Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/9742a23f2a3c7761b1ce7d9ad23ac5/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/54f049dfbc00b81b4b81bcf9e20715/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/54f049dfbc00b81b4b81bcf9e20715/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 292047608
unpaired = 5114273
MERGED PAIRED END READS = 292047608
MATES PROCESSED = 589209489
TOTAL READS     = 297161881
DISTINCT READS  = 1.23527e+08
DISTINCT COUNTS = 1368
MAX COUNT       = 1263549
COUNTS OF 1     = 6.37528e+07
MAX TERMS       = 100
OBSERVED COUNTS (1263550)
1	63752819
2	28620347
3	13424738
4	6666271
5	3567968
6	2073232
7	1299318
8	865345
9	608911
10	444584
11	337423
12	262420
13	208157
14	168988
15	138990
16	116154
17	97442
18	83033
19	70938
20	61634
21	53949
22	47013
23	41649
24	36658
25	33082
26	29545
27	26873
28	24178
29	21747
30	19772
31	18406
32	16386
33	15384
34	14017
35	12800
36	11940
37	10946
38	10174
39	9644
40	8897
41	8193
42	7872
43	7148
44	6586
45	6423
46	5952
47	5833
48	5401
49	5185
50	4858
51	4507
52	4357
53	4029
54	3788
55	3576
56	3609
57	3450
58	3178
59	3003
60	2843
61	2724
62	2615
63	2573
64	2365
65	2261
66	2262
67	2173
68	2059
69	1942
70	1934
71	1871
72	1701
73	1665
74	1612
75	1601
76	1534
77	1439
78	1284
79	1307
80	1334
81	1229
82	1217
83	1146
84	1118
85	1136
86	1003
87	947
88	972
89	907
90	986
91	901
92	881
93	889
94	820
95	803
96	724
97	752
98	772
99	717
100	710
101	734
102	633
103	626
104	659
105	645
106	578
107	623
108	566
109	557
110	531
111	491
112	515
113	499
114	489
115	460
116	426
117	430
118	439
119	454
120	421
121	430
122	435
123	376
124	406
125	389
126	390
127	374
128	354
129	341
130	316
131	297
132	314
133	315
134	281
135	311
136	269
137	303
138	287
139	308
140	286
141	271
142	265
143	246
144	234
145	253
146	239
147	235
148	217
149	241
150	202
151	222
152	222
153	240
154	201
155	213
156	204
157	233
158	207
159	204
160	167
161	170
162	183
163	177
164	187
165	164
166	175
167	194
168	191
169	164
170	158
171	173
172	161
173	144
174	138
175	132
176	136
177	137
178	141
179	146
180	155
181	140
182	136
183	156
184	117
185	122
186	115
187	115
188	118
189	119
190	112
191	99
192	93
193	120
194	86
195	116
196	116
197	107
198	86
199	109
200	107
201	113
202	109
203	92
204	88
205	91
206	102
207	112
208	77
209	93
210	95
211	88
212	90
213	82
214	87
215	89
216	93
217	83
218	80
219	68
220	89
221	74
222	84
223	70
224	76
225	71
226	76
227	84
228	62
229	71
230	68
231	74
232	59
233	58
234	84
235	72
236	62
237	55
238	74
239	52
240	62
241	63
242	63
243	67
244	59
245	51
246	62
247	59
248	53
249	61
250	57
251	47
252	47
253	56
254	63
255	50
256	51
257	41
258	47
259	54
260	51
261	51
262	44
263	42
264	44
265	49
266	45
267	44
268	49
269	35
270	36
271	38
272	47
273	38
274	40
275	40
276	48
277	44
278	37
279	44
280	43
281	35
282	48
283	35
284	42
285	34
286	33
287	44
288	47
289	33
290	37
291	48
292	27
293	35
294	45
295	37
296	30
297	35
298	34
299	30
300	37
301	31
302	45
303	37
304	36
305	29
306	19
307	30
308	30
309	34
310	17
311	18
312	34
313	23
314	20
315	26
316	17
317	26
318	44
319	40
320	28
321	26
322	32
323	19
324	26
325	30
326	20
327	28
328	21
329	21
330	26
331	11
332	23
333	22
334	35
335	24
336	27
337	22
338	28
339	24
340	13
341	18
342	24
343	18
344	18
345	26
346	30
347	20
348	23
349	27
350	24
351	22
352	22
353	12
354	20
355	20
356	21
357	19
358	16
359	18
360	25
361	16
362	22
363	21
364	22
365	28
366	23
367	19
368	21
369	12
370	10
371	18
372	20
373	15
374	18
375	20
376	14
377	29
378	12
379	12
380	20
381	20
382	22
383	12
384	12
385	15
386	20
387	16
388	20
389	23
390	15
391	24
392	8
393	16
394	15
395	14
396	14
397	14
398	16
399	12
400	12
401	9
402	18
403	20
404	17
405	14
406	13
407	20
408	19
409	9
410	10
411	9
412	15
413	14
414	12
415	13
416	13
417	16
418	16
419	14
420	10
421	9
422	12
423	14
424	13
425	16
426	13
427	17
428	11
429	16
430	11
431	14
432	8
433	8
434	14
435	13
436	13
437	7
438	8
439	8
440	9
441	9
442	10
443	8
444	10
445	14
446	14
447	6
448	4
449	16
450	12
451	9
452	9
453	13
454	4
455	8
456	8
457	11
458	13
459	7
460	10
461	11
462	15
463	9
464	8
465	12
466	7
467	5
468	7
469	11
470	5
471	5
472	7
473	14
474	9
475	9
476	8
477	10
478	13
479	7
480	8
481	5
482	9
483	7
484	8
485	6
486	11
487	6
488	8
489	13
490	7
491	7
492	6
493	5
494	2
495	8
496	7
497	10
498	6
499	5
500	8
501	4
502	8
503	11
504	8
505	6
506	13
507	7
508	4
509	9
510	7
511	9
512	7
513	9
514	7
515	6
516	6
517	6
518	6
519	8
520	3
521	7
522	6
523	9
524	4
525	10
526	4
527	6
528	7
529	3
530	5
531	6
532	9
533	11
534	3
535	6
536	5
537	6
538	10
539	2
540	7
541	5
542	4
543	5
544	8
545	8
546	8
547	6
548	6
549	4
550	2
551	7
552	8
553	11
554	5
555	9
556	6
557	5
558	6
559	5
560	4
561	3
562	4
563	1
564	4
565	8
566	6
567	10
568	7
569	3
570	7
571	6
572	9
573	10
574	10
575	3
576	9
577	2
578	2
579	7
580	8
581	4
582	3
583	5
584	7
585	4
586	6
587	6
588	4
589	4
590	4
591	8
592	2
593	3
594	5
595	4
596	4
597	4
598	6
599	4
600	3
601	5
602	5
603	7
604	3
605	2
606	3
607	5
608	4
609	4
610	6
611	5
612	3
613	10
614	3
615	6
616	7
617	4
618	6
619	6
620	5
621	7
622	5
623	3
624	5
625	6
626	5
627	2
628	1
629	3
630	2
631	3
632	4
633	1
634	4
635	1
636	3
637	2
638	1
639	10
640	3
641	7
643	6
644	3
645	1
646	6
648	3
649	5
650	3
651	3
652	1
653	5
654	4
655	1
656	6
657	2
658	6
659	3
660	4
661	1
662	4
663	1
664	3
665	5
667	4
669	2
670	3
671	1
672	4
673	4
674	2
675	3
676	3
677	3
678	3
679	3
680	6
681	2
682	4
683	4
684	2
685	2
686	2
687	3
688	3
689	7
690	1
691	3
692	6
693	1
694	5
695	1
696	3
697	4
699	2
700	2
701	2
702	3
703	2
704	1
705	3
706	1
707	1
708	2
709	6
710	5
711	3
712	1
714	2
715	1
716	3
717	3
718	5
719	3
720	3
721	3
722	5
723	4
724	5
725	3
726	5
727	1
728	3
729	2
730	3
731	3
732	2
733	1
734	5
735	1
736	2
737	1
738	4
739	3
740	1
741	3
742	3
743	1
744	2
745	3
747	4
748	1
749	2
750	2
751	2
752	4
753	5
754	1
755	2
756	5
757	2
758	2
759	5
760	2
761	1
762	1
763	1
764	2
765	3
766	5
767	1
768	1
769	1
770	1
771	2
772	4
773	1
774	2
775	1
776	2
777	3
778	2
779	2
780	2
781	1
782	1
783	2
784	3
785	1
786	4
788	1
789	2
790	2
791	2
792	1
793	1
794	2
795	1
796	4
797	2
798	1
799	1
800	1
801	2
802	1
803	2
805	1
806	2
807	5
808	1
809	2
810	2
811	1
812	1
813	2
814	2
816	3
817	2
818	3
820	1
821	1
822	1
823	1
824	2
825	1
826	2
827	3
828	2
829	1
830	2
831	3
832	1
833	2
834	2
835	1
836	1
837	3
838	2
839	4
840	2
841	1
842	4
843	4
844	2
845	1
846	3
847	2
848	2
849	3
850	1
851	1
852	1
853	1
854	2
855	1
856	2
857	3
858	2
860	7
861	4
862	2
863	1
865	3
866	2
867	2
868	1
869	1
870	2
872	2
874	1
875	2
879	3
880	1
882	4
883	4
884	2
885	2
886	4
887	1
888	1
889	2
890	1
891	1
893	1
894	2
896	1
897	2
898	1
899	5
904	3
905	1
907	1
909	1
910	1
911	2
913	1
918	2
919	2
923	1
924	5
925	1
926	1
928	2
929	2
930	1
931	1
932	1
934	2
935	1
936	3
937	1
938	1
939	1
940	1
942	1
943	3
944	1
945	1
948	1
949	1
950	1
951	1
952	1
953	1
955	1
958	1
960	2
961	1
963	2
964	3
966	1
969	1
972	2
974	2
975	3
976	4
977	1
978	1
980	1
983	3
984	1
985	1
986	1
989	1
990	4
991	3
992	1
995	1
997	2
998	2
1001	3
1002	2
1004	2
1006	1
1008	2
1010	1
1014	1
1015	2
1016	1
1017	1
1018	1
1019	2
1021	2
1022	1
1023	1
1026	1
1027	5
1029	1
1030	2
1031	1
1032	1
1037	1
1038	1
1039	1
1041	1
1044	1
1046	1
1052	1
1057	1
1058	4
1059	2
1060	1
1062	2
1063	1
1064	1
1065	1
1066	1
1068	1
1071	1
1073	1
1075	1
1078	1
1079	1
1080	3
1081	1
1082	1
1086	4
1089	1
1092	3
1094	2
1095	1
1098	1
1099	1
1100	2
1101	2
1103	1
1104	3
1105	1
1106	1
1108	1
1113	2
1114	1
1116	1
1117	2
1120	2
1122	3
1125	2
1129	1
1130	1
1133	1
1137	2
1138	1
1139	1
1141	1
1143	1
1152	1
1155	2
1157	1
1159	1
1160	1
1165	1
1170	1
1177	1
1180	1
1181	1
1184	1
1185	2
1186	1
1193	3
1194	2
1195	3
1199	2
1200	1
1202	1
1203	1
1208	1
1209	1
1210	1
1215	1
1218	3
1220	1
1222	2
1223	2
1224	1
1226	2
1228	1
1229	1
1231	2
1232	1
1234	2
1236	1
1237	1
1239	2
1240	1
1247	2
1249	2
1250	2
1251	1
1254	1
1256	1
1257	1
1260	1
1264	1
1266	1
1267	1
1268	1
1269	1
1274	2
1281	1
1283	1
1287	1
1288	2
1291	1
1293	2
1299	1
1303	1
1308	1
1310	1
1317	2
1318	1
1320	2
1321	2
1322	1
1325	1
1328	1
1329	1
1331	2
1336	1
1339	2
1344	1
1345	3
1347	1
1349	2
1353	1
1354	1
1357	1
1365	3
1366	1
1368	1
1373	1
1374	3
1378	1
1380	1
1381	1
1382	1
1383	1
1386	1
1387	1
1391	1
1397	1
1399	1
1401	1
1404	1
1408	1
1409	1
1412	1
1416	1
1418	1
1420	1
1423	1
1425	1
1428	1
1429	1
1431	1
1433	1
1435	1
1438	2
1440	1
1443	2
1444	1
1446	2
1451	1
1453	1
1457	2
1459	1
1460	1
1461	1
1464	1
1468	1
1470	1
1471	2
1475	1
1476	1
1480	1
1483	1
1487	1
1488	1
1491	1
1495	1
1497	1
1499	2
1502	1
1503	1
1505	1
1506	1
1507	1
1510	1
1511	1
1512	1
1517	3
1522	1
1523	1
1524	2
1526	2
1531	1
1546	2
1548	1
1550	1
1553	1
1556	1
1563	1
1564	1
1565	1
1567	3
1573	1
1574	1
1579	1
1594	2
1598	1
1605	1
1606	1
1607	1
1611	1
1614	2
1617	1
1619	1
1620	1
1624	1
1629	1
1637	1
1639	2
1640	1
1641	1
1644	1
1647	1
1648	1
1649	1
1652	2
1653	1
1657	1
1661	1
1663	2
1667	2
1672	1
1683	2
1687	1
1688	1
1689	1
1692	1
1695	2
1703	1
1708	1
1714	2
1730	1
1733	1
1735	1
1742	1
1743	2
1744	1
1750	1
1754	1
1758	1
1767	2
1770	1
1774	2
1785	1
1787	1
1788	1
1796	1
1798	1
1799	1
1804	1
1816	1
1817	2
1824	1
1826	1
1828	1
1837	1
1856	1
1866	1
1868	1
1874	1
1878	1
1890	1
1892	3
1894	1
1899	1
1905	1
1906	1
1914	1
1915	1
1916	1
1921	1
1926	1
1928	1
1932	1
1944	1
1946	1
1947	1
1973	1
1975	1
1976	1
1984	1
1987	1
1989	1
2012	1
2017	1
2020	1
2040	1
2047	1
2050	1
2064	1
2067	1
2070	1
2075	1
2078	2
2082	1
2093	2
2115	1
2131	1
2137	1
2147	2
2152	1
2156	1
2162	2
2203	1
2213	1
2217	1
2224	1
2246	1
2254	2
2261	1
2275	1
2283	1
2301	1
2308	1
2310	1
2352	1
2358	1
2382	1
2396	1
2399	1
2401	1
2474	1
2493	1
2507	1
2512	1
2570	1
2590	1
2597	1
2613	1
2621	1
2634	1
2641	1
2657	1
2661	1
2711	1
2728	1
2735	1
2777	1
2796	1
2800	1
2815	1
2816	1
2875	1
2885	1
2928	1
2949	1
2991	1
3024	1
3080	1
3096	1
3139	1
3153	1
3155	1
3182	1
3187	1
3191	1
3226	1
3278	1
3284	1
3294	1
3414	1
3496	1
3524	1
3526	1
3567	1
3614	1
3675	1
3686	1
3845	1
3893	1
4305	1
4309	1
4361	1
4527	1
4928	1
5140	1
5303	1
5548	1
5578	1
5881	1
6412	1
6793	1
6834	1
7415	1
9998	1
19921	1
1263549	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
............................_........_................................._
...............__................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]