Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/ac390a35f579e5e605a15e5d4af37b/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/ac390a35f579e5e605a15e5d4af37b/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/e5ce900edb129abc079291fdf76e2e/659_bKP-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/bd8a86dc797a5ea693839c35caf299/659_bKP-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
LMNA--NTRK1
starfusion
arriba
ZCCHC14--IGH-@-ext
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
TVP23C--CDRT4
arriba
KLRC4--KLRK1
arriba
0%| | 0/16 [00:00<?, ?it/s]
Processing LMNA--NTRK1: 0%| | 0/16 [00:00<?, ?it/s]
Processing LMNA--NTRK1: 6%|▋ | 1/16 [00:00<00:01, 9.24it/s]
Processing ZCCHC14--IGH-@-ext: 6%|▋ | 1/16 [00:00<00:01, 9.24it/s]
Processing ZCCHC14--IGH-@-ext: 12%|█▎ | 2/16 [00:00<00:01, 9.47it/s]
Processing TLK2P1--AC110079.1: 12%|█▎ | 2/16 [00:00<00:01, 9.47it/s]
Processing TLK2P1--AC110079.1: 19%|█▉ | 3/16 [00:00<00:01, 9.55it/s]
Processing TLK2--AC240565.1: 19%|█▉ | 3/16 [00:00<00:01, 9.55it/s]
Processing TLK2--AC240565.1: 25%|██▌ | 4/16 [00:00<00:01, 9.59it/s]
Processing PCDHGB2--PCDHGA8: 25%|██▌ | 4/16 [00:00<00:01, 9.59it/s]
Processing PCDHGB2--PCDHGA8: 31%|███▏ | 5/16 [00:00<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGC4: 31%|███▏ | 5/16 [00:00<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGC4: 38%|███▊ | 6/16 [00:00<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGC3: 38%|███▊ | 6/16 [00:00<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGC3: 44%|████▍ | 7/16 [00:00<00:00, 9.62it/s]
Processing PCDHGB2--PCDHGC5: 44%|████▍ | 7/16 [00:00<00:00, 9.62it/s]
Processing PCDHGB2--PCDHGC5: 50%|█████ | 8/16 [00:00<00:00, 9.62it/s]
Processing PCDHGB2--PCDHGA10: 50%|█████ | 8/16 [00:00<00:00, 9.62it/s]
Processing PCDHGB2--PCDHGA10: 56%|█████▋ | 9/16 [00:00<00:00, 9.62it/s]
Processing PCDHGB2--PCDHGB7: 56%|█████▋ | 9/16 [00:00<00:00, 9.62it/s]
Processing PCDHGB2--PCDHGB7: 62%|██████▎ | 10/16 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGA9: 62%|██████▎ | 10/16 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGA9: 69%|██████▉ | 11/16 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGB6: 69%|██████▉ | 11/16 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGB6: 75%|███████▌ | 12/16 [00:01<00:00, 9.62it/s]
Processing PCDHGB2--PCDHGA11: 75%|███████▌ | 12/16 [00:01<00:00, 9.62it/s]
Processing PCDHGB2--PCDHGA11: 81%|████████▏ | 13/16 [00:01<00:00, 9.61it/s]
Processing PCDHGB2--PCDHGA12: 81%|████████▏ | 13/16 [00:01<00:00, 9.61it/s]
Processing PCDHGB2--PCDHGA12: 88%|████████▊ | 14/16 [00:01<00:00, 9.62it/s]
Processing TVP23C--CDRT4: 88%|████████▊ | 14/16 [00:01<00:00, 9.62it/s]
Processing TVP23C--CDRT4: 94%|█████████▍| 15/16 [00:01<00:00, 9.63it/s]
Processing KLRC4--KLRK1: 94%|█████████▍| 15/16 [00:01<00:00, 9.63it/s]
Processing KLRC4--KLRK1: 100%|██████████| 16/16 [00:01<00:00, 9.63it/s]
Processing KLRC4--KLRK1: 100%|██████████| 16/16 [00:01<00:00, 9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory