Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/5c4cceb4251eb6820acc4094310479/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/5abc620374c502cd7581fdc13a30ff/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/5abc620374c502cd7581fdc13a30ff/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory