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:138,092,012
INFO 2026-06-08 08:34:02 MarkDuplicates Tracking 1029317 as yet unmatched pairs. 16452 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:143,860,432
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 1025367 as yet unmatched pairs. 12461 records in RAM.
INFO 2026-06-08 08:34:05 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:151,352,272
INFO 2026-06-08 08:34:05 MarkDuplicates Tracking 1023033 as yet unmatched pairs. 10098 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:158,766,680
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 1020754 as yet unmatched pairs. 7765 records in RAM.
INFO 2026-06-08 08:34:08 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:158,784,699
INFO 2026-06-08 08:34:08 MarkDuplicates Tracking 1021528 as yet unmatched pairs. 8528 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:160,639,300
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 1015802 as yet unmatched pairs. 2791 records in RAM.
INFO 2026-06-08 08:34:11 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:170,546,114
INFO 2026-06-08 08:34:11 MarkDuplicates Tracking 1014202 as yet unmatched pairs. 1144 records in RAM.
INFO 2026-06-08 08:34:13 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 2s. Last read position: chr7:2,919,544
INFO 2026-06-08 08:34:13 MarkDuplicates Tracking 1010780 as yet unmatched pairs. 68450 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,762
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 1022686 as yet unmatched pairs. 80308 records in RAM.
INFO 2026-06-08 08:34:16 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,391
INFO 2026-06-08 08:34:16 MarkDuplicates Tracking 1012008 as yet unmatched pairs. 69614 records in RAM.
INFO 2026-06-08 08:34:18 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,286
INFO 2026-06-08 08:34:18 MarkDuplicates Tracking 1026365 as yet unmatched pairs. 83952 records in RAM.
INFO 2026-06-08 08:34:20 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr7:6,474,247
INFO 2026-06-08 08:34:20 MarkDuplicates Tracking 1000130 as yet unmatched pairs. 57690 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:17,339,724
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 999773 as yet unmatched pairs. 57302 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:27,095,717
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 995085 as yet unmatched pairs. 52552 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:40,063,022
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 992822 as yet unmatched pairs. 50255 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:44,884,501
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 990288 as yet unmatched pairs. 47701 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:56,061,763
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 987783 as yet unmatched pairs. 45163 records in RAM.
INFO 2026-06-08 08:34:30 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:73,022,283
INFO 2026-06-08 08:34:30 MarkDuplicates Tracking 985471 as yet unmatched pairs. 42826 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:74,317,547
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 983974 as yet unmatched pairs. 41307 records in RAM.
INFO 2026-06-08 08:34:33 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:75,422,337
INFO 2026-06-08 08:34:33 MarkDuplicates Tracking 983093 as yet unmatched pairs. 40406 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,065
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 988649 as yet unmatched pairs. 45948 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:76,990,264
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 977705 as yet unmatched pairs. 34986 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:91,973,910
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 977075 as yet unmatched pairs. 34311 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:93,999,210
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 973317 as yet unmatched pairs. 30544 records in RAM.
INFO 2026-06-08 08:34:40 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:99,049,573
INFO 2026-06-08 08:34:40 MarkDuplicates Tracking 970698 as yet unmatched pairs. 27886 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,352,569
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 968656 as yet unmatched pairs. 25816 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:102,170,454
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 965665 as yet unmatched pairs. 22790 records in RAM.
INFO 2026-06-08 08:34:46 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:102,660,078
INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 964584 as yet unmatched pairs. 21698 records in RAM.
INFO 2026-06-08 08:34:48 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr7:107,924,226
INFO 2026-06-08 08:34:48 MarkDuplicates Tracking 962586 as yet unmatched pairs. 19667 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:123,692,534
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 960163 as yet unmatched pairs. 17215 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 60s. Last read position: chr7:129,485,673
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 957178 as yet unmatched pairs. 14214 records in RAM.
INFO 2026-06-08 08:35:52 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr7:137,908,335
INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 956078 as yet unmatched pairs. 13076 records in RAM.
INFO 2026-06-08 08:35:53 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr7:140,459,710
INFO 2026-06-08 08:35:53 MarkDuplicates Tracking 952914 as yet unmatched pairs. 9896 records in RAM.
INFO 2026-06-08 08:35:55 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr7:143,388,319
INFO 2026-06-08 08:35:55 MarkDuplicates Tracking 950564 as yet unmatched pairs. 7522 records in RAM.
INFO 2026-06-08 08:35:57 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr7:149,012,214
INFO 2026-06-08 08:35:57 MarkDuplicates Tracking 948687 as yet unmatched pairs. 5639 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr7:152,154,409
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 945645 as yet unmatched pairs. 2568 records in RAM.
INFO 2026-06-08 08:36:00 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr7:158,945,602
INFO 2026-06-08 08:36:00 MarkDuplicates Tracking 943231 as yet unmatched pairs. 110 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 2s. Last read position: chr8:13,100,541
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 940611 as yet unmatched pairs. 63078 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr8:21,999,097
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 938447 as yet unmatched pairs. 60882 records in RAM.
INFO 2026-06-08 08:36:06 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr8:25,506,535
INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 935600 as yet unmatched pairs. 58009 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr8:30,504,334
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 935093 as yet unmatched pairs. 57448 records in RAM.
INFO 2026-06-08 08:36:10 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr8:38,326,833
INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 933429 as yet unmatched pairs. 55739 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr8:42,189,047
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 929450 as yet unmatched pairs. 51744 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr8:47,966,244
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 925932 as yet unmatched pairs. 48192 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:60,837,687
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 923374 as yet unmatched pairs. 45604 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:67,434,622
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 920996 as yet unmatched pairs. 43194 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:81,283,413
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 921639 as yet unmatched pairs. 43801 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:94,832,093
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 917142 as yet unmatched pairs. 39273 records in RAM.
INFO 2026-06-08 08:36:21 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:100,704,319
INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 925375 as yet unmatched pairs. 47462 records in RAM.
INFO 2026-06-08 08:36:23 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:100,721,403
INFO 2026-06-08 08:36:23 MarkDuplicates Tracking 915063 as yet unmatched pairs. 37135 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:106,447,982
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 909205 as yet unmatched pairs. 31230 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:123,255,826
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 906960 as yet unmatched pairs. 28941 records in RAM.
INFO 2026-06-08 08:36:28 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:130,124,027
INFO 2026-06-08 08:36:28 MarkDuplicates Tracking 904264 as yet unmatched pairs. 26213 records in RAM.
INFO 2026-06-08 08:36:30 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:140,664,925
INFO 2026-06-08 08:36:30 MarkDuplicates Tracking 902325 as yet unmatched pairs. 24238 records in RAM.
INFO 2026-06-08 08:36:32 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,726,862
INFO 2026-06-08 08:36:32 MarkDuplicates Tracking 898831 as yet unmatched pairs. 20708 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,702
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 897159 as yet unmatched pairs. 19032 records in RAM.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,874
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 896652 as yet unmatched pairs. 18524 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,550
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 896113 as yet unmatched pairs. 17981 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,236
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 894090 as yet unmatched pairs. 15947 records in RAM.
INFO 2026-06-08 08:36:37 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,114
INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 893111 as yet unmatched pairs. 14964 records in RAM.
INFO 2026-06-08 08:36:39 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,871,877
INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 892529 as yet unmatched pairs. 14369 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:143,920,700
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 889388 as yet unmatched pairs. 11214 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,926,723
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 885161 as yet unmatched pairs. 6966 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:144,097,240
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 881823 as yet unmatched pairs. 3598 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:144,841,684
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 878780 as yet unmatched pairs. 533 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr9:5,810,056
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 878934 as yet unmatched pairs. 55548 records in RAM.
INFO 2026-06-08 08:36:49 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:19,290,703
INFO 2026-06-08 08:36:49 MarkDuplicates Tracking 874445 as yet unmatched pairs. 51027 records in RAM.
INFO 2026-06-08 08:36:51 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:33,264,253
INFO 2026-06-08 08:36:51 MarkDuplicates Tracking 872302 as yet unmatched pairs. 48846 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr9:33,944,372
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 868770 as yet unmatched pairs. 45286 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:35,706,878
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 866265 as yet unmatched pairs. 42755 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:65,676,000
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 864014 as yet unmatched pairs. 40452 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:72,223,210
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 861818 as yet unmatched pairs. 38230 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:86,035,452
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 859572 as yet unmatched pairs. 35949 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:93,317,874
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 856903 as yet unmatched pairs. 33249 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:98,808,001
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 854476 as yet unmatched pairs. 30799 records in RAM.
INFO 2026-06-08 08:37:03 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:108,917,624
INFO 2026-06-08 08:37:03 MarkDuplicates Tracking 851951 as yet unmatched pairs. 28256 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:112,262,490
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 851004 as yet unmatched pairs. 27281 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:120,787,864
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 847440 as yet unmatched pairs. 23701 records in RAM.
INFO 2026-06-08 08:37:08 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:124,860,262
INFO 2026-06-08 08:37:08 MarkDuplicates Tracking 846058 as yet unmatched pairs. 22301 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:127,818,283
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 842298 as yet unmatched pairs. 18515 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:128,632,234
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 839428 as yet unmatched pairs. 15615 records in RAM.
INFO 2026-06-08 08:37:13 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:130,100,665
INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 836630 as yet unmatched pairs. 12809 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:132,281,538
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 834055 as yet unmatched pairs. 10216 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:134,050,453
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 831794 as yet unmatched pairs. 7934 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:136,496,169
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 828787 as yet unmatched pairs. 4905 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:137,241,813
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 827151 as yet unmatched pairs. 3257 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr10:3,113,447
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 823227 as yet unmatched pairs. 54510 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr10:6,242,283
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 820641 as yet unmatched pairs. 51903 records in RAM.
INFO 2026-06-08 08:37:25 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:15,684,055
INFO 2026-06-08 08:37:25 MarkDuplicates Tracking 818239 as yet unmatched pairs. 49477 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:27,131,918
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 816165 as yet unmatched pairs. 47370 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:32,028,505
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 818202 as yet unmatched pairs. 49391 records in RAM.
INFO 2026-06-08 08:37:30 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:32,923,635
INFO 2026-06-08 08:37:30 MarkDuplicates Tracking 815129 as yet unmatched pairs. 46305 records in RAM.
INFO 2026-06-08 08:37:32 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:43,387,222
INFO 2026-06-08 08:37:32 MarkDuplicates Tracking 809518 as yet unmatched pairs. 40651 records in RAM.
INFO 2026-06-08 08:37:34 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr10:46,388,448
INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 807195 as yet unmatched pairs. 38322 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:59,794,516
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 807154 as yet unmatched pairs. 38264 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:68,747,372
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 803761 as yet unmatched pairs. 34834 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:71,510,116
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 800268 as yet unmatched pairs. 31324 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:73,837,468
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 798693 as yet unmatched pairs. 29721 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:78,037,243
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 795885 as yet unmatched pairs. 26868 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:86,943,489
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 792695 as yet unmatched pairs. 23656 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:91,630,154
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 790687 as yet unmatched pairs. 21623 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:94,334,643
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 788043 as yet unmatched pairs. 18963 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:97,426,288
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 785666 as yet unmatched pairs. 16572 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:101,003,519
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 783491 as yet unmatched pairs. 14378 records in RAM.
INFO 2026-06-08 08:37:52 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:102,689,924
INFO 2026-06-08 08:37:52 MarkDuplicates Tracking 780680 as yet unmatched pairs. 11553 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr10:110,130,406
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 778443 as yet unmatched pairs. 9293 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:118,039,301
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 775850 as yet unmatched pairs. 6666 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:122,211,365
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 773954 as yet unmatched pairs. 4756 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:128,105,411
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 771539 as yet unmatched pairs. 2298 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 2s. Last read position: chr11:396,618
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 768842 as yet unmatched pairs. 94604 records in RAM.
INFO 2026-06-08 08:38:03 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:838,006
INFO 2026-06-08 08:38:03 MarkDuplicates Tracking 766160 as yet unmatched pairs. 91910 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:1,757,518
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 764977 as yet unmatched pairs. 90711 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:2,135,440
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 763592 as yet unmatched pairs. 89302 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:5,664,834
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 757795 as yet unmatched pairs. 83485 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:9,021,178
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 754768 as yet unmatched pairs. 80442 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:10,800,975
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 753134 as yet unmatched pairs. 78793 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:14,475,785
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 750319 as yet unmatched pairs. 75962 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:18,481,858
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 747670 as yet unmatched pairs. 73294 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:33,347,336
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 745088 as yet unmatched pairs. 70693 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr11:43,330,008
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 742758 as yet unmatched pairs. 68327 records in RAM.
INFO 2026-06-08 08:38:19 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:46,858,905
INFO 2026-06-08 08:38:19 MarkDuplicates Tracking 739976 as yet unmatched pairs. 65524 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:57,313,748
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 737944 as yet unmatched pairs. 63481 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:59,172,592
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 735445 as yet unmatched pairs. 60969 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:61,393,205
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 732627 as yet unmatched pairs. 58130 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:62,522,931
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 731836 as yet unmatched pairs. 57326 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:62,567,470
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 729053 as yet unmatched pairs. 54525 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:63,903,118
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 725637 as yet unmatched pairs. 51100 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:64,768,106
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 723716 as yet unmatched pairs. 49170 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 2s. Last read position: chr11:65,376,412
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 719699 as yet unmatched pairs. 45140 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 2s. Last read position: chr11:65,660,195
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 717805 as yet unmatched pairs. 43183 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:66,287,820
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 714570 as yet unmatched pairs. 39937 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:67,311,767
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 712119 as yet unmatched pairs. 37465 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:68,049,698
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 708733 as yet unmatched pairs. 34070 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:70,348,242
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 705775 as yet unmatched pairs. 31093 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:72,696,995
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 703320 as yet unmatched pairs. 28620 records in RAM.
INFO 2026-06-08 08:38:44 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:75,784,649
INFO 2026-06-08 08:38:44 MarkDuplicates Tracking 701052 as yet unmatched pairs. 26322 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:85,654,244
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 698282 as yet unmatched pairs. 23533 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:94,972,064
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 696107 as yet unmatched pairs. 21335 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:102,402,034
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 697292 as yet unmatched pairs. 22483 records in RAM.
INFO 2026-06-08 08:38:50 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:113,760,348
INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 690900 as yet unmatched pairs. 16072 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:118,407,069
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 690574 as yet unmatched pairs. 15722 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:119,049,777
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 686038 as yet unmatched pairs. 11160 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:120,424,308
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 683521 as yet unmatched pairs. 8632 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:124,669,415
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 680585 as yet unmatched pairs. 5676 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:128,970,521
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 678791 as yet unmatched pairs. 3866 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 2s. Last read position: chr11:134,177,412
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 675335 as yet unmatched pairs. 384 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 2s. Last read position: chr12:4,654,406
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 673317 as yet unmatched pairs. 81705 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:6,578,048
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 670844 as yet unmatched pairs. 79216 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:6,945,844
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 667847 as yet unmatched pairs. 76208 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:10,699,639
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 666155 as yet unmatched pairs. 74500 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:14,503,846
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 663637 as yet unmatched pairs. 71966 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:25,744,582
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 660658 as yet unmatched pairs. 68973 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:32,581,994
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 658215 as yet unmatched pairs. 66508 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:46,363,750
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 658184 as yet unmatched pairs. 66453 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:48,923,009
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 653236 as yet unmatched pairs. 61486 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,649
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 653104 as yet unmatched pairs. 61338 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:49,762,894
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 650167 as yet unmatched pairs. 58391 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr12:52,172,227
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 646394 as yet unmatched pairs. 54593 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:52,901,949
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 644390 as yet unmatched pairs. 52573 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:53,314,329
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 641168 as yet unmatched pairs. 49340 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 2s. Last read position: chr12:54,281,859
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 643797 as yet unmatched pairs. 51954 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:55,819,122
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 636784 as yet unmatched pairs. 44932 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:56,160,126
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 639879 as yet unmatched pairs. 48017 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:56,639,979
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 632428 as yet unmatched pairs. 40563 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:57,098,580
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 633588 as yet unmatched pairs. 41711 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:57,268,312
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 626533 as yet unmatched pairs. 34647 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:64,414,970
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 624913 as yet unmatched pairs. 33021 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:69,586,763
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 622167 as yet unmatched pairs. 30257 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:79,594,417
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 619164 as yet unmatched pairs. 27244 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:93,641,172
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 616579 as yet unmatched pairs. 24633 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:101,363,617
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 614347 as yet unmatched pairs. 22376 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:107,693,087
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 612269 as yet unmatched pairs. 20266 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:110,440,341
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 610291 as yet unmatched pairs. 18277 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:112,486,472
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 607090 as yet unmatched pairs. 15061 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:118,082,188
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 604209 as yet unmatched pairs. 12162 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:120,464,082
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 602258 as yet unmatched pairs. 10194 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:122,341,300
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 599648 as yet unmatched pairs. 7566 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 2s. Last read position: chr12:124,336,648
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 596865 as yet unmatched pairs. 4763 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:132,021,261
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 594422 as yet unmatched pairs. 2304 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr13:19,993,357
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 594096 as yet unmatched pairs. 28479 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr13:20,192,813
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 589367 as yet unmatched pairs. 23738 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr13:27,254,244
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 588263 as yet unmatched pairs. 22618 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr13:32,517,702
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 585403 as yet unmatched pairs. 19740 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr13:41,865,736
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 582556 as yet unmatched pairs. 16870 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr13:46,146,964
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 580791 as yet unmatched pairs. 15075 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr13:52,652,872
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 577567 as yet unmatched pairs. 11804 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr13:77,217,886
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 575279 as yet unmatched pairs. 9504 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr13:98,439,147
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 573117 as yet unmatched pairs. 7299 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr13:109,785,052
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 570244 as yet unmatched pairs. 4403 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr13:111,283,033
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 567631 as yet unmatched pairs. 1767 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 2s. Last read position: chr14:20,457,080
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 566213 as yet unmatched pairs. 46896 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr14:22,836,782
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 562878 as yet unmatched pairs. 43551 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr14:23,563,400
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 560341 as yet unmatched pairs. 41004 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:24,145,422
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 558822 as yet unmatched pairs. 39469 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr14:31,109,480
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 555220 as yet unmatched pairs. 35856 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:35,881,111
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 552420 as yet unmatched pairs. 33038 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr14:49,894,105
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 551592 as yet unmatched pairs. 32144 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr14:55,140,349
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 548060 as yet unmatched pairs. 28594 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:61,280,519
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 545483 as yet unmatched pairs. 26006 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr14:64,750,069
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 542873 as yet unmatched pairs. 23383 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:69,234,845
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 540220 as yet unmatched pairs. 20709 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr14:73,739,642
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 538021 as yet unmatched pairs. 18487 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:75,764,634
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 535181 as yet unmatched pairs. 15634 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:90,403,883
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 534402 as yet unmatched pairs. 14838 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:95,095,984
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 531316 as yet unmatched pairs. 11734 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:102,004,788
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 528240 as yet unmatched pairs. 8621 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 2s. Last read position: chr14:102,952,433
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 525517 as yet unmatched pairs. 5879 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:104,712,956
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 522413 as yet unmatched pairs. 2759 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr15:21,294,683
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 519581 as yet unmatched pairs. 43635 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr15:30,630,695
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 517610 as yet unmatched pairs. 41648 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr15:39,967,767
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 515707 as yet unmatched pairs. 39730 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr15:41,713,264
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 513386 as yet unmatched pairs. 37402 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr15:43,428,146
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 510578 as yet unmatched pairs. 34588 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr15:44,402,933
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 508558 as yet unmatched pairs. 32564 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr15:50,569,946
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 505989 as yet unmatched pairs. 29981 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr15:57,166,420
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 505694 as yet unmatched pairs. 29671 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr15:60,347,623
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 502060 as yet unmatched pairs. 26024 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr15:64,118,161
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 499348 as yet unmatched pairs. 23292 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr15:66,499,453
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 497130 as yet unmatched pairs. 21052 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr15:71,341,216
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 493842 as yet unmatched pairs. 17741 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr15:73,998,031
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 492321 as yet unmatched pairs. 16206 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:75,517,279
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 488702 as yet unmatched pairs. 12582 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:78,921,994
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 486920 as yet unmatched pairs. 10789 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:84,433,329
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 483516 as yet unmatched pairs. 7369 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:89,867,311
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 481533 as yet unmatched pairs. 5377 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:90,918,728
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 478745 as yet unmatched pairs. 2577 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 2s. Last read position: chr16:14,484
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 476194 as yet unmatched pairs. 69703 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr16:1,228,663
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 473186 as yet unmatched pairs. 66686 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:2,090,982
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 470247 as yet unmatched pairs. 63737 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:2,763,319
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 469612 as yet unmatched pairs. 63089 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:3,285,153
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 464953 as yet unmatched pairs. 58428 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr16:4,883,872
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 462391 as yet unmatched pairs. 55854 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:11,927,739
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 460521 as yet unmatched pairs. 53976 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:14,951,884
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 458317 as yet unmatched pairs. 51771 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr16:16,321,189
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 456703 as yet unmatched pairs. 50151 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:18,517,228
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 456430 as yet unmatched pairs. 49877 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr16:21,170,444
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 453856 as yet unmatched pairs. 47286 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:21,519,894
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 453249 as yet unmatched pairs. 46674 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:21,971,976
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 452182 as yet unmatched pairs. 45603 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,984
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 452933 as yet unmatched pairs. 46347 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:27,340,200
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 450540 as yet unmatched pairs. 43946 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:28,724,387
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 447444 as yet unmatched pairs. 40841 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:29,383,917
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 446238 as yet unmatched pairs. 39632 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:29,799,063
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 444764 as yet unmatched pairs. 38157 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:30,069,965
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 450965 as yet unmatched pairs. 44355 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:30,231,395
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 440241 as yet unmatched pairs. 33628 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:30,835,027
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 437909 as yet unmatched pairs. 31286 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:31,191,067
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 440396 as yet unmatched pairs. 33771 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:50,794,362
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 432913 as yet unmatched pairs. 26284 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:57,434,027
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 430645 as yet unmatched pairs. 24008 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:61,817,591
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 427918 as yet unmatched pairs. 21267 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:67,876,007
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 425342 as yet unmatched pairs. 18686 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr16:69,109,710
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 424236 as yet unmatched pairs. 17575 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:70,220,847
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 420204 as yet unmatched pairs. 13539 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:72,787,206
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 417810 as yet unmatched pairs. 11125 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:75,630,422
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 415354 as yet unmatched pairs. 8655 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:84,745,125
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 412499 as yet unmatched pairs. 5785 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:89,145,280
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 409673 as yet unmatched pairs. 2940 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:90,031,403
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 406984 as yet unmatched pairs. 221 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 2s. Last read position: chr17:1,365,010
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 409010 as yet unmatched pairs. 125223 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr17:2,300,101
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 401801 as yet unmatched pairs. 118012 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr17:4,558,044
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 399201 as yet unmatched pairs. 115406 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:5,410,788
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 396805 as yet unmatched pairs. 113003 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr17:7,311,923
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 394223 as yet unmatched pairs. 110419 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr17:7,513,668
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 392960 as yet unmatched pairs. 109152 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:7,887,037
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 389187 as yet unmatched pairs. 105373 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr17:13,003,521
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 386543 as yet unmatched pairs. 102723 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,610
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 384063 as yet unmatched pairs. 100241 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:17,813,687
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 381755 as yet unmatched pairs. 97925 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:19,958,132
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 379428 as yet unmatched pairs. 95593 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:28,634,859
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 377412 as yet unmatched pairs. 93568 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr17:29,491,783
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 374794 as yet unmatched pairs. 90946 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:31,937,495
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 372773 as yet unmatched pairs. 88921 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:35,820,181
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 375211 as yet unmatched pairs. 91354 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:37,561,496
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 367620 as yet unmatched pairs. 83762 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:38,721,930
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 365539 as yet unmatched pairs. 81674 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:39,509,727
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 363269 as yet unmatched pairs. 79403 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,910
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 361494 as yet unmatched pairs. 77626 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:40,363,178
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 357633 as yet unmatched pairs. 73760 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:41,502,403
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 359739 as yet unmatched pairs. 75851 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 2s. Last read position: chr17:41,527,833
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 353211 as yet unmatched pairs. 69319 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 130s. Last read position: chr17:41,619,609
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 365154 as yet unmatched pairs. 81258 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr17:41,621,626
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 368825 as yet unmatched pairs. 84923 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr17:41,624,100
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 357007 as yet unmatched pairs. 73099 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 1s. Last read position: chr17:41,763,084
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 342965 as yet unmatched pairs. 59052 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr17:42,563,250
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 338372 as yet unmatched pairs. 54452 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr17:44,075,845
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 335510 as yet unmatched pairs. 51574 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr17:45,150,101
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 333129 as yet unmatched pairs. 49186 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr17:47,658,613
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 331636 as yet unmatched pairs. 47690 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,076,664
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 328799 as yet unmatched pairs. 44847 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,453
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 326589 as yet unmatched pairs. 42626 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,745,818
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 322619 as yet unmatched pairs. 38650 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr17:58,495,089
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 320364 as yet unmatched pairs. 36372 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,686
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 319655 as yet unmatched pairs. 35661 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr17:62,627,734
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 315231 as yet unmatched pairs. 31221 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:64,503,454
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 314458 as yet unmatched pairs. 30439 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr17:67,948,285
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 310525 as yet unmatched pairs. 26483 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:73,233,227
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 307762 as yet unmatched pairs. 23712 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:75,495,324
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 305257 as yet unmatched pairs. 21200 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr17:75,757,428
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 303134 as yet unmatched pairs. 19074 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr17:76,270,242
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 300487 as yet unmatched pairs. 16409 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr17:78,701,677
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 296669 as yet unmatched pairs. 12583 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr17:81,192,314
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 293752 as yet unmatched pairs. 9655 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,987
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 298178 as yet unmatched pairs. 14074 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:81,890,795
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 288190 as yet unmatched pairs. 4076 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr17:82,439,645
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 285309 as yet unmatched pairs. 1187 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr18:6,462,116
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 282881 as yet unmatched pairs. 17643 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr18:12,325,220
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 280481 as yet unmatched pairs. 15233 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr18:26,038,570
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 278931 as yet unmatched pairs. 13668 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr18:36,126,737
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 276450 as yet unmatched pairs. 11183 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr18:49,482,324
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 273851 as yet unmatched pairs. 8569 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr18:57,607,487
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 270976 as yet unmatched pairs. 5689 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr18:62,574,655
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 268068 as yet unmatched pairs. 2778 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr19:307,108
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 265304 as yet unmatched pairs. 104479 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr19:1,032,676
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 263004 as yet unmatched pairs. 102173 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr19:1,440,177
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 262367 as yet unmatched pairs. 101533 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 2s. Last read position: chr19:2,235,762
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 256939 as yet unmatched pairs. 96096 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:3,983,264
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 254850 as yet unmatched pairs. 94000 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr19:5,214,664
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 250703 as yet unmatched pairs. 89848 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr19:6,422,340
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 248640 as yet unmatched pairs. 87783 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr19:8,333,746
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 244920 as yet unmatched pairs. 84062 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr19:10,258,504
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 242883 as yet unmatched pairs. 82020 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 2s. Last read position: chr19:10,830,236
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 239929 as yet unmatched pairs. 79058 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 2s. Last read position: chr19:11,447,129
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 236973 as yet unmatched pairs. 76102 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr19:12,792,696
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 235461 as yet unmatched pairs. 74583 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:14,097,780
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 232321 as yet unmatched pairs. 71439 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:15,174,118
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 229371 as yet unmatched pairs. 68483 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:15,265,365
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 227049 as yet unmatched pairs. 66159 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:16,385,103
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 223385 as yet unmatched pairs. 62488 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:17,808,008
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 220544 as yet unmatched pairs. 59642 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:18,759,922
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 217699 as yet unmatched pairs. 56795 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:20,196,981
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 214985 as yet unmatched pairs. 54077 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:34,352,796
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 212450 as yet unmatched pairs. 51533 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr19:35,267,698
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 210885 as yet unmatched pairs. 49968 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr19:37,153,460
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 207016 as yet unmatched pairs. 46095 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:38,721,562
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 205342 as yet unmatched pairs. 44416 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:39,415,030
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 201822 as yet unmatched pairs. 40894 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:40,240,094
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 200933 as yet unmatched pairs. 39999 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 2s. Last read position: chr19:41,506,453
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 196520 as yet unmatched pairs. 35586 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 2s. Last read position: chr19:42,273,969
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 194150 as yet unmatched pairs. 33215 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:43,627,686
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 191323 as yet unmatched pairs. 30379 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:45,396,180
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 189221 as yet unmatched pairs. 28276 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:46,608,873
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 186375 as yet unmatched pairs. 25426 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:48,383,148
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 183152 as yet unmatched pairs. 22200 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:49,181,424
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 180534 as yet unmatched pairs. 19581 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:49,669,091
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 177355 as yet unmatched pairs. 16397 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr19:50,280,273
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 174749 as yet unmatched pairs. 13781 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:52,222,158
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 172490 as yet unmatched pairs. 11518 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:54,171,870
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 169726 as yet unmatched pairs. 8753 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:55,305,560
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 166363 as yet unmatched pairs. 5381 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:57,682,072
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 163695 as yet unmatched pairs. 2711 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:58,551,908
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 161923 as yet unmatched pairs. 934 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr20:3,148,630
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 158724 as yet unmatched pairs. 35683 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr20:10,639,565
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 156514 as yet unmatched pairs. 33467 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr20:20,000,617
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 153788 as yet unmatched pairs. 30739 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr20:31,514,647
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 151452 as yet unmatched pairs. 28400 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr20:34,393,825
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 152062 as yet unmatched pairs. 29009 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr20:35,653,241
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 146004 as yet unmatched pairs. 22949 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr20:37,210,052
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 143771 as yet unmatched pairs. 20714 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr20:43,460,136
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 142037 as yet unmatched pairs. 18975 records in RAM.
INFO 2026-06-08 08:47:03 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr20:45,894,731
INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 139104 as yet unmatched pairs. 16040 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr20:49,270,573
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 136096 as yet unmatched pairs. 13029 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr20:54,162,746
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 133453 as yet unmatched pairs. 10382 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr20:59,030,351
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 132933 as yet unmatched pairs. 9857 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr20:62,387,632
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 129241 as yet unmatched pairs. 6159 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr20:63,733,334
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 124300 as yet unmatched pairs. 1218 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,855
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 122178 as yet unmatched pairs. 18684 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr21:8,442,005
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 121564 as yet unmatched pairs. 18062 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr21:26,089,956
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 120396 as yet unmatched pairs. 16888 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr21:33,426,897
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 117702 as yet unmatched pairs. 14191 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr21:36,338,804
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 114866 as yet unmatched pairs. 11352 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr21:39,345,213
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 112644 as yet unmatched pairs. 9126 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 2s. Last read position: chr21:43,421,607
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 109659 as yet unmatched pairs. 6135 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr21:45,986,969
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 107447 as yet unmatched pairs. 3923 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr21:46,459,134
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 104119 as yet unmatched pairs. 591 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr22:20,086,080
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 101789 as yet unmatched pairs. 36912 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 2s. Last read position: chr22:23,181,666
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 99347 as yet unmatched pairs. 34465 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr22:24,263,541
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 95861 as yet unmatched pairs. 30976 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr22:29,286,903
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 95759 as yet unmatched pairs. 30872 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr22:29,806,190
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 91331 as yet unmatched pairs. 26443 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr22:31,806,118
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 88534 as yet unmatched pairs. 23639 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr22:36,285,763
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 86905 as yet unmatched pairs. 22009 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr22:36,324,638
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 85822 as yet unmatched pairs. 20926 records in RAM.
INFO 2026-06-08 08:47:40 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr22:37,877,778
INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 81051 as yet unmatched pairs. 16154 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr22:38,866,535
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 77989 as yet unmatched pairs. 13087 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr22:41,177,142
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 76004 as yet unmatched pairs. 11101 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr22:42,213,342
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 73164 as yet unmatched pairs. 8259 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr22:45,922,618
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 70775 as yet unmatched pairs. 5870 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr22:50,284,597
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 69858 as yet unmatched pairs. 4948 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chrX:1,389,588
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 66732 as yet unmatched pairs. 63083 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chrX:10,567,163
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 63040 as yet unmatched pairs. 59389 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chrX:16,719,741
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 59504 as yet unmatched pairs. 55853 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chrX:21,967,279
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 57392 as yet unmatched pairs. 53734 records in RAM.
INFO 2026-06-08 08:47:56 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chrX:34,630,364
INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 56517 as yet unmatched pairs. 52859 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chrX:41,168,080
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 53879 as yet unmatched pairs. 50220 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 2s. Last read position: chrX:43,656,299
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 50151 as yet unmatched pairs. 46492 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chrX:47,059,011
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 47199 as yet unmatched pairs. 43539 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chrX:47,563,028
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 44792 as yet unmatched pairs. 41128 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chrX:48,901,991
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 42520 as yet unmatched pairs. 38856 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chrX:49,174,674
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 39860 as yet unmatched pairs. 36196 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chrX:53,216,185
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 37430 as yet unmatched pairs. 33765 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chrX:53,560,289
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 35057 as yet unmatched pairs. 31392 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chrX:54,470,124
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 31847 as yet unmatched pairs. 28182 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chrX:68,234,486
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 29451 as yet unmatched pairs. 25786 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chrX:72,130,893
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 27217 as yet unmatched pairs. 23552 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chrX:77,899,585
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 27182 as yet unmatched pairs. 23517 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chrX:101,625,355
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 22665 as yet unmatched pairs. 18999 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chrX:111,620,965
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 19919 as yet unmatched pairs. 16253 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chrX:124,071,249
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 17770 as yet unmatched pairs. 14104 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chrX:139,785,258
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 15356 as yet unmatched pairs. 11689 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chrX:153,700,564
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 12537 as yet unmatched pairs. 8868 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chrX:154,351,646
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 11735 as yet unmatched pairs. 8066 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chrX:154,364,924
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 8791 as yet unmatched pairs. 5120 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chrX:155,071,504
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 4020 as yet unmatched pairs. 349 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 2s. Last read position: GL000220.1:116,836
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 1646 as yet unmatched pairs. 64 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,429
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 284 as yet unmatched pairs. 274 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 633527483 records. 0 pairs never matched.
INFO 2026-06-08 08:49:22 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141600; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:49:22 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:49:27 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:49:27 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1366
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,848
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1967
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,196
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1190
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,333
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1400
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,015
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1497
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,047
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,685
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1162
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,068
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1210
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,941
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,334
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1241
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,137
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1468
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,556
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1168
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,122
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1283
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,615
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 2034
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,194
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,474
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1408
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,545
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,957
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1224
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,911
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,927
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,145
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder Large duplicate set. size = 1058
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,531
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,947
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder Large duplicate set. size = 1242
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,526
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder Large duplicate set. size = 1082
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,274
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,267
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,482
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder Large duplicate set. size = 1099
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,104
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder Large duplicate set. size = 1442
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,520
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,916
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder Large duplicate set. size = 1109
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,414
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,996
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder Large duplicate set. size = 2076
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,259
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,079
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder Large duplicate set. size = 1950
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,699
INFO 2026-06-08 08:49:56 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 08:49:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,692
INFO 2026-06-08 08:49:56 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 08:49:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,889
INFO 2026-06-08 08:49:59 OpticalDuplicateFinder Large duplicate set. size = 1207
INFO 2026-06-08 08:49:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,962
INFO 2026-06-08 08:50:07 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 08:50:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,664
INFO 2026-06-08 08:50:07 OpticalDuplicateFinder Large duplicate set. size = 1220
INFO 2026-06-08 08:50:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,844
INFO 2026-06-08 08:50:16 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 08:50:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,148
INFO 2026-06-08 08:50:16 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-08 08:50:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,893
INFO 2026-06-08 08:50:16 OpticalDuplicateFinder Large duplicate set. size = 1066
INFO 2026-06-08 08:50:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,233
INFO 2026-06-08 08:50:23 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 08:50:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,664
INFO 2026-06-08 08:50:23 OpticalDuplicateFinder Large duplicate set. size = 1350
INFO 2026-06-08 08:50:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,536
INFO 2026-06-08 08:50:23 OpticalDuplicateFinder Large duplicate set. size = 1251
INFO 2026-06-08 08:50:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,630
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,638
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder Large duplicate set. size = 1173
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,095
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,694
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,034
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder Large duplicate set. size = 1126
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,009
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder Large duplicate set. size = 1375
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,823
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder Large duplicate set. size = 1406
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,926
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder Large duplicate set. size = 1099
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,020
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder Large duplicate set. size = 1523
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,810
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 08:50:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,474
INFO 2026-06-08 08:50:25 OpticalDuplicateFinder Large duplicate set. size = 1625
INFO 2026-06-08 08:50:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,405
INFO 2026-06-08 08:50:25 OpticalDuplicateFinder Large duplicate set. size = 1523
INFO 2026-06-08 08:50:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,637
INFO 2026-06-08 08:50:25 OpticalDuplicateFinder Large duplicate set. size = 2368
INFO 2026-06-08 08:50:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,845
INFO 2026-06-08 08:50:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,366
INFO 2026-06-08 08:50:25 OpticalDuplicateFinder Large duplicate set. size = 1194
INFO 2026-06-08 08:50:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,709
INFO 2026-06-08 08:50:55 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:50:55 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:52:00 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:52:01 MarkDuplicates After generateDuplicateIndexes freeMemory: 203935544; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:52:01 MarkDuplicates Marking 269465034 records as duplicates.
INFO 2026-06-08 08:52:01 MarkDuplicates Found 12933638 optical duplicate clusters.
INFO 2026-06-08 08:52:01 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:52:18 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:21,865,326
INFO 2026-06-08 08:52:33 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 14s. Last read position: chr1:39,850,239
INFO 2026-06-08 08:52:48 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:47s. Time for last 10,000,000: 15s. Last read position: chr1:94,926,899
INFO 2026-06-08 08:53:03 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:02s. Time for last 10,000,000: 15s. Last read position: chr1:151,266,332
INFO 2026-06-08 08:53:18 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:17s. Time for last 10,000,000: 15s. Last read position: chr1:171,557,899
INFO 2026-06-08 08:53:34 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:33s. Time for last 10,000,000: 15s. Last read position: chr1:225,511,811
INFO 2026-06-08 08:53:49 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:48s. Time for last 10,000,000: 15s. Last read position: chr2:32,415,609
INFO 2026-06-08 08:54:04 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:02s. Time for last 10,000,000: 14s. Last read position: chr2:65,205,499
INFO 2026-06-08 08:54:19 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:17s. Time for last 10,000,000: 15s. Last read position: chr2:112,388,684
INFO 2026-06-08 08:54:34 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:33s. Time for last 10,000,000: 15s. Last read position: chr2:201,064,054
INFO 2026-06-08 08:54:49 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:48s. Time for last 10,000,000: 15s. Last read position: chr3:4,800,561
INFO 2026-06-08 08:55:04 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:03s. Time for last 10,000,000: 15s. Last read position: chr3:49,425,403
INFO 2026-06-08 08:55:19 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:18s. Time for last 10,000,000: 15s. Last read position: chr3:126,988,693
INFO 2026-06-08 08:55:34 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:33s. Time for last 10,000,000: 15s. Last read position: chr3:195,779,172
INFO 2026-06-08 08:55:49 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:48s. Time for last 10,000,000: 14s. Last read position: chr4:2,884,519
INFO 2026-06-08 08:56:04 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:03s. Time for last 10,000,000: 15s. Last read position: chr4:100,398,308
INFO 2026-06-08 08:56:19 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:18s. Time for last 10,000,000: 15s. Last read position: chr5:14,389,289
INFO 2026-06-08 08:56:35 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:34s. Time for last 10,000,000: 15s. Last read position: chr5:109,344,806
INFO 2026-06-08 08:56:50 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:49s. Time for last 10,000,000: 15s. Last read position: chr5:163,441,879
INFO 2026-06-08 08:57:05 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:04s. Time for last 10,000,000: 15s. Last read position: chr6:31,269,017
INFO 2026-06-08 08:57:20 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:19s. Time for last 10,000,000: 15s. Last read position: chr6:56,530,021
INFO 2026-06-08 08:57:35 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:34s. Time for last 10,000,000: 15s. Last read position: chr6:151,352,272
INFO 2026-06-08 08:57:50 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:49s. Time for last 10,000,000: 14s. Last read position: chr7:17,339,724
INFO 2026-06-08 08:58:05 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:04s. Time for last 10,000,000: 14s. Last read position: chr7:91,973,910
INFO 2026-06-08 08:58:20 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:19s. Time for last 10,000,000: 15s. Last read position: chr7:140,459,710
INFO 2026-06-08 08:58:35 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:34s. Time for last 10,000,000: 14s. Last read position: chr8:42,189,047
INFO 2026-06-08 08:58:50 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:49s. Time for last 10,000,000: 15s. Last read position: chr8:130,124,027
INFO 2026-06-08 08:59:04 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:03s. Time for last 10,000,000: 14s. Last read position: chr8:143,926,723
INFO 2026-06-08 08:59:19 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:18s. Time for last 10,000,000: 14s. Last read position: chr9:86,035,452
INFO 2026-06-08 08:59:34 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:33s. Time for last 10,000,000: 15s. Last read position: chr9:132,281,538
INFO 2026-06-08 08:59:49 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:48s. Time for last 10,000,000: 15s. Last read position: chr10:43,387,222
INFO 2026-06-08 09:00:04 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:03s. Time for last 10,000,000: 14s. Last read position: chr10:97,426,288
INFO 2026-06-08 09:00:19 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:18s. Time for last 10,000,000: 14s. Last read position: chr11:2,135,440
INFO 2026-06-08 09:00:34 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:33s. Time for last 10,000,000: 14s. Last read position: chr11:59,172,592
INFO 2026-06-08 09:00:49 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:48s. Time for last 10,000,000: 14s. Last read position: chr11:68,049,698
INFO 2026-06-08 09:01:04 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:03s. Time for last 10,000,000: 15s. Last read position: chr11:120,424,308
INFO 2026-06-08 09:01:20 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:18s. Time for last 10,000,000: 15s. Last read position: chr12:32,581,994
INFO 2026-06-08 09:01:35 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:34s. Time for last 10,000,000: 15s. Last read position: chr12:56,160,126
INFO 2026-06-08 09:01:50 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:09:49s. Time for last 10,000,000: 15s. Last read position: chr12:110,440,341
INFO 2026-06-08 09:02:05 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:03s. Time for last 10,000,000: 14s. Last read position: chr13:32,517,702
INFO 2026-06-08 09:02:20 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 15s. Last read position: chr14:23,563,400
INFO 2026-06-08 09:02:35 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:34s. Time for last 10,000,000: 15s. Last read position: chr14:75,764,634
INFO 2026-06-08 09:02:50 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:10:49s. Time for last 10,000,000: 14s. Last read position: chr15:43,428,146
INFO 2026-06-08 09:03:05 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:04s. Time for last 10,000,000: 15s. Last read position: chr15:78,921,994
INFO 2026-06-08 09:03:20 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:19s. Time for last 10,000,000: 14s. Last read position: chr16:11,927,739
INFO 2026-06-08 09:03:35 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:33s. Time for last 10,000,000: 14s. Last read position: chr16:29,383,917
INFO 2026-06-08 09:03:50 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:11:49s. Time for last 10,000,000: 15s. Last read position: chr16:69,109,710
INFO 2026-06-08 09:04:06 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:05s. Time for last 10,000,000: 15s. Last read position: chr17:5,410,788
INFO 2026-06-08 09:04:20 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:19s. Time for last 10,000,000: 14s. Last read position: chr17:31,937,495
INFO 2026-06-08 09:04:35 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:34s. Time for last 10,000,000: 14s. Last read position: chr17:41,621,626
INFO 2026-06-08 09:04:50 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:12:49s. Time for last 10,000,000: 14s. Last read position: chr17:58,495,089
INFO 2026-06-08 09:05:05 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:04s. Time for last 10,000,000: 14s. Last read position: chr17:81,192,314
INFO 2026-06-08 09:05:20 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:19s. Time for last 10,000,000: 14s. Last read position: chr18:62,574,655
INFO 2026-06-08 09:05:35 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:33s. Time for last 10,000,000: 14s. Last read position: chr19:10,830,236
INFO 2026-06-08 09:05:49 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:13:48s. Time for last 10,000,000: 14s. Last read position: chr19:34,352,796
INFO 2026-06-08 09:06:04 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:03s. Time for last 10,000,000: 14s. Last read position: chr19:46,608,873
INFO 2026-06-08 09:06:19 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:18s. Time for last 10,000,000: 15s. Last read position: chr20:3,148,630
INFO 2026-06-08 09:06:34 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:33s. Time for last 10,000,000: 14s. Last read position: chr20:54,162,746
INFO 2026-06-08 09:06:49 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:14:48s. Time for last 10,000,000: 14s. Last read position: chr21:43,421,607
INFO 2026-06-08 09:07:04 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:03s. Time for last 10,000,000: 14s. Last read position: chr22:36,324,638
INFO 2026-06-08 09:07:19 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:15:18s. Time for last 10,000,000: 14s. Last read position: chrX:21,967,279
INFO 2026-06-08 09:07:34 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:33s. Time for last 10,000,000: 15s. Last read position: chrX:54,470,124
INFO 2026-06-08 09:07:49 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:15:48s. Time for last 10,000,000: 14s. Last read position: chrX:154,364,924
INFO 2026-06-08 09:08:00 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:08:00 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:08:00 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:08:00 MarkDuplicates Before output close freeMemory: 203871560; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:08:00 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:08:00 MarkDuplicates After output close freeMemory: 104130232; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:08:00 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 40.18 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory