Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/ac390a35f579e5e605a15e5d4af37b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/ac390a35f579e5e605a15e5d4af37b/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/e5ce900edb129abc079291fdf76e2e/659_bKP-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/bd8a86dc797a5ea693839c35caf299/659_bKP-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
LMNA--NTRK1
starfusion
arriba
ZCCHC14--IGH-@-ext
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
TVP23C--CDRT4
arriba
KLRC4--KLRK1
arriba

  0%|          | 0/16 [00:00<?, ?it/s]
Processing LMNA--NTRK1:   0%|          | 0/16 [00:00<?, ?it/s]
Processing LMNA--NTRK1:   6%|▋         | 1/16 [00:00<00:01,  9.24it/s]
Processing ZCCHC14--IGH-@-ext:   6%|▋         | 1/16 [00:00<00:01,  9.24it/s]
Processing ZCCHC14--IGH-@-ext:  12%|█▎        | 2/16 [00:00<00:01,  9.47it/s]
Processing TLK2P1--AC110079.1:  12%|█▎        | 2/16 [00:00<00:01,  9.47it/s]
Processing TLK2P1--AC110079.1:  19%|█▉        | 3/16 [00:00<00:01,  9.55it/s]
Processing TLK2--AC240565.1:  19%|█▉        | 3/16 [00:00<00:01,  9.55it/s]  
Processing TLK2--AC240565.1:  25%|██▌       | 4/16 [00:00<00:01,  9.59it/s]
Processing PCDHGB2--PCDHGA8:  25%|██▌       | 4/16 [00:00<00:01,  9.59it/s]
Processing PCDHGB2--PCDHGA8:  31%|███▏      | 5/16 [00:00<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGC4:  31%|███▏      | 5/16 [00:00<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGC4:  38%|███▊      | 6/16 [00:00<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGC3:  38%|███▊      | 6/16 [00:00<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGC3:  44%|████▍     | 7/16 [00:00<00:00,  9.62it/s]
Processing PCDHGB2--PCDHGC5:  44%|████▍     | 7/16 [00:00<00:00,  9.62it/s]
Processing PCDHGB2--PCDHGC5:  50%|█████     | 8/16 [00:00<00:00,  9.62it/s]
Processing PCDHGB2--PCDHGA10:  50%|█████     | 8/16 [00:00<00:00,  9.62it/s]
Processing PCDHGB2--PCDHGA10:  56%|█████▋    | 9/16 [00:00<00:00,  9.62it/s]
Processing PCDHGB2--PCDHGB7:  56%|█████▋    | 9/16 [00:00<00:00,  9.62it/s] 
Processing PCDHGB2--PCDHGB7:  62%|██████▎   | 10/16 [00:01<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA9:  62%|██████▎   | 10/16 [00:01<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA9:  69%|██████▉   | 11/16 [00:01<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  69%|██████▉   | 11/16 [00:01<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  75%|███████▌  | 12/16 [00:01<00:00,  9.62it/s]
Processing PCDHGB2--PCDHGA11:  75%|███████▌  | 12/16 [00:01<00:00,  9.62it/s]
Processing PCDHGB2--PCDHGA11:  81%|████████▏ | 13/16 [00:01<00:00,  9.61it/s]
Processing PCDHGB2--PCDHGA12:  81%|████████▏ | 13/16 [00:01<00:00,  9.61it/s]
Processing PCDHGB2--PCDHGA12:  88%|████████▊ | 14/16 [00:01<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  88%|████████▊ | 14/16 [00:01<00:00,  9.62it/s]    
Processing TVP23C--CDRT4:  94%|█████████▍| 15/16 [00:01<00:00,  9.63it/s]
Processing KLRC4--KLRK1:  94%|█████████▍| 15/16 [00:01<00:00,  9.63it/s] 
Processing KLRC4--KLRK1: 100%|██████████| 16/16 [00:01<00:00,  9.63it/s]
Processing KLRC4--KLRK1: 100%|██████████| 16/16 [00:01<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory