Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/1580b0304f21539358788f096e10c3/fi_workdir/659_end-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/f498c8093ce8f382719a69292b510b/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/f498c8093ce8f382719a69292b510b/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 13671
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 13671
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:13671
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC009055.1--ASIC2 HAVANA gene 12504 25985 . + . FI_gene_label "ASIC2^ENSG00000108684.15" ; ID "AC009055.1--ASIC2^ASIC2^ENSG00000108684.15" ; ccdsid "CCDS11276.1" ; exon_id "ENSE00001248823.4" ; exon_number 1 ; gene_id "AC009055.1--ASIC2^ASIC2^ENSG00000108684.15" ; gene_name ASIC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132885.4" ; havana_transcript "OTTHUMT00000256378.1" ; hgnc_id "HGNC:99" ; level 2 ; orig_coord_info "chr17,33291408,33292115,-" ; protein_id "ENSP00000225823.2" ; tag basic MANE_Select CCDS ; transcript_id "AC009055.1--ASIC2^ENST00000225823.7" ; transcript_name "ASIC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC009055.1--ASIC2 HAVANA mRNA 12504 25985 . + . FI_gene_label "ASIC2^ENSG00000108684.15" ; ID "AC009055.1--ASIC2^ENST00000225823.7" ; Parent "AC009055.1--ASIC2^ASIC2^ENSG00000108684.15" ; ccdsid "CCDS11276.1" ; exon_id "ENSE00001248823.4" ; exon_number 1 ; gene_id "AC009055.1--ASIC2^ASIC2^ENSG00000108684.15" ; gene_name ASIC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132885.4" ; havana_transcript "OTTHUMT00000256378.1" ; hgnc_id "HGNC:99" ; level 2 ; orig_coord_info "chr17,33291408,33292115,-" ; protein_id "ENSP00000225823.2" ; tag basic MANE_Select CCDS ; transcript_id "AC009055.1--ASIC2^ENST00000225823.7" ; transcript_name "ASIC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC110079.1--SEPTIN14 HAVANA gene 16519 30066 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AC110079.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AC110079.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC110079.1--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
AC110079.1--SEPTIN14 HAVANA mRNA 16519 30066 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AC110079.1--SEPTIN14^ENST00000388975.4" ; Parent "AC110079.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AC110079.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC110079.1--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AL359382.2--PXT1 HAVANA gene 5320 11392 . + . FI_gene_label "PXT1^ENSG00000179165.11" ; ID "AL359382.2--PXT1^PXT1^ENSG00000179165.11" ; ccdsid "CCDS4820.2" ; exon_id "ENSE00001763444.1" ; exon_number 3 ; gene_id "AL359382.2--PXT1^PXT1^ENSG00000179165.11" ; gene_name PXT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159815.4" ; havana_transcript "OTTHUMT00000357516.3" ; hgnc_id "HGNC:18312" ; level 1 ; orig_coord_info "chr6,36425914,36426082,-" ; protein_id "ENSP00000419944.1" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "AL359382.2--PXT1^ENST00000454782.3" ; transcript_name "PXT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL359382.2--PXT1 HAVANA mRNA 5320 11392 . + . FI_gene_label "PXT1^ENSG00000179165.11" ; ID "AL359382.2--PXT1^ENST00000454782.3" ; Parent "AL359382.2--PXT1^PXT1^ENSG00000179165.11" ; ccdsid "CCDS4820.2" ; exon_id "ENSE00001763444.1" ; exon_number 3 ; gene_id "AL359382.2--PXT1^PXT1^ENSG00000179165.11" ; gene_name PXT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159815.4" ; havana_transcript "OTTHUMT00000357516.3" ; hgnc_id "HGNC:18312" ; level 1 ; orig_coord_info "chr6,36425914,36426082,-" ; protein_id "ENSP00000419944.1" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "AL359382.2--PXT1^ENST00000454782.3" ; transcript_name "PXT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL513164.1--PXT1 HAVANA gene 7312 13384 . + . FI_gene_label "PXT1^ENSG00000179165.11" ; ID "AL513164.1--PXT1^PXT1^ENSG00000179165.11" ; ccdsid "CCDS4820.2" ; exon_id "ENSE00001763444.1" ; exon_number 3 ; gene_id "AL513164.1--PXT1^PXT1^ENSG00000179165.11" ; gene_name PXT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159815.4" ; havana_transcript "OTTHUMT00000357516.3" ; hgnc_id "HGNC:18312" ; level 1 ; orig_coord_info "chr6,36425914,36426082,-" ; protein_id "ENSP00000419944.1" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "AL513164.1--PXT1^ENST00000454782.3" ; transcript_name "PXT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL513164.1--PXT1 HAVANA mRNA 7312 13384 . + . FI_gene_label "PXT1^ENSG00000179165.11" ; ID "AL513164.1--PXT1^ENST00000454782.3" ; Parent "AL513164.1--PXT1^PXT1^ENSG00000179165.11" ; ccdsid "CCDS4820.2" ; exon_id "ENSE00001763444.1" ; exon_number 3 ; gene_id "AL513164.1--PXT1^PXT1^ENSG00000179165.11" ; gene_name PXT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159815.4" ; havana_transcript "OTTHUMT00000357516.3" ; hgnc_id "HGNC:18312" ; level 1 ; orig_coord_info "chr6,36425914,36426082,-" ; protein_id "ENSP00000419944.1" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "AL513164.1--PXT1^ENST00000454782.3" ; transcript_name "PXT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL591428.1--CLVS2 HAVANA gene 10236 25926 . + . FI_gene_label "CLVS2^ENSG00000146352.13" ; ID "AL591428.1--CLVS2^CLVS2^ENSG00000146352.13" ; ccdsid "CCDS34525.1" ; exon_id "ENSE00001281966.3" ; exon_number 2 ; gene_id "AL591428.1--CLVS2^CLVS2^ENSG00000146352.13" ; gene_name CLVS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015495.4" ; havana_transcript "OTTHUMT00000042042.3" ; hgnc_id "HGNC:23046" ; level 2 ; orig_coord_info "chr6,122997778,122998166,+" ; protein_id "ENSP00000275162.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL591428.1--CLVS2^ENST00000275162.10" ; transcript_name "CLVS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL591428.1--CLVS2 HAVANA mRNA 10236 25926 . + . FI_gene_label "CLVS2^ENSG00000146352.13" ; ID "AL591428.1--CLVS2^ENST00000275162.10" ; Parent "AL591428.1--CLVS2^CLVS2^ENSG00000146352.13" ; ccdsid "CCDS34525.1" ; exon_id "ENSE00001281966.3" ; exon_number 2 ; gene_id "AL591428.1--CLVS2^CLVS2^ENSG00000146352.13" ; gene_name CLVS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015495.4" ; havana_transcript "OTTHUMT00000042042.3" ; hgnc_id "HGNC:23046" ; level 2 ; orig_coord_info "chr6,122997778,122998166,+" ; protein_id "ENSP00000275162.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL591428.1--CLVS2^ENST00000275162.10" ; transcript_name "CLVS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL592436.1--VANGL1 HAVANA gene 4794 15351 . + . FI_gene_label "VANGL1^ENSG00000173218.15" ; ID "AL592436.1--VANGL1^VANGL1^ENSG00000173218.15" ; ccdsid "CCDS883.1" ; exon_id "ENSE00003891059.1" ; exon_number 2 ; gene_id "AL592436.1--VANGL1^VANGL1^ENSG00000173218.15" ; gene_name VANGL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011971.4" ; havana_transcript "OTTHUMT00000033096.1" ; hgnc_id "HGNC:15512" ; level 2 ; orig_coord_info "chr1,115651414,115651484,+" ; protein_id "ENSP00000310800.3" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "AL592436.1--VANGL1^ENST00000310260.7" ; transcript_name "VANGL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL592436.1--VANGL1 HAVANA mRNA 4794 15351 . + . FI_gene_label "VANGL1^ENSG00000173218.15" ; ID "AL592436.1--VANGL1^ENST00000310260.7" ; Parent "AL592436.1--VANGL1^VANGL1^ENSG00000173218.15" ; ccdsid "CCDS883.1" ; exon_id "ENSE00003891059.1" ; exon_number 2 ; gene_id "AL592436.1--VANGL1^VANGL1^ENSG00000173218.15" ; gene_name VANGL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011971.4" ; havana_transcript "OTTHUMT00000033096.1" ; hgnc_id "HGNC:15512" ; level 2 ; orig_coord_info "chr1,115651414,115651484,+" ; protein_id "ENSP00000310800.3" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "AL592436.1--VANGL1^ENST00000310260.7" ; transcript_name "VANGL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B3GALT4--SHPRH HAVANA gene 7431 49824 . + . FI_gene_label "SHPRH^ENSG00000146414.16" ; ID "B3GALT4--SHPRH^SHPRH^ENSG00000146414.16" ; ccdsid "CCDS43513.2" ; exon_id "ENSE00001084901.4" ; exon_number 2 ; gene_id "B3GALT4--SHPRH^SHPRH^ENSG00000146414.16" ; gene_name SHPRH ; gene_type protein_coding ; havana_gene "OTTHUMG00000015750.4" ; havana_transcript "OTTHUMT00000376094.2" ; hgnc_id "HGNC:19336" ; level 2 ; orig_coord_info "chr6,145954690,145955322,-" ; protein_id "ENSP00000275233.7" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "B3GALT4--SHPRH^ENST00000275233.12" ; transcript_name "SHPRH-201" ; transcript_support_level 1 ; transcript_type protein_coding
B3GALT4--SHPRH HAVANA mRNA 7431 49824 . + . FI_gene_label "SHPRH^ENSG00000146414.16" ; ID "B3GALT4--SHPRH^ENST00000275233.12" ; Parent "B3GALT4--SHPRH^SHPRH^ENSG00000146414.16" ; ccdsid "CCDS43513.2" ; exon_id "ENSE00001084901.4" ; exon_number 2 ; gene_id "B3GALT4--SHPRH^SHPRH^ENSG00000146414.16" ; gene_name SHPRH ; gene_type protein_coding ; havana_gene "OTTHUMG00000015750.4" ; havana_transcript "OTTHUMT00000376094.2" ; hgnc_id "HGNC:19336" ; level 2 ; orig_coord_info "chr6,145954690,145955322,-" ; protein_id "ENSP00000275233.7" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "B3GALT4--SHPRH^ENST00000275233.12" ; transcript_name "SHPRH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B3GALT4--SHPRH HAVANA gene 1001 2703 . + . FI_gene_label "B3GALT4^ENSG00000235863.4" ; ID "B3GALT4--SHPRH^B3GALT4^ENSG00000235863.4" ; ccdsid "CCDS34425.1" ; exon_id "ENSE00001779507.3" ; exon_number 1 ; gene_id "B3GALT4--SHPRH^B3GALT4^ENSG00000235863.4" ; gene_name B3GALT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031100.4" ; havana_transcript "OTTHUMT00000076162.3" ; hgnc_id "HGNC:919" ; level 2 ; orig_coord_info "chr6,33277420,33278553,+" ; protein_id "ENSP00000390784.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B3GALT4--SHPRH^ENST00000451237.3" ; transcript_name "B3GALT4-204" ; transcript_support_level NA ; transcript_type protein_coding
B3GALT4--SHPRH HAVANA mRNA 1001 2703 . + . FI_gene_label "B3GALT4^ENSG00000235863.4" ; ID "B3GALT4--SHPRH^ENST00000451237.3" ; Parent "B3GALT4--SHPRH^B3GALT4^ENSG00000235863.4" ; ccdsid "CCDS34425.1" ; exon_id "ENSE00001779507.3" ; exon_number 1 ; gene_id "B3GALT4--SHPRH^B3GALT4^ENSG00000235863.4" ; gene_name B3GALT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031100.4" ; havana_transcript "OTTHUMT00000076162.3" ; hgnc_id "HGNC:919" ; level 2 ; orig_coord_info "chr6,33277420,33278553,+" ; protein_id "ENSP00000390784.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B3GALT4--SHPRH^ENST00000451237.3" ; transcript_name "B3GALT4-204" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
CARMIL1--PLEKHG1 HAVANA gene 1297 44153 . + . FI_gene_label "CARMIL1^ENSG00000079691.18" ; ID "CARMIL1--PLEKHG1^CARMIL1^ENSG00000079691.18" ; ccdsid "CCDS54973.1" ; exon_id "ENSE00001836916.2" ; exon_number 1 ; gene_id "CARMIL1--PLEKHG1^CARMIL1^ENSG00000079691.18" ; gene_name CARMIL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014393.6" ; havana_transcript "OTTHUMT00000040045.3" ; hgnc_id "HGNC:21581" ; level 1 ; orig_coord_info "chr6,25279796,25279835,+" ; protein_id "ENSP00000331983.6" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "CARMIL1--PLEKHG1^ENST00000329474.7" ; transcript_name "CARMIL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARMIL1--PLEKHG1 HAVANA mRNA 1297 44153 . + . FI_gene_label "CARMIL1^ENSG00000079691.18" ; ID "CARMIL1--PLEKHG1^ENST00000329474.7" ; Parent "CARMIL1--PLEKHG1^CARMIL1^ENSG00000079691.18" ; ccdsid "CCDS54973.1" ; exon_id "ENSE00001836916.2" ; exon_number 1 ; gene_id "CARMIL1--PLEKHG1^CARMIL1^ENSG00000079691.18" ; gene_name CARMIL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014393.6" ; havana_transcript "OTTHUMT00000040045.3" ; hgnc_id "HGNC:21581" ; level 1 ; orig_coord_info "chr6,25279796,25279835,+" ; protein_id "ENSP00000331983.6" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "CARMIL1--PLEKHG1^ENST00000329474.7" ; transcript_name "CARMIL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARMIL1--PLEKHG1 HAVANA gene 57310 77711 . + . FI_gene_label "PLEKHG1^ENSG00000120278.16" ; ID "CARMIL1--PLEKHG1^PLEKHG1^ENSG00000120278.16" ; ccdsid "CCDS34552.1" ; exon_id "ENSE00001444243.1" ; exon_number 2 ; gene_id "CARMIL1--PLEKHG1^PLEKHG1^ENSG00000120278.16" ; gene_name PLEKHG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015824.7" ; havana_transcript "OTTHUMT00000042691.3" ; hgnc_id "HGNC:20884" ; level 2 ; orig_coord_info "chr6,150733682,150734092,+" ; protein_id "ENSP00000351318.2" ; tag basic appris_principal_1 CCDS ; transcript_id "CARMIL1--PLEKHG1^ENST00000358517.6" ; transcript_name "PLEKHG1-201" ; transcript_support_level 5 ; transcript_type protein_coding
CARMIL1--PLEKHG1 HAVANA mRNA 57310 77711 . + . FI_gene_label "PLEKHG1^ENSG00000120278.16" ; ID "CARMIL1--PLEKHG1^ENST00000358517.6" ; Parent "CARMIL1--PLEKHG1^PLEKHG1^ENSG00000120278.16" ; ccdsid "CCDS34552.1" ; exon_id "ENSE00001444243.1" ; exon_number 2 ; gene_id "CARMIL1--PLEKHG1^PLEKHG1^ENSG00000120278.16" ; gene_name PLEKHG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015824.7" ; havana_transcript "OTTHUMT00000042691.3" ; hgnc_id "HGNC:20884" ; level 2 ; orig_coord_info "chr6,150733682,150734092,+" ; protein_id "ENSP00000351318.2" ; tag basic appris_principal_1 CCDS ; transcript_id "CARMIL1--PLEKHG1^ENST00000358517.6" ; transcript_name "PLEKHG1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^ENST00000239859.8" ; Parent "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^ENST00000317764.6" ; Parent "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CICP16--SEPTIN14 HAVANA gene 6817 20364 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "CICP16--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "CICP16--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CICP16--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
CICP16--SEPTIN14 HAVANA mRNA 6817 20364 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "CICP16--SEPTIN14^ENST00000388975.4" ; Parent "CICP16--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "CICP16--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CICP16--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
EML1--WDR25 HAVANA gene 4999 37547 . + . FI_gene_label "EML1^ENSG00000066629.18" ; ID "EML1--WDR25^EML1^ENSG00000066629.18" ; ccdsid "CCDS32155.1" ; exon_id "ENSE00003900021.1" ; exon_number 1 ; gene_id "EML1--WDR25^EML1^ENSG00000066629.18" ; gene_name EML1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171529.4" ; havana_transcript "OTTHUMT00000413943.1" ; hgnc_id "HGNC:3330" ; level 2 ; orig_coord_info "chr14,99793477,99793543,+" ; protein_id "ENSP00000262233.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EML1--WDR25^ENST00000262233.11" ; transcript_name "EML1-201" ; transcript_support_level 1 ; transcript_type protein_coding
EML1--WDR25 HAVANA mRNA 4999 37547 . + . FI_gene_label "EML1^ENSG00000066629.18" ; ID "EML1--WDR25^ENST00000262233.11" ; Parent "EML1--WDR25^EML1^ENSG00000066629.18" ; ccdsid "CCDS32155.1" ; exon_id "ENSE00003900021.1" ; exon_number 1 ; gene_id "EML1--WDR25^EML1^ENSG00000066629.18" ; gene_name EML1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171529.4" ; havana_transcript "OTTHUMT00000413943.1" ; hgnc_id "HGNC:3330" ; level 2 ; orig_coord_info "chr14,99793477,99793543,+" ; protein_id "ENSP00000262233.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EML1--WDR25^ENST00000262233.11" ; transcript_name "EML1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EML1--WDR25 HAVANA gene 40624 53922 . + . FI_gene_label "WDR25^ENSG00000176473.13" ; ID "EML1--WDR25^WDR25^ENSG00000176473.13" ; ccdsid "CCDS32157.1" ; exon_id "ENSE00001334780.5" ; exon_number 2 ; gene_id "EML1--WDR25^WDR25^ENSG00000176473.13" ; gene_name WDR25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171585.1" ; havana_transcript "OTTHUMT00000414312.1" ; hgnc_id "HGNC:21064" ; level 2 ; orig_coord_info "chr14,100380925,100381746,+" ; protein_id "ENSP00000334148.6" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "EML1--WDR25^ENST00000335290.10" ; transcript_name "WDR25-201" ; transcript_support_level 1 ; transcript_type protein_coding
EML1--WDR25 HAVANA mRNA 40624 53922 . + . FI_gene_label "WDR25^ENSG00000176473.13" ; ID "EML1--WDR25^ENST00000335290.10" ; Parent "EML1--WDR25^WDR25^ENSG00000176473.13" ; ccdsid "CCDS32157.1" ; exon_id "ENSE00001334780.5" ; exon_number 2 ; gene_id "EML1--WDR25^WDR25^ENSG00000176473.13" ; gene_name WDR25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171585.1" ; havana_transcript "OTTHUMT00000414312.1" ; hgnc_id "HGNC:21064" ; level 2 ; orig_coord_info "chr14,100380925,100381746,+" ; protein_id "ENSP00000334148.6" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "EML1--WDR25^ENST00000335290.10" ; transcript_name "WDR25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EPB41L2--ZFAND3 HAVANA gene 41293 54397 . + . FI_gene_label "ZFAND3^ENSG00000156639.12" ; ID "EPB41L2--ZFAND3^ZFAND3^ENSG00000156639.12" ; ccdsid "CCDS4836.1" ; exon_id "ENSE00001460453.3" ; exon_number 1 ; gene_id "EPB41L2--ZFAND3^ZFAND3^ENSG00000156639.12" ; gene_name ZFAND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014629.7" ; havana_transcript "OTTHUMT00000040424.4" ; hgnc_id "HGNC:18019" ; level 2 ; orig_coord_info "chr6,37819946,37820016,+" ; protein_id "ENSP00000287218.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EPB41L2--ZFAND3^ENST00000287218.9" ; transcript_name "ZFAND3-201" ; transcript_support_level 1 ; transcript_type protein_coding
EPB41L2--ZFAND3 HAVANA mRNA 41293 54397 . + . FI_gene_label "ZFAND3^ENSG00000156639.12" ; ID "EPB41L2--ZFAND3^ENST00000287218.9" ; Parent "EPB41L2--ZFAND3^ZFAND3^ENSG00000156639.12" ; ccdsid "CCDS4836.1" ; exon_id "ENSE00001460453.3" ; exon_number 1 ; gene_id "EPB41L2--ZFAND3^ZFAND3^ENSG00000156639.12" ; gene_name ZFAND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014629.7" ; havana_transcript "OTTHUMT00000040424.4" ; hgnc_id "HGNC:18019" ; level 2 ; orig_coord_info "chr6,37819946,37820016,+" ; protein_id "ENSP00000287218.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EPB41L2--ZFAND3^ENST00000287218.9" ; transcript_name "ZFAND3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EPB41L2--ZFAND3 HAVANA gene 1078 38292 . + . FI_gene_label "EPB41L2^ENSG00000079819.19" ; ID "EPB41L2--ZFAND3^EPB41L2^ENSG00000079819.19" ; ccdsid "CCDS5141.1" ; exon_id "ENSE00002729070.1" ; exon_number 2 ; gene_id "EPB41L2--ZFAND3^EPB41L2^ENSG00000079819.19" ; gene_name EPB41L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015560.12" ; havana_transcript "OTTHUMT00000042204.4" ; hgnc_id "HGNC:3379" ; level 2 ; orig_coord_info "chr6,130955994,130956485,-" ; protein_id "ENSP00000338481.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EPB41L2--ZFAND3^ENST00000337057.8" ; transcript_name "EPB41L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
EPB41L2--ZFAND3 HAVANA mRNA 1078 38292 . + . FI_gene_label "EPB41L2^ENSG00000079819.19" ; ID "EPB41L2--ZFAND3^ENST00000337057.8" ; Parent "EPB41L2--ZFAND3^EPB41L2^ENSG00000079819.19" ; ccdsid "CCDS5141.1" ; exon_id "ENSE00002729070.1" ; exon_number 2 ; gene_id "EPB41L2--ZFAND3^EPB41L2^ENSG00000079819.19" ; gene_name EPB41L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015560.12" ; havana_transcript "OTTHUMT00000042204.4" ; hgnc_id "HGNC:3379" ; level 2 ; orig_coord_info "chr6,130955994,130956485,-" ; protein_id "ENSP00000338481.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EPB41L2--ZFAND3^ENST00000337057.8" ; transcript_name "EPB41L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FBXO25--AC240565.1 HAVANA gene 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AC240565.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXO25--AC240565.1 HAVANA mRNA 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AC240565.1^ENST00000276326.9" ; Parent "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AC240565.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IBTK--TCP11 ENSEMBL gene 37764 48518 . + . FI_gene_label "TCP11^ENSG00000124678.20" ; ID "IBTK--TCP11^TCP11^ENSG00000124678.20" ; ccdsid "CCDS4799.1" ; exon_id "ENSE00003505467.1" ; exon_number 3 ; gene_id "IBTK--TCP11^TCP11^ENSG00000124678.20" ; gene_name TCP11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014560.9" ; hgnc_id "HGNC:11658" ; level 3 ; orig_coord_info "chr6,35140020,35140069,-" ; protein_id "ENSP00000244645.3" ; tag basic CCDS ; transcript_id "IBTK--TCP11^ENST00000244645.7" ; transcript_name "TCP11-201" ; transcript_support_level 1 ; transcript_type protein_coding
IBTK--TCP11 ENSEMBL mRNA 37764 48518 . + . FI_gene_label "TCP11^ENSG00000124678.20" ; ID "IBTK--TCP11^ENST00000244645.7" ; Parent "IBTK--TCP11^TCP11^ENSG00000124678.20" ; ccdsid "CCDS4799.1" ; exon_id "ENSE00003505467.1" ; exon_number 3 ; gene_id "IBTK--TCP11^TCP11^ENSG00000124678.20" ; gene_name TCP11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014560.9" ; hgnc_id "HGNC:11658" ; level 3 ; orig_coord_info "chr6,35140020,35140069,-" ; protein_id "ENSP00000244645.3" ; tag basic CCDS ; transcript_id "IBTK--TCP11^ENST00000244645.7" ; transcript_name "TCP11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IBTK--TCP11 HAVANA gene 1011 33575 . + . FI_gene_label "IBTK^ENSG00000005700.15" ; ID "IBTK--TCP11^IBTK^ENSG00000005700.15" ; ccdsid "CCDS34490.1" ; exon_id "ENSE00003511535.1" ; exon_number 2 ; gene_id "IBTK--TCP11^IBTK^ENSG00000005700.15" ; gene_name IBTK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015102.3" ; havana_transcript "OTTHUMT00000041337.3" ; hgnc_id "HGNC:17853" ; level 2 ; orig_coord_info "chr6,82240166,82240486,-" ; protein_id "ENSP00000305721.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "IBTK--TCP11^ENST00000306270.12" ; transcript_name "IBTK-201" ; transcript_support_level 1 ; transcript_type protein_coding
IBTK--TCP11 HAVANA mRNA 1011 33575 . + . FI_gene_label "IBTK^ENSG00000005700.15" ; ID "IBTK--TCP11^ENST00000306270.12" ; Parent "IBTK--TCP11^IBTK^ENSG00000005700.15" ; ccdsid "CCDS34490.1" ; exon_id "ENSE00003511535.1" ; exon_number 2 ; gene_id "IBTK--TCP11^IBTK^ENSG00000005700.15" ; gene_name IBTK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015102.3" ; havana_transcript "OTTHUMT00000041337.3" ; hgnc_id "HGNC:17853" ; level 2 ; orig_coord_info "chr6,82240166,82240486,-" ; protein_id "ENSP00000305721.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "IBTK--TCP11^ENST00000306270.12" ; transcript_name "IBTK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ILRUN--KCNK17 HAVANA gene 13594 19266 . + . FI_gene_label "KCNK17^ENSG00000124780.14" ; ID "ILRUN--KCNK17^KCNK17^ENSG00000124780.14" ; ccdsid "CCDS4842.1" ; exon_id "ENSE00002021329.2" ; exon_number 1 ; gene_id "ILRUN--KCNK17^KCNK17^ENSG00000124780.14" ; gene_name KCNK17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014646.3" ; havana_transcript "OTTHUMT00000040453.3" ; hgnc_id "HGNC:14465" ; level 2 ; orig_coord_info "chr6,39314084,39314320,-" ; protein_id "ENSP00000362328.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ILRUN--KCNK17^ENST00000373231.9" ; transcript_name "KCNK17-201" ; transcript_support_level 1 ; transcript_type protein_coding
ILRUN--KCNK17 HAVANA mRNA 13594 19266 . + . FI_gene_label "KCNK17^ENSG00000124780.14" ; ID "ILRUN--KCNK17^ENST00000373231.9" ; Parent "ILRUN--KCNK17^KCNK17^ENSG00000124780.14" ; ccdsid "CCDS4842.1" ; exon_id "ENSE00002021329.2" ; exon_number 1 ; gene_id "ILRUN--KCNK17^KCNK17^ENSG00000124780.14" ; gene_name KCNK17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014646.3" ; havana_transcript "OTTHUMT00000040453.3" ; hgnc_id "HGNC:14465" ; level 2 ; orig_coord_info "chr6,39314084,39314320,-" ; protein_id "ENSP00000362328.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ILRUN--KCNK17^ENST00000373231.9" ; transcript_name "KCNK17-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ILRUN--KCNK17 HAVANA gene 2415 7330 . + . FI_gene_label "ILRUN^ENSG00000196821.10" ; ID "ILRUN--KCNK17^ILRUN^ENSG00000196821.10" ; exon_id "ENSE00003524361.1" ; exon_number 2 ; gene_id "ILRUN--KCNK17^ILRUN^ENSG00000196821.10" ; gene_name ILRUN ; gene_type protein_coding ; havana_gene "OTTHUMG00000014553.2" ; havana_transcript "OTTHUMT00000040252.1" ; hgnc_id "HGNC:21215" ; level 2 ; orig_coord_info "chr6,34654625,34654715,-" ; protein_id "ENSP00000363133.1" ; tag basic ; transcript_id "ILRUN--KCNK17^ENST00000374021.1" ; transcript_name "ILRUN-201" ; transcript_support_level 3 ; transcript_type protein_coding
ILRUN--KCNK17 HAVANA mRNA 2415 7330 . + . FI_gene_label "ILRUN^ENSG00000196821.10" ; ID "ILRUN--KCNK17^ENST00000374021.1" ; Parent "ILRUN--KCNK17^ILRUN^ENSG00000196821.10" ; exon_id "ENSE00003524361.1" ; exon_number 2 ; gene_id "ILRUN--KCNK17^ILRUN^ENSG00000196821.10" ; gene_name ILRUN ; gene_type protein_coding ; havana_gene "OTTHUMG00000014553.2" ; havana_transcript "OTTHUMT00000040252.1" ; hgnc_id "HGNC:21215" ; level 2 ; orig_coord_info "chr6,34654625,34654715,-" ; protein_id "ENSP00000363133.1" ; tag basic ; transcript_id "ILRUN--KCNK17^ENST00000374021.1" ; transcript_name "ILRUN-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
JADE2--BRD4 HAVANA gene 31423 60117 . + . FI_gene_label "BRD4^ENSG00000141867.19" ; ID "JADE2--BRD4^BRD4^ENSG00000141867.19" ; ccdsid "CCDS12328.1" ; exon_id "ENSE00001113202.1" ; exon_number 2 ; gene_id "JADE2--BRD4^BRD4^ENSG00000141867.19" ; gene_name BRD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183252.8" ; havana_transcript "OTTHUMT00000465800.4" ; hgnc_id "HGNC:13575" ; level 2 ; orig_coord_info "chr19,15272815,15273099,-" ; protein_id "ENSP00000263377.1" ; tag overlapping_uORF basic appris_principal_1 CCDS ; transcript_id "JADE2--BRD4^ENST00000263377.6" ; transcript_name "BRD4-201" ; transcript_support_level 1 ; transcript_type protein_coding
JADE2--BRD4 HAVANA mRNA 31423 60117 . + . FI_gene_label "BRD4^ENSG00000141867.19" ; ID "JADE2--BRD4^ENST00000263377.6" ; Parent "JADE2--BRD4^BRD4^ENSG00000141867.19" ; ccdsid "CCDS12328.1" ; exon_id "ENSE00001113202.1" ; exon_number 2 ; gene_id "JADE2--BRD4^BRD4^ENSG00000141867.19" ; gene_name BRD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183252.8" ; havana_transcript "OTTHUMT00000465800.4" ; hgnc_id "HGNC:13575" ; level 2 ; orig_coord_info "chr19,15272815,15273099,-" ; protein_id "ENSP00000263377.1" ; tag overlapping_uORF basic appris_principal_1 CCDS ; transcript_id "JADE2--BRD4^ENST00000263377.6" ; transcript_name "BRD4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
JADE2--BRD4 HAVANA gene 2119 22956 . + . FI_gene_label "JADE2^ENSG00000043143.21" ; ID "JADE2--BRD4^JADE2^ENSG00000043143.21" ; ccdsid "CCDS78061.1" ; exon_id "ENSE00003520701.1" ; exon_number 2 ; gene_id "JADE2--BRD4^JADE2^ENSG00000043143.21" ; gene_name JADE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129122.5" ; havana_transcript "OTTHUMT00000251170.1" ; hgnc_id "HGNC:22984" ; level 1 ; orig_coord_info "chr5,134535858,134535915,+" ; protein_id "ENSP00000282605.4" ; tag basic appris_principal_4 exp_conf CCDS ; transcript_id "JADE2--BRD4^ENST00000282605.8" ; transcript_name "JADE2-201" ; transcript_support_level 2 ; transcript_type protein_coding
JADE2--BRD4 HAVANA mRNA 2119 22956 . + . FI_gene_label "JADE2^ENSG00000043143.21" ; ID "JADE2--BRD4^ENST00000282605.8" ; Parent "JADE2--BRD4^JADE2^ENSG00000043143.21" ; ccdsid "CCDS78061.1" ; exon_id "ENSE00003520701.1" ; exon_number 2 ; gene_id "JADE2--BRD4^JADE2^ENSG00000043143.21" ; gene_name JADE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129122.5" ; havana_transcript "OTTHUMT00000251170.1" ; hgnc_id "HGNC:22984" ; level 1 ; orig_coord_info "chr5,134535858,134535915,+" ; protein_id "ENSP00000282605.4" ; tag basic appris_principal_4 exp_conf CCDS ; transcript_id "JADE2--BRD4^ENST00000282605.8" ; transcript_name "JADE2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
KCNK5--SLC26A8 HAVANA gene 11320 32108 . + . FI_gene_label "SLC26A8^ENSG00000112053.14" ; ID "KCNK5--SLC26A8^SLC26A8^ENSG00000112053.14" ; ccdsid "CCDS4813.1" ; exon_id "ENSE00003603235.1" ; exon_number 2 ; gene_id "KCNK5--SLC26A8^SLC26A8^ENSG00000112053.14" ; gene_name SLC26A8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014586.5" ; havana_transcript "OTTHUMT00000356008.1" ; hgnc_id "HGNC:14468" ; level 2 ; orig_coord_info "chr6,36019520,36019707,-" ; protein_id "ENSP00000347778.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "KCNK5--SLC26A8^ENST00000355574.6" ; transcript_name "SLC26A8-201" ; transcript_support_level 2 ; transcript_type protein_coding
KCNK5--SLC26A8 HAVANA mRNA 11320 32108 . + . FI_gene_label "SLC26A8^ENSG00000112053.14" ; ID "KCNK5--SLC26A8^ENST00000355574.6" ; Parent "KCNK5--SLC26A8^SLC26A8^ENSG00000112053.14" ; ccdsid "CCDS4813.1" ; exon_id "ENSE00003603235.1" ; exon_number 2 ; gene_id "KCNK5--SLC26A8^SLC26A8^ENSG00000112053.14" ; gene_name SLC26A8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014586.5" ; havana_transcript "OTTHUMT00000356008.1" ; hgnc_id "HGNC:14468" ; level 2 ; orig_coord_info "chr6,36019520,36019707,-" ; protein_id "ENSP00000347778.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "KCNK5--SLC26A8^ENST00000355574.6" ; transcript_name "SLC26A8-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
KCNK5--SLC26A8 HAVANA gene 1001 8039 . + . FI_gene_label "KCNK5^ENSG00000164626.9" ; ID "KCNK5--SLC26A8^KCNK5^ENSG00000164626.9" ; ccdsid "CCDS4841.1" ; exon_id "ENSE00001418591.3" ; exon_number 1 ; gene_id "KCNK5--SLC26A8^KCNK5^ENSG00000164626.9" ; gene_name KCNK5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014642.2" ; havana_transcript "OTTHUMT00000040449.2" ; hgnc_id "HGNC:6280" ; level 2 ; orig_coord_info "chr6,39228926,39229111,-" ; protein_id "ENSP00000352527.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KCNK5--SLC26A8^ENST00000359534.4" ; transcript_name "KCNK5-201" ; transcript_support_level 1 ; transcript_type protein_coding
KCNK5--SLC26A8 HAVANA mRNA 1001 8039 . + . FI_gene_label "KCNK5^ENSG00000164626.9" ; ID "KCNK5--SLC26A8^ENST00000359534.4" ; Parent "KCNK5--SLC26A8^KCNK5^ENSG00000164626.9" ; ccdsid "CCDS4841.1" ; exon_id "ENSE00001418591.3" ; exon_number 1 ; gene_id "KCNK5--SLC26A8^KCNK5^ENSG00000164626.9" ; gene_name KCNK5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014642.2" ; havana_transcript "OTTHUMT00000040449.2" ; hgnc_id "HGNC:6280" ; level 2 ; orig_coord_info "chr6,39228926,39229111,-" ; protein_id "ENSP00000352527.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KCNK5--SLC26A8^ENST00000359534.4" ; transcript_name "KCNK5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIF13A--EPB41L2 HAVANA gene 1001 45005 . + . FI_gene_label "KIF13A^ENSG00000137177.20" ; ID "KIF13A--EPB41L2^KIF13A^ENSG00000137177.20" ; ccdsid "CCDS47381.1" ; exon_id "ENSE00002047091.2" ; exon_number 1 ; gene_id "KIF13A--EPB41L2^KIF13A^ENSG00000137177.20" ; gene_name KIF13A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014313.9" ; havana_transcript "OTTHUMT00000039954.5" ; hgnc_id "HGNC:14566" ; level 2 ; orig_coord_info "chr6,17987409,17987463,-" ; protein_id "ENSP00000259711.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KIF13A--EPB41L2^ENST00000259711.11" ; transcript_name "KIF13A-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIF13A--EPB41L2 HAVANA mRNA 1001 45005 . + . FI_gene_label "KIF13A^ENSG00000137177.20" ; ID "KIF13A--EPB41L2^ENST00000259711.11" ; Parent "KIF13A--EPB41L2^KIF13A^ENSG00000137177.20" ; ccdsid "CCDS47381.1" ; exon_id "ENSE00002047091.2" ; exon_number 1 ; gene_id "KIF13A--EPB41L2^KIF13A^ENSG00000137177.20" ; gene_name KIF13A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014313.9" ; havana_transcript "OTTHUMT00000039954.5" ; hgnc_id "HGNC:14566" ; level 2 ; orig_coord_info "chr6,17987409,17987463,-" ; protein_id "ENSP00000259711.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KIF13A--EPB41L2^ENST00000259711.11" ; transcript_name "KIF13A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIF13A--EPB41L2 HAVANA gene 50778 87992 . + . FI_gene_label "EPB41L2^ENSG00000079819.19" ; ID "KIF13A--EPB41L2^EPB41L2^ENSG00000079819.19" ; ccdsid "CCDS5141.1" ; exon_id "ENSE00002729070.1" ; exon_number 2 ; gene_id "KIF13A--EPB41L2^EPB41L2^ENSG00000079819.19" ; gene_name EPB41L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015560.12" ; havana_transcript "OTTHUMT00000042204.4" ; hgnc_id "HGNC:3379" ; level 2 ; orig_coord_info "chr6,130955994,130956485,-" ; protein_id "ENSP00000338481.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIF13A--EPB41L2^ENST00000337057.8" ; transcript_name "EPB41L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIF13A--EPB41L2 HAVANA mRNA 50778 87992 . + . FI_gene_label "EPB41L2^ENSG00000079819.19" ; ID "KIF13A--EPB41L2^ENST00000337057.8" ; Parent "KIF13A--EPB41L2^EPB41L2^ENSG00000079819.19" ; ccdsid "CCDS5141.1" ; exon_id "ENSE00002729070.1" ; exon_number 2 ; gene_id "KIF13A--EPB41L2^EPB41L2^ENSG00000079819.19" ; gene_name EPB41L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015560.12" ; havana_transcript "OTTHUMT00000042204.4" ; hgnc_id "HGNC:3379" ; level 2 ; orig_coord_info "chr6,130955994,130956485,-" ; protein_id "ENSP00000338481.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIF13A--EPB41L2^ENST00000337057.8" ; transcript_name "EPB41L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MBNL2--CDIN1 ENSEMBL gene 21777 47472 . + . FI_gene_label "CDIN1^ENSG00000186073.14" ; ID "MBNL2--CDIN1^CDIN1^ENSG00000186073.14" ; ccdsid "CCDS45216.1" ; exon_id "ENSE00003595471.1" ; exon_number 5 ; gene_id "MBNL2--CDIN1^CDIN1^ENSG00000186073.14" ; gene_name CDIN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172659.8" ; hgnc_id "HGNC:26929" ; level 3 ; orig_coord_info "chr15,36657854,36657905,+" ; protein_id "ENSP00000342433.4" ; tag basic CCDS ; transcript_id "MBNL2--CDIN1^ENST00000338183.8" ; transcript_name "CDIN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
MBNL2--CDIN1 ENSEMBL mRNA 21777 47472 . + . FI_gene_label "CDIN1^ENSG00000186073.14" ; ID "MBNL2--CDIN1^ENST00000338183.8" ; Parent "MBNL2--CDIN1^CDIN1^ENSG00000186073.14" ; ccdsid "CCDS45216.1" ; exon_id "ENSE00003595471.1" ; exon_number 5 ; gene_id "MBNL2--CDIN1^CDIN1^ENSG00000186073.14" ; gene_name CDIN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172659.8" ; hgnc_id "HGNC:26929" ; level 3 ; orig_coord_info "chr15,36657854,36657905,+" ; protein_id "ENSP00000342433.4" ; tag basic CCDS ; transcript_id "MBNL2--CDIN1^ENST00000338183.8" ; transcript_name "CDIN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MBNL2--CDIN1 ENSEMBL gene 1863 15275 . + . FI_gene_label "MBNL2^ENSG00000139793.19" ; ID "MBNL2--CDIN1^MBNL2^ENSG00000139793.19" ; ccdsid "CCDS9483.1" ; exon_id "ENSE00002718246.1" ; exon_number 2 ; gene_id "MBNL2--CDIN1^MBNL2^ENSG00000139793.19" ; gene_name MBNL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017239.4" ; hgnc_id "HGNC:16746" ; level 3 ; orig_coord_info "chr13,97276236,97276409,+" ; protein_id "ENSP00000344214.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "MBNL2--CDIN1^ENST00000343600.8" ; transcript_name "MBNL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MBNL2--CDIN1 ENSEMBL mRNA 1863 15275 . + . FI_gene_label "MBNL2^ENSG00000139793.19" ; ID "MBNL2--CDIN1^ENST00000343600.8" ; Parent "MBNL2--CDIN1^MBNL2^ENSG00000139793.19" ; ccdsid "CCDS9483.1" ; exon_id "ENSE00002718246.1" ; exon_number 2 ; gene_id "MBNL2--CDIN1^MBNL2^ENSG00000139793.19" ; gene_name MBNL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017239.4" ; hgnc_id "HGNC:16746" ; level 3 ; orig_coord_info "chr13,97276236,97276409,+" ; protein_id "ENSP00000344214.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "MBNL2--CDIN1^ENST00000343600.8" ; transcript_name "MBNL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MDFIC--CNTNAP2 HAVANA gene 15502 75535 . + . FI_gene_label "CNTNAP2^ENSG00000174469.23" ; ID "MDFIC--CNTNAP2^CNTNAP2^ENSG00000174469.23" ; ccdsid "CCDS5889.1" ; exon_id "ENSE00001384688.4" ; exon_number 1 ; gene_id "MDFIC--CNTNAP2^CNTNAP2^ENSG00000174469.23" ; gene_name CNTNAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152743.11" ; havana_transcript "OTTHUMT00000327668.3" ; hgnc_id "HGNC:13830" ; level 2 ; orig_coord_info "chr7,146116877,146116973,+" ; protein_id "ENSP00000354778.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "MDFIC--CNTNAP2^ENST00000361727.8" ; transcript_name "CNTNAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MDFIC--CNTNAP2 HAVANA mRNA 15502 75535 . + . FI_gene_label "CNTNAP2^ENSG00000174469.23" ; ID "MDFIC--CNTNAP2^ENST00000361727.8" ; Parent "MDFIC--CNTNAP2^CNTNAP2^ENSG00000174469.23" ; ccdsid "CCDS5889.1" ; exon_id "ENSE00001384688.4" ; exon_number 1 ; gene_id "MDFIC--CNTNAP2^CNTNAP2^ENSG00000174469.23" ; gene_name CNTNAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152743.11" ; havana_transcript "OTTHUMT00000327668.3" ; hgnc_id "HGNC:13830" ; level 2 ; orig_coord_info "chr7,146116877,146116973,+" ; protein_id "ENSP00000354778.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "MDFIC--CNTNAP2^ENST00000361727.8" ; transcript_name "CNTNAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MDFIC--CNTNAP2 HAVANA gene 1001 11702 . + . FI_gene_label "MDFIC^ENSG00000135272.12" ; ID "MDFIC--CNTNAP2^MDFIC^ENSG00000135272.12" ; ccdsid "CCDS55155.1" ; exon_id "ENSE00003473327.1" ; exon_number 2 ; gene_id "MDFIC--CNTNAP2^MDFIC^ENSG00000135272.12" ; gene_name MDFIC ; gene_type protein_coding ; havana_gene "OTTHUMG00000023647.9" ; havana_transcript "OTTHUMT00000059968.5" ; hgnc_id "HGNC:28870" ; level 2 ; orig_coord_info "chr7,114923034,114923127,+" ; protein_id "ENSP00000377126.1" ; tag CAGE_supported_TSS basic appris_principal_1 CCDS ; transcript_id "MDFIC--CNTNAP2^ENST00000393486.5" ; transcript_name "MDFIC-201" ; transcript_support_level 1 ; transcript_type protein_coding
MDFIC--CNTNAP2 HAVANA mRNA 1001 11702 . + . FI_gene_label "MDFIC^ENSG00000135272.12" ; ID "MDFIC--CNTNAP2^ENST00000393486.5" ; Parent "MDFIC--CNTNAP2^MDFIC^ENSG00000135272.12" ; ccdsid "CCDS55155.1" ; exon_id "ENSE00003473327.1" ; exon_number 2 ; gene_id "MDFIC--CNTNAP2^MDFIC^ENSG00000135272.12" ; gene_name MDFIC ; gene_type protein_coding ; havana_gene "OTTHUMG00000023647.9" ; havana_transcript "OTTHUMT00000059968.5" ; hgnc_id "HGNC:28870" ; level 2 ; orig_coord_info "chr7,114923034,114923127,+" ; protein_id "ENSP00000377126.1" ; tag CAGE_supported_TSS basic appris_principal_1 CCDS ; transcript_id "MDFIC--CNTNAP2^ENST00000393486.5" ; transcript_name "MDFIC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NHSL1--EZR HAVANA gene 25343 38760 . + . FI_gene_label "EZR^ENSG00000092820.18" ; ID "NHSL1--EZR^EZR^ENSG00000092820.18" ; ccdsid "CCDS5258.1" ; exon_id "ENSE00001212701.9" ; exon_number 1 ; gene_id "NHSL1--EZR^EZR^ENSG00000092820.18" ; gene_name EZR ; gene_type protein_coding ; havana_gene "OTTHUMG00000015917.2" ; havana_transcript "OTTHUMT00000042879.1" ; hgnc_id "HGNC:12691" ; level 2 ; orig_coord_info "chr6,158818082,158818093,-" ; protein_id "ENSP00000338934.7" ; tag alternative_5_UTR CAGE_supported_TSS basic appris_principal_2 CCDS ; transcript_id "NHSL1--EZR^ENST00000337147.11" ; transcript_name "EZR-201" ; transcript_support_level 1 ; transcript_type protein_coding
NHSL1--EZR HAVANA mRNA 25343 38760 . + . FI_gene_label "EZR^ENSG00000092820.18" ; ID "NHSL1--EZR^ENST00000337147.11" ; Parent "NHSL1--EZR^EZR^ENSG00000092820.18" ; ccdsid "CCDS5258.1" ; exon_id "ENSE00001212701.9" ; exon_number 1 ; gene_id "NHSL1--EZR^EZR^ENSG00000092820.18" ; gene_name EZR ; gene_type protein_coding ; havana_gene "OTTHUMG00000015917.2" ; havana_transcript "OTTHUMT00000042879.1" ; hgnc_id "HGNC:12691" ; level 2 ; orig_coord_info "chr6,158818082,158818093,-" ; protein_id "ENSP00000338934.7" ; tag alternative_5_UTR CAGE_supported_TSS basic appris_principal_2 CCDS ; transcript_id "NHSL1--EZR^ENST00000337147.11" ; transcript_name "EZR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NHSL1--EZR HAVANA gene 4108 13719 . + . FI_gene_label "NHSL1^ENSG00000135540.11" ; ID "NHSL1--EZR^NHSL1^ENSG00000135540.11" ; exon_id "ENSE00002150275.1" ; exon_number 1 ; gene_id "NHSL1--EZR^NHSL1^ENSG00000135540.11" ; gene_name NHSL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016321.3" ; havana_transcript "OTTHUMT00000395465.2" ; hgnc_id "HGNC:21021" ; level 2 ; orig_coord_info "chr6,138545623,138545638,-" ; protein_id "ENSP00000344582.5" ; tag mRNA_end_NF cds_end_NF not_organism_supported ; transcript_id "NHSL1--EZR^ENST00000342260.9" ; transcript_name "NHSL1-201" ; transcript_support_level 5 ; transcript_type protein_coding
NHSL1--EZR HAVANA mRNA 4108 13719 . + . FI_gene_label "NHSL1^ENSG00000135540.11" ; ID "NHSL1--EZR^ENST00000342260.9" ; Parent "NHSL1--EZR^NHSL1^ENSG00000135540.11" ; exon_id "ENSE00002150275.1" ; exon_number 1 ; gene_id "NHSL1--EZR^NHSL1^ENSG00000135540.11" ; gene_name NHSL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016321.3" ; havana_transcript "OTTHUMT00000395465.2" ; hgnc_id "HGNC:21021" ; level 2 ; orig_coord_info "chr6,138545623,138545638,-" ; protein_id "ENSP00000344582.5" ; tag mRNA_end_NF cds_end_NF not_organism_supported ; transcript_id "NHSL1--EZR^ENST00000342260.9" ; transcript_name "NHSL1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2--NBPF1 HAVANA gene 8089 55985 . + . FI_gene_label "NOTCH2^ENSG00000134250.20" ; ID "NOTCH2--NBPF1^NOTCH2^ENSG00000134250.20" ; ccdsid "CCDS908.1" ; exon_id "ENSE00003518443.2" ; exon_number 1 ; gene_id "NOTCH2--NBPF1^NOTCH2^ENSG00000134250.20" ; gene_name NOTCH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012177.8" ; havana_transcript "OTTHUMT00000033679.3" ; hgnc_id "HGNC:7882" ; level 2 ; orig_coord_info "chr1,120069334,120069406,-" ; protein_id "ENSP00000256646.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2--NBPF1^ENST00000256646.7" ; transcript_name "NOTCH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2--NBPF1 HAVANA mRNA 8089 55985 . + . FI_gene_label "NOTCH2^ENSG00000134250.20" ; ID "NOTCH2--NBPF1^ENST00000256646.7" ; Parent "NOTCH2--NBPF1^NOTCH2^ENSG00000134250.20" ; ccdsid "CCDS908.1" ; exon_id "ENSE00003518443.2" ; exon_number 1 ; gene_id "NOTCH2--NBPF1^NOTCH2^ENSG00000134250.20" ; gene_name NOTCH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012177.8" ; havana_transcript "OTTHUMT00000033679.3" ; hgnc_id "HGNC:7882" ; level 2 ; orig_coord_info "chr1,120069334,120069406,-" ; protein_id "ENSP00000256646.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2--NBPF1^ENST00000256646.7" ; transcript_name "NOTCH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2--NBPF1 HAVANA gene 64056 93762 . + . FI_gene_label "NBPF1^ENSG00000219481.10" ; ID "NOTCH2--NBPF1^NBPF1^ENSG00000219481.10" ; exon_id "ENSE00002247206.1" ; exon_number 4 ; gene_id "NOTCH2--NBPF1^NBPF1^ENSG00000219481.10" ; gene_name NBPF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002487.10" ; havana_transcript "OTTHUMT00000007320.7" ; hgnc_id "HGNC:26088" ; level 2 ; orig_coord_info "chr1,16591847,16592021,-" ; protein_id "ENSP00000473795.1" ; tag dotter_confirmed ; transcript_id "NOTCH2--NBPF1^ENST00000392963.5" ; transcript_name "NBPF1-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
NOTCH2--NBPF1 HAVANA mRNA 64056 93762 . + . FI_gene_label "NBPF1^ENSG00000219481.10" ; ID "NOTCH2--NBPF1^ENST00000392963.5" ; Parent "NOTCH2--NBPF1^NBPF1^ENSG00000219481.10" ; exon_id "ENSE00002247206.1" ; exon_number 4 ; gene_id "NOTCH2--NBPF1^NBPF1^ENSG00000219481.10" ; gene_name NBPF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002487.10" ; havana_transcript "OTTHUMT00000007320.7" ; hgnc_id "HGNC:26088" ; level 2 ; orig_coord_info "chr1,16591847,16592021,-" ; protein_id "ENSP00000473795.1" ; tag dotter_confirmed ; transcript_id "NOTCH2--NBPF1^ENST00000392963.5" ; transcript_name "NBPF1-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^ENST00000289272.3" ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^ENST00000378126.4" ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PDCD6--AHRR HAVANA gene 1026 15749 . + . FI_gene_label "PDCD6^ENSG00000249915.8" ; ID "PDCD6--AHRR^PDCD6^ENSG00000249915.8" ; ccdsid "CCDS3854.1" ; exon_id "ENSE00003848423.1" ; exon_number 1 ; gene_id "PDCD6--AHRR^PDCD6^ENSG00000249915.8" ; gene_name PDCD6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090283.6" ; havana_transcript "OTTHUMT00000206609.3" ; hgnc_id "HGNC:8765" ; level 2 ; orig_coord_info "chr5,271721,271821,+" ; protein_id "ENSP00000264933.4" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "PDCD6--AHRR^ENST00000264933.9" ; transcript_name "PDCD6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDCD6--AHRR HAVANA mRNA 1026 15749 . + . FI_gene_label "PDCD6^ENSG00000249915.8" ; ID "PDCD6--AHRR^ENST00000264933.9" ; Parent "PDCD6--AHRR^PDCD6^ENSG00000249915.8" ; ccdsid "CCDS3854.1" ; exon_id "ENSE00003848423.1" ; exon_number 1 ; gene_id "PDCD6--AHRR^PDCD6^ENSG00000249915.8" ; gene_name PDCD6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090283.6" ; havana_transcript "OTTHUMT00000206609.3" ; hgnc_id "HGNC:8765" ; level 2 ; orig_coord_info "chr5,271721,271821,+" ; protein_id "ENSP00000264933.4" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "PDCD6--AHRR^ENST00000264933.9" ; transcript_name "PDCD6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PDCD6--AHRR HAVANA gene 19578 40005 . + . FI_gene_label "AHRR^ENSG00000063438.19" ; ID "PDCD6--AHRR^AHRR^ENSG00000063438.19" ; exon_id "ENSE00003905820.1" ; exon_number 2 ; gene_id "PDCD6--AHRR^AHRR^ENSG00000063438.19" ; gene_name AHRR ; gene_type protein_coding ; havana_gene "OTTHUMG00000162171.9" ; hgnc_id "HGNC:346" ; level 2 ; orig_coord_info "chr5,343903,343964,+" ; protein_id "ENSP00000323816.6" ; tag mRNA_end_NF appris_principal_1 ; transcript_id "PDCD6--AHRR^ENST00000316418.10" ; transcript_name "AHRR-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDCD6--AHRR HAVANA mRNA 19578 40005 . + . FI_gene_label "AHRR^ENSG00000063438.19" ; ID "PDCD6--AHRR^ENST00000316418.10" ; Parent "PDCD6--AHRR^AHRR^ENSG00000063438.19" ; exon_id "ENSE00003905820.1" ; exon_number 2 ; gene_id "PDCD6--AHRR^AHRR^ENSG00000063438.19" ; gene_name AHRR ; gene_type protein_coding ; havana_gene "OTTHUMG00000162171.9" ; hgnc_id "HGNC:346" ; level 2 ; orig_coord_info "chr5,343903,343964,+" ; protein_id "ENSP00000323816.6" ; tag mRNA_end_NF appris_principal_1 ; transcript_id "PDCD6--AHRR^ENST00000316418.10" ; transcript_name "AHRR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBFOX2--GOLGA6L3 HAVANA gene 4921 23813 . + . FI_gene_label "RBFOX2^ENSG00000100320.23" ; ID "RBFOX2--GOLGA6L3^RBFOX2^ENSG00000100320.23" ; exon_id "ENSE00001419381.2" ; exon_number 1 ; gene_id "RBFOX2--GOLGA6L3^RBFOX2^ENSG00000100320.23" ; gene_name RBFOX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150585.12" ; havana_transcript "OTTHUMT00000319023.1" ; hgnc_id "HGNC:9906" ; level 2 ; orig_coord_info "chr22,35840192,35840218,-" ; protein_id "ENSP00000262829.7" ; tag basic ; transcript_id "RBFOX2--GOLGA6L3^ENST00000262829.11" ; transcript_name "RBFOX2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBFOX2--GOLGA6L3 HAVANA mRNA 4921 23813 . + . FI_gene_label "RBFOX2^ENSG00000100320.23" ; ID "RBFOX2--GOLGA6L3^ENST00000262829.11" ; Parent "RBFOX2--GOLGA6L3^RBFOX2^ENSG00000100320.23" ; exon_id "ENSE00001419381.2" ; exon_number 1 ; gene_id "RBFOX2--GOLGA6L3^RBFOX2^ENSG00000100320.23" ; gene_name RBFOX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150585.12" ; havana_transcript "OTTHUMT00000319023.1" ; hgnc_id "HGNC:9906" ; level 2 ; orig_coord_info "chr22,35840192,35840218,-" ; protein_id "ENSP00000262829.7" ; tag basic ; transcript_id "RBFOX2--GOLGA6L3^ENST00000262829.11" ; transcript_name "RBFOX2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RETREG1--TERT HAVANA gene 1042 14026 . + . FI_gene_label "RETREG1^ENSG00000154153.14" ; ID "RETREG1--TERT^RETREG1^ENSG00000154153.14" ; ccdsid "CCDS43304.1" ; exon_id "ENSE00002055885.2" ; exon_number 1 ; gene_id "RETREG1--TERT^RETREG1^ENSG00000154153.14" ; gene_name RETREG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161788.1" ; havana_transcript "OTTHUMT00000366090.1" ; hgnc_id "HGNC:25964" ; level 2 ; orig_coord_info "chr5,16616652,16616971,-" ; protein_id "ENSP00000304642.9" ; tag basic MANE_Select CCDS ; transcript_id "RETREG1--TERT^ENST00000306320.10" ; transcript_name "RETREG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RETREG1--TERT HAVANA mRNA 1042 14026 . + . FI_gene_label "RETREG1^ENSG00000154153.14" ; ID "RETREG1--TERT^ENST00000306320.10" ; Parent "RETREG1--TERT^RETREG1^ENSG00000154153.14" ; ccdsid "CCDS43304.1" ; exon_id "ENSE00002055885.2" ; exon_number 1 ; gene_id "RETREG1--TERT^RETREG1^ENSG00000154153.14" ; gene_name RETREG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161788.1" ; havana_transcript "OTTHUMT00000366090.1" ; hgnc_id "HGNC:25964" ; level 2 ; orig_coord_info "chr5,16616652,16616971,-" ; protein_id "ENSP00000304642.9" ; tag basic MANE_Select CCDS ; transcript_id "RETREG1--TERT^ENST00000306320.10" ; transcript_name "RETREG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RETREG1--TERT HAVANA gene 17042 36475 . + . FI_gene_label "TERT^ENSG00000164362.21" ; ID "RETREG1--TERT^TERT^ENSG00000164362.21" ; ccdsid "CCDS3861.2" ; exon_id "ENSE00003896691.1" ; exon_number 1 ; gene_id "RETREG1--TERT^TERT^ENSG00000164362.21" ; gene_name TERT ; gene_type protein_coding ; havana_gene "OTTHUMG00000090357.9" ; havana_transcript "OTTHUMT00000206729.4" ; hgnc_id "HGNC:11730" ; level 2 ; orig_coord_info "chr5,1294771,1294989,-" ; protein_id "ENSP00000309572.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RETREG1--TERT^ENST00000310581.10" ; transcript_name "TERT-201" ; transcript_support_level 1 ; transcript_type protein_coding
RETREG1--TERT HAVANA mRNA 17042 36475 . + . FI_gene_label "TERT^ENSG00000164362.21" ; ID "RETREG1--TERT^ENST00000310581.10" ; Parent "RETREG1--TERT^TERT^ENSG00000164362.21" ; ccdsid "CCDS3861.2" ; exon_id "ENSE00003896691.1" ; exon_number 1 ; gene_id "RETREG1--TERT^TERT^ENSG00000164362.21" ; gene_name TERT ; gene_type protein_coding ; havana_gene "OTTHUMG00000090357.9" ; havana_transcript "OTTHUMT00000206729.4" ; hgnc_id "HGNC:11730" ; level 2 ; orig_coord_info "chr5,1294771,1294989,-" ; protein_id "ENSP00000309572.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RETREG1--TERT^ENST00000310581.10" ; transcript_name "TERT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
REV3L--SYNE1 ENSEMBL gene 49509 227956 . + . FI_gene_label "SYNE1^ENSG00000131018.24" ; ID "REV3L--SYNE1^SYNE1^ENSG00000131018.24" ; exon_id "ENSE00003604375.1" ; exon_number 3 ; gene_id "REV3L--SYNE1^SYNE1^ENSG00000131018.24" ; gene_name SYNE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015841.14" ; hgnc_id "HGNC:17089" ; level 3 ; orig_coord_info "chr6,152628265,152628280,-" ; protein_id "ENSP00000341887.6" ; tag basic ; transcript_id "REV3L--SYNE1^ENST00000341594.9" ; transcript_name "SYNE1-201" ; transcript_support_level 5 ; transcript_type protein_coding
REV3L--SYNE1 ENSEMBL mRNA 49509 227956 . + . FI_gene_label "SYNE1^ENSG00000131018.24" ; ID "REV3L--SYNE1^ENST00000341594.9" ; Parent "REV3L--SYNE1^SYNE1^ENSG00000131018.24" ; exon_id "ENSE00003604375.1" ; exon_number 3 ; gene_id "REV3L--SYNE1^SYNE1^ENSG00000131018.24" ; gene_name SYNE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015841.14" ; hgnc_id "HGNC:17089" ; level 3 ; orig_coord_info "chr6,152628265,152628280,-" ; protein_id "ENSP00000341887.6" ; tag basic ; transcript_id "REV3L--SYNE1^ENST00000341594.9" ; transcript_name "SYNE1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
REV3L--SYNE1 ENSEMBL gene 1001 46082 . + . FI_gene_label "REV3L^ENSG00000009413.16" ; ID "REV3L--SYNE1^REV3L^ENSG00000009413.16" ; ccdsid "CCDS5091.2" ; exon_id "ENSE00003601969.1" ; exon_number 2 ; gene_id "REV3L--SYNE1^REV3L^ENSG00000009413.16" ; gene_name REV3L ; gene_type protein_coding ; havana_gene "OTTHUMG00000016318.5" ; hgnc_id "HGNC:9968" ; level 3 ; orig_coord_info "chr6,111482750,111482888,-" ; protein_id "ENSP00000351697.3" ; tag basic appris_principal_2 CCDS ; transcript_id "REV3L--SYNE1^ENST00000358835.7" ; transcript_name "REV3L-201" ; transcript_support_level 5 ; transcript_type protein_coding
REV3L--SYNE1 ENSEMBL mRNA 1001 46082 . + . FI_gene_label "REV3L^ENSG00000009413.16" ; ID "REV3L--SYNE1^ENST00000358835.7" ; Parent "REV3L--SYNE1^REV3L^ENSG00000009413.16" ; ccdsid "CCDS5091.2" ; exon_id "ENSE00003601969.1" ; exon_number 2 ; gene_id "REV3L--SYNE1^REV3L^ENSG00000009413.16" ; gene_name REV3L ; gene_type protein_coding ; havana_gene "OTTHUMG00000016318.5" ; hgnc_id "HGNC:9968" ; level 3 ; orig_coord_info "chr6,111482750,111482888,-" ; protein_id "ENSP00000351697.3" ; tag basic appris_principal_2 CCDS ; transcript_id "REV3L--SYNE1^ENST00000358835.7" ; transcript_name "REV3L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RMND1--TMEM181 HAVANA gene 3549 18347 . + . FI_gene_label "RMND1^ENSG00000155906.19" ; ID "RMND1--TMEM181^RMND1^ENSG00000155906.19" ; exon_id "ENSE00001404729.1" ; exon_number 2 ; gene_id "RMND1--TMEM181^RMND1^ENSG00000155906.19" ; gene_name RMND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015837.9" ; havana_transcript "OTTHUMT00000042722.3" ; hgnc_id "HGNC:21176" ; level 2 ; orig_coord_info "chr6,151436435,151436548,-" ; protein_id "ENSP00000336683.4" ; transcript_id "RMND1--TMEM181^ENST00000336451.8" ; transcript_name "RMND1-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
RMND1--TMEM181 HAVANA mRNA 3549 18347 . + . FI_gene_label "RMND1^ENSG00000155906.19" ; ID "RMND1--TMEM181^ENST00000336451.8" ; Parent "RMND1--TMEM181^RMND1^ENSG00000155906.19" ; exon_id "ENSE00001404729.1" ; exon_number 2 ; gene_id "RMND1--TMEM181^RMND1^ENSG00000155906.19" ; gene_name RMND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015837.9" ; havana_transcript "OTTHUMT00000042722.3" ; hgnc_id "HGNC:21176" ; level 2 ; orig_coord_info "chr6,151436435,151436548,-" ; protein_id "ENSP00000336683.4" ; transcript_id "RMND1--TMEM181^ENST00000336451.8" ; transcript_name "RMND1-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
RMND1--TMEM181 HAVANA gene 21440 40929 . + . FI_gene_label "TMEM181^ENSG00000146433.9" ; ID "RMND1--TMEM181^TMEM181^ENSG00000146433.9" ; exon_id "ENSE00001443463.1" ; exon_number 1 ; gene_id "RMND1--TMEM181^TMEM181^ENSG00000146433.9" ; gene_name TMEM181 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015913.1" ; havana_transcript "OTTHUMT00000042873.1" ; hgnc_id "HGNC:20958" ; level 2 ; orig_coord_info "chr6,158536735,158536865,+" ; protein_id "ENSP00000356057.4" ; tag non_canonical_U12 upstream_ATG basic appris_principal_1 ; transcript_id "RMND1--TMEM181^ENST00000367090.4" ; transcript_name "TMEM181-201" ; transcript_support_level 1 ; transcript_type protein_coding
RMND1--TMEM181 HAVANA mRNA 21440 40929 . + . FI_gene_label "TMEM181^ENSG00000146433.9" ; ID "RMND1--TMEM181^ENST00000367090.4" ; Parent "RMND1--TMEM181^TMEM181^ENSG00000146433.9" ; exon_id "ENSE00001443463.1" ; exon_number 1 ; gene_id "RMND1--TMEM181^TMEM181^ENSG00000146433.9" ; gene_name TMEM181 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015913.1" ; havana_transcript "OTTHUMT00000042873.1" ; hgnc_id "HGNC:20958" ; level 2 ; orig_coord_info "chr6,158536735,158536865,+" ; protein_id "ENSP00000356057.4" ; tag non_canonical_U12 upstream_ATG basic appris_principal_1 ; transcript_id "RMND1--TMEM181^ENST00000367090.4" ; transcript_name "TMEM181-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RN7SL420P--VANGL1 HAVANA gene 4958 15515 . + . FI_gene_label "VANGL1^ENSG00000173218.15" ; ID "RN7SL420P--VANGL1^VANGL1^ENSG00000173218.15" ; ccdsid "CCDS883.1" ; exon_id "ENSE00003891059.1" ; exon_number 2 ; gene_id "RN7SL420P--VANGL1^VANGL1^ENSG00000173218.15" ; gene_name VANGL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011971.4" ; havana_transcript "OTTHUMT00000033096.1" ; hgnc_id "HGNC:15512" ; level 2 ; orig_coord_info "chr1,115651414,115651484,+" ; protein_id "ENSP00000310800.3" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "RN7SL420P--VANGL1^ENST00000310260.7" ; transcript_name "VANGL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RN7SL420P--VANGL1 HAVANA mRNA 4958 15515 . + . FI_gene_label "VANGL1^ENSG00000173218.15" ; ID "RN7SL420P--VANGL1^ENST00000310260.7" ; Parent "RN7SL420P--VANGL1^VANGL1^ENSG00000173218.15" ; ccdsid "CCDS883.1" ; exon_id "ENSE00003891059.1" ; exon_number 2 ; gene_id "RN7SL420P--VANGL1^VANGL1^ENSG00000173218.15" ; gene_name VANGL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011971.4" ; havana_transcript "OTTHUMT00000033096.1" ; hgnc_id "HGNC:15512" ; level 2 ; orig_coord_info "chr1,115651414,115651484,+" ; protein_id "ENSP00000310800.3" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "RN7SL420P--VANGL1^ENST00000310260.7" ; transcript_name "VANGL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF217--USP49 HAVANA gene 4231 17153 . + . FI_gene_label "RNF217^ENSG00000146373.16" ; ID "RNF217--USP49^RNF217^ENSG00000146373.16" ; ccdsid "CCDS5129.1" ; exon_id "ENSE00003786918.1" ; exon_number 3 ; gene_id "RNF217--USP49^RNF217^ENSG00000146373.16" ; gene_name RNF217 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015504.6" ; havana_transcript "OTTHUMT00000042064.3" ; hgnc_id "HGNC:21487" ; level 2 ; orig_coord_info "chr6,125009277,125009282,+" ; protein_id "ENSP00000352734.2" ; tag basic CCDS ; transcript_id "RNF217--USP49^ENST00000359704.2" ; transcript_name "RNF217-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF217--USP49 HAVANA mRNA 4231 17153 . + . FI_gene_label "RNF217^ENSG00000146373.16" ; ID "RNF217--USP49^ENST00000359704.2" ; Parent "RNF217--USP49^RNF217^ENSG00000146373.16" ; ccdsid "CCDS5129.1" ; exon_id "ENSE00003786918.1" ; exon_number 3 ; gene_id "RNF217--USP49^RNF217^ENSG00000146373.16" ; gene_name RNF217 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015504.6" ; havana_transcript "OTTHUMT00000042064.3" ; hgnc_id "HGNC:21487" ; level 2 ; orig_coord_info "chr6,125009277,125009282,+" ; protein_id "ENSP00000352734.2" ; tag basic CCDS ; transcript_id "RNF217--USP49^ENST00000359704.2" ; transcript_name "RNF217-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF217--USP49 HAVANA gene 29272 43859 . + . FI_gene_label "USP49^ENSG00000164663.14" ; ID "RNF217--USP49^USP49^ENSG00000164663.14" ; ccdsid "CCDS4861.1" ; exon_id "ENSE00001086408.3" ; exon_number 4 ; gene_id "RNF217--USP49^USP49^ENSG00000164663.14" ; gene_name USP49 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014688.10" ; havana_transcript "OTTHUMT00000040536.3" ; hgnc_id "HGNC:20078" ; level 2 ; orig_coord_info "chr6,41805628,41806983,-" ; protein_id "ENSP00000362097.1" ; tag basic CCDS ; transcript_id "RNF217--USP49^ENST00000373006.5" ; transcript_name "USP49-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF217--USP49 HAVANA mRNA 29272 43859 . + . FI_gene_label "USP49^ENSG00000164663.14" ; ID "RNF217--USP49^ENST00000373006.5" ; Parent "RNF217--USP49^USP49^ENSG00000164663.14" ; ccdsid "CCDS4861.1" ; exon_id "ENSE00001086408.3" ; exon_number 4 ; gene_id "RNF217--USP49^USP49^ENSG00000164663.14" ; gene_name USP49 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014688.10" ; havana_transcript "OTTHUMT00000040536.3" ; hgnc_id "HGNC:20078" ; level 2 ; orig_coord_info "chr6,41805628,41806983,-" ; protein_id "ENSP00000362097.1" ; tag basic CCDS ; transcript_id "RNF217--USP49^ENST00000373006.5" ; transcript_name "USP49-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNU13--LLPH HAVANA gene 4331 9276 . + . FI_gene_label "SNU13^ENSG00000100138.15" ; ID "SNU13--LLPH^SNU13^ENSG00000100138.15" ; ccdsid "CCDS14022.1" ; exon_id "ENSE00001388935.4" ; exon_number 1 ; gene_id "SNU13--LLPH^SNU13^ENSG00000100138.15" ; gene_name SNU13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151189.9" ; havana_transcript "OTTHUMT00000321683.2" ; hgnc_id "HGNC:7819" ; level 2 ; orig_coord_info "chr22,41682356,41682358,-" ; protein_id "ENSP00000215956.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000215956.10" ; transcript_name "SNU13-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNU13--LLPH HAVANA mRNA 4331 9276 . + . FI_gene_label "SNU13^ENSG00000100138.15" ; ID "SNU13--LLPH^ENST00000215956.10" ; Parent "SNU13--LLPH^SNU13^ENSG00000100138.15" ; ccdsid "CCDS14022.1" ; exon_id "ENSE00001388935.4" ; exon_number 1 ; gene_id "SNU13--LLPH^SNU13^ENSG00000100138.15" ; gene_name SNU13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151189.9" ; havana_transcript "OTTHUMT00000321683.2" ; hgnc_id "HGNC:7819" ; level 2 ; orig_coord_info "chr22,41682356,41682358,-" ; protein_id "ENSP00000215956.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000215956.10" ; transcript_name "SNU13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNU13--LLPH HAVANA gene 13051 23027 . + . FI_gene_label "LLPH^ENSG00000139233.7" ; ID "SNU13--LLPH^LLPH^ENSG00000139233.7" ; ccdsid "CCDS8974.1" ; exon_id "ENSE00003592110.1" ; exon_number 2 ; gene_id "SNU13--LLPH^LLPH^ENSG00000139233.7" ; gene_name LLPH ; gene_type protein_coding ; havana_gene "OTTHUMG00000168959.4" ; havana_transcript "OTTHUMT00000401752.4" ; hgnc_id "HGNC:28229" ; level 2 ; orig_coord_info "chr12,66128896,66129106,-" ; protein_id "ENSP00000266604.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000266604.7" ; transcript_name "LLPH-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNU13--LLPH HAVANA mRNA 13051 23027 . + . FI_gene_label "LLPH^ENSG00000139233.7" ; ID "SNU13--LLPH^ENST00000266604.7" ; Parent "SNU13--LLPH^LLPH^ENSG00000139233.7" ; ccdsid "CCDS8974.1" ; exon_id "ENSE00003592110.1" ; exon_number 2 ; gene_id "SNU13--LLPH^LLPH^ENSG00000139233.7" ; gene_name LLPH ; gene_type protein_coding ; havana_gene "OTTHUMG00000168959.4" ; havana_transcript "OTTHUMT00000401752.4" ; hgnc_id "HGNC:28229" ; level 2 ; orig_coord_info "chr12,66128896,66129106,-" ; protein_id "ENSP00000266604.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000266604.7" ; transcript_name "LLPH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SYNE1--CCDC162P ENSEMBL gene 1403 179850 . + . FI_gene_label "SYNE1^ENSG00000131018.24" ; ID "SYNE1--CCDC162P^SYNE1^ENSG00000131018.24" ; exon_id "ENSE00003604375.1" ; exon_number 3 ; gene_id "SYNE1--CCDC162P^SYNE1^ENSG00000131018.24" ; gene_name SYNE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015841.14" ; hgnc_id "HGNC:17089" ; level 3 ; orig_coord_info "chr6,152628265,152628280,-" ; protein_id "ENSP00000341887.6" ; tag basic ; transcript_id "SYNE1--CCDC162P^ENST00000341594.9" ; transcript_name "SYNE1-201" ; transcript_support_level 5 ; transcript_type protein_coding
SYNE1--CCDC162P ENSEMBL mRNA 1403 179850 . + . FI_gene_label "SYNE1^ENSG00000131018.24" ; ID "SYNE1--CCDC162P^ENST00000341594.9" ; Parent "SYNE1--CCDC162P^SYNE1^ENSG00000131018.24" ; exon_id "ENSE00003604375.1" ; exon_number 3 ; gene_id "SYNE1--CCDC162P^SYNE1^ENSG00000131018.24" ; gene_name SYNE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015841.14" ; hgnc_id "HGNC:17089" ; level 3 ; orig_coord_info "chr6,152628265,152628280,-" ; protein_id "ENSP00000341887.6" ; tag basic ; transcript_id "SYNE1--CCDC162P^ENST00000341594.9" ; transcript_name "SYNE1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^ENST00000427199.3" ; Parent "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^ENST00000456936.4" ; Parent "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TPTE--BAGE2 HAVANA gene 1023 23850 . + . FI_gene_label "TPTE^ENSG00000274391.5" ; ID "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; ccdsid "CCDS74773.1" ; exon_id "ENSE00003735534.1" ; exon_number 4 ; gene_id "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; gene_name TPTE ; gene_type protein_coding ; havana_gene "OTTHUMG00000074127.15" ; havana_transcript "OTTHUMT00000157414.2" ; hgnc_id "HGNC:12023" ; level 2 ; orig_coord_info "chr21,10538724,10538734,+" ; protein_id "ENSP00000482488.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "TPTE--BAGE2^ENST00000427445.6" ; transcript_name "TPTE-201" ; transcript_support_level 1 ; transcript_type protein_coding
TPTE--BAGE2 HAVANA mRNA 1023 23850 . + . FI_gene_label "TPTE^ENSG00000274391.5" ; ID "TPTE--BAGE2^ENST00000427445.6" ; Parent "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; ccdsid "CCDS74773.1" ; exon_id "ENSE00003735534.1" ; exon_number 4 ; gene_id "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; gene_name TPTE ; gene_type protein_coding ; havana_gene "OTTHUMG00000074127.15" ; havana_transcript "OTTHUMT00000157414.2" ; hgnc_id "HGNC:12023" ; level 2 ; orig_coord_info "chr21,10538724,10538734,+" ; protein_id "ENSP00000482488.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "TPTE--BAGE2^ENST00000427445.6" ; transcript_name "TPTE-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UBE2Q2P1--RBFOX2 HAVANA gene 20511 39403 . + . FI_gene_label "RBFOX2^ENSG00000100320.23" ; ID "UBE2Q2P1--RBFOX2^RBFOX2^ENSG00000100320.23" ; exon_id "ENSE00001419381.2" ; exon_number 1 ; gene_id "UBE2Q2P1--RBFOX2^RBFOX2^ENSG00000100320.23" ; gene_name RBFOX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150585.12" ; havana_transcript "OTTHUMT00000319023.1" ; hgnc_id "HGNC:9906" ; level 2 ; orig_coord_info "chr22,35840192,35840218,-" ; protein_id "ENSP00000262829.7" ; tag basic ; transcript_id "UBE2Q2P1--RBFOX2^ENST00000262829.11" ; transcript_name "RBFOX2-201" ; transcript_support_level 1 ; transcript_type protein_coding
UBE2Q2P1--RBFOX2 HAVANA mRNA 20511 39403 . + . FI_gene_label "RBFOX2^ENSG00000100320.23" ; ID "UBE2Q2P1--RBFOX2^ENST00000262829.11" ; Parent "UBE2Q2P1--RBFOX2^RBFOX2^ENSG00000100320.23" ; exon_id "ENSE00001419381.2" ; exon_number 1 ; gene_id "UBE2Q2P1--RBFOX2^RBFOX2^ENSG00000100320.23" ; gene_name RBFOX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150585.12" ; havana_transcript "OTTHUMT00000319023.1" ; hgnc_id "HGNC:9906" ; level 2 ; orig_coord_info "chr22,35840192,35840218,-" ; protein_id "ENSP00000262829.7" ; tag basic ; transcript_id "UBE2Q2P1--RBFOX2^ENST00000262829.11" ; transcript_name "RBFOX2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF1BP1--MCUR1 HAVANA gene 1069 22012 . + . FI_gene_label "UHRF1BP1^ENSG00000065060.17" ; ID "UHRF1BP1--MCUR1^UHRF1BP1^ENSG00000065060.17" ; ccdsid "CCDS43455.1" ; exon_id "ENSE00001536064.4" ; exon_number 1 ; gene_id "UHRF1BP1--MCUR1^UHRF1BP1^ENSG00000065060.17" ; gene_name UHRF1BP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014557.2" ; havana_transcript "OTTHUMT00000040260.2" ; hgnc_id "HGNC:21216" ; level 2 ; orig_coord_info "chr6,34792251,34792294,+" ; protein_id "ENSP00000192788.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UHRF1BP1--MCUR1^ENST00000192788.6" ; transcript_name "UHRF1BP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
UHRF1BP1--MCUR1 HAVANA mRNA 1069 22012 . + . FI_gene_label "UHRF1BP1^ENSG00000065060.17" ; ID "UHRF1BP1--MCUR1^ENST00000192788.6" ; Parent "UHRF1BP1--MCUR1^UHRF1BP1^ENSG00000065060.17" ; ccdsid "CCDS43455.1" ; exon_id "ENSE00001536064.4" ; exon_number 1 ; gene_id "UHRF1BP1--MCUR1^UHRF1BP1^ENSG00000065060.17" ; gene_name UHRF1BP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014557.2" ; havana_transcript "OTTHUMT00000040260.2" ; hgnc_id "HGNC:21216" ; level 2 ; orig_coord_info "chr6,34792251,34792294,+" ; protein_id "ENSP00000192788.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UHRF1BP1--MCUR1^ENST00000192788.6" ; transcript_name "UHRF1BP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF1BP1--MCUR1 HAVANA gene 27286 42100 . + . FI_gene_label "MCUR1^ENSG00000050393.11" ; ID "UHRF1BP1--MCUR1^MCUR1^ENSG00000050393.11" ; ccdsid "CCDS35495.1" ; exon_id "ENSE00003699721.1" ; exon_number 1 ; gene_id "UHRF1BP1--MCUR1^MCUR1^ENSG00000050393.11" ; gene_name MCUR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014279.3" ; havana_transcript "OTTHUMT00000039909.3" ; hgnc_id "HGNC:21097" ; level 2 ; orig_coord_info "chr6,13814015,13814429,-" ; protein_id "ENSP00000368468.3" ; tag basic appris_principal_1 CCDS ; transcript_id "UHRF1BP1--MCUR1^ENST00000379170.8" ; transcript_name "MCUR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
UHRF1BP1--MCUR1 HAVANA mRNA 27286 42100 . + . FI_gene_label "MCUR1^ENSG00000050393.11" ; ID "UHRF1BP1--MCUR1^ENST00000379170.8" ; Parent "UHRF1BP1--MCUR1^MCUR1^ENSG00000050393.11" ; ccdsid "CCDS35495.1" ; exon_id "ENSE00003699721.1" ; exon_number 1 ; gene_id "UHRF1BP1--MCUR1^MCUR1^ENSG00000050393.11" ; gene_name MCUR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014279.3" ; havana_transcript "OTTHUMT00000039909.3" ; hgnc_id "HGNC:21097" ; level 2 ; orig_coord_info "chr6,13814015,13814429,-" ; protein_id "ENSP00000368468.3" ; tag basic appris_principal_1 CCDS ; transcript_id "UHRF1BP1--MCUR1^ENST00000379170.8" ; transcript_name "MCUR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF1BP1--RANBP9 HAVANA gene 27286 43903 . + . FI_gene_label "RANBP9^ENSG00000010017.13" ; ID "UHRF1BP1--RANBP9^RANBP9^ENSG00000010017.13" ; ccdsid "CCDS4529.1" ; exon_id "ENSE00001815244.2" ; exon_number 1 ; gene_id "UHRF1BP1--RANBP9^RANBP9^ENSG00000010017.13" ; gene_name RANBP9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015642.2" ; havana_transcript "OTTHUMT00000042373.2" ; hgnc_id "HGNC:13727" ; level 2 ; orig_coord_info "chr6,13710935,13711505,-" ; protein_id "ENSP00000011619.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UHRF1BP1--RANBP9^ENST00000011619.6" ; transcript_name "RANBP9-201" ; transcript_support_level 1 ; transcript_type protein_coding
UHRF1BP1--RANBP9 HAVANA mRNA 27286 43903 . + . FI_gene_label "RANBP9^ENSG00000010017.13" ; ID "UHRF1BP1--RANBP9^ENST00000011619.6" ; Parent "UHRF1BP1--RANBP9^RANBP9^ENSG00000010017.13" ; ccdsid "CCDS4529.1" ; exon_id "ENSE00001815244.2" ; exon_number 1 ; gene_id "UHRF1BP1--RANBP9^RANBP9^ENSG00000010017.13" ; gene_name RANBP9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015642.2" ; havana_transcript "OTTHUMT00000042373.2" ; hgnc_id "HGNC:13727" ; level 2 ; orig_coord_info "chr6,13710935,13711505,-" ; protein_id "ENSP00000011619.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UHRF1BP1--RANBP9^ENST00000011619.6" ; transcript_name "RANBP9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF1BP1--RANBP9 HAVANA gene 1069 22012 . + . FI_gene_label "UHRF1BP1^ENSG00000065060.17" ; ID "UHRF1BP1--RANBP9^UHRF1BP1^ENSG00000065060.17" ; ccdsid "CCDS43455.1" ; exon_id "ENSE00001536064.4" ; exon_number 1 ; gene_id "UHRF1BP1--RANBP9^UHRF1BP1^ENSG00000065060.17" ; gene_name UHRF1BP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014557.2" ; havana_transcript "OTTHUMT00000040260.2" ; hgnc_id "HGNC:21216" ; level 2 ; orig_coord_info "chr6,34792251,34792294,+" ; protein_id "ENSP00000192788.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UHRF1BP1--RANBP9^ENST00000192788.6" ; transcript_name "UHRF1BP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
UHRF1BP1--RANBP9 HAVANA mRNA 1069 22012 . + . FI_gene_label "UHRF1BP1^ENSG00000065060.17" ; ID "UHRF1BP1--RANBP9^ENST00000192788.6" ; Parent "UHRF1BP1--RANBP9^UHRF1BP1^ENSG00000065060.17" ; ccdsid "CCDS43455.1" ; exon_id "ENSE00001536064.4" ; exon_number 1 ; gene_id "UHRF1BP1--RANBP9^UHRF1BP1^ENSG00000065060.17" ; gene_name UHRF1BP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014557.2" ; havana_transcript "OTTHUMT00000040260.2" ; hgnc_id "HGNC:21216" ; level 2 ; orig_coord_info "chr6,34792251,34792294,+" ; protein_id "ENSP00000192788.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UHRF1BP1--RANBP9^ENST00000192788.6" ; transcript_name "UHRF1BP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZFAND3--PXT1 HAVANA gene 1001 14105 . + . FI_gene_label "ZFAND3^ENSG00000156639.12" ; ID "ZFAND3--PXT1^ZFAND3^ENSG00000156639.12" ; ccdsid "CCDS4836.1" ; exon_id "ENSE00001460453.3" ; exon_number 1 ; gene_id "ZFAND3--PXT1^ZFAND3^ENSG00000156639.12" ; gene_name ZFAND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014629.7" ; havana_transcript "OTTHUMT00000040424.4" ; hgnc_id "HGNC:18019" ; level 2 ; orig_coord_info "chr6,37819946,37820016,+" ; protein_id "ENSP00000287218.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFAND3--PXT1^ENST00000287218.9" ; transcript_name "ZFAND3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZFAND3--PXT1 HAVANA mRNA 1001 14105 . + . FI_gene_label "ZFAND3^ENSG00000156639.12" ; ID "ZFAND3--PXT1^ENST00000287218.9" ; Parent "ZFAND3--PXT1^ZFAND3^ENSG00000156639.12" ; ccdsid "CCDS4836.1" ; exon_id "ENSE00001460453.3" ; exon_number 1 ; gene_id "ZFAND3--PXT1^ZFAND3^ENSG00000156639.12" ; gene_name ZFAND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014629.7" ; havana_transcript "OTTHUMT00000040424.4" ; hgnc_id "HGNC:18019" ; level 2 ; orig_coord_info "chr6,37819946,37820016,+" ; protein_id "ENSP00000287218.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFAND3--PXT1^ENST00000287218.9" ; transcript_name "ZFAND3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZFAND3--PXT1 HAVANA gene 17106 23178 . + . FI_gene_label "PXT1^ENSG00000179165.11" ; ID "ZFAND3--PXT1^PXT1^ENSG00000179165.11" ; ccdsid "CCDS4820.2" ; exon_id "ENSE00001763444.1" ; exon_number 3 ; gene_id "ZFAND3--PXT1^PXT1^ENSG00000179165.11" ; gene_name PXT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159815.4" ; havana_transcript "OTTHUMT00000357516.3" ; hgnc_id "HGNC:18312" ; level 1 ; orig_coord_info "chr6,36425914,36426082,-" ; protein_id "ENSP00000419944.1" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "ZFAND3--PXT1^ENST00000454782.3" ; transcript_name "PXT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZFAND3--PXT1 HAVANA mRNA 17106 23178 . + . FI_gene_label "PXT1^ENSG00000179165.11" ; ID "ZFAND3--PXT1^ENST00000454782.3" ; Parent "ZFAND3--PXT1^PXT1^ENSG00000179165.11" ; ccdsid "CCDS4820.2" ; exon_id "ENSE00001763444.1" ; exon_number 3 ; gene_id "ZFAND3--PXT1^PXT1^ENSG00000179165.11" ; gene_name PXT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159815.4" ; havana_transcript "OTTHUMT00000357516.3" ; hgnc_id "HGNC:18312" ; level 1 ; orig_coord_info "chr6,36425914,36426082,-" ; protein_id "ENSP00000419944.1" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "ZFAND3--PXT1^ENST00000454782.3" ; transcript_name "PXT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC009055.1--ASIC2 HAVANA gene 1001 5781 . + . FI_gene_label "AC009055.1^ENSG00000260364.1" ; ID "AC009055.1--ASIC2^AC009055.1^ENSG00000260364.1" ; exon_id "ENSE00002627183.1" ; exon_number 1 ; gene_id "AC009055.1--ASIC2^AC009055.1^ENSG00000260364.1" ; gene_name "AC009055.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172811.2" ; havana_transcript "OTTHUMT00000420600.2" ; level 2 ; orig_coord_info "chr16,65233056,65233180,+" ; tag basic ; transcript_id "AC009055.1--ASIC2^ENST00000562656.1" ; transcript_name "AC009055.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
AC009055.1--ASIC2 HAVANA RNA 1001 5781 . + . FI_gene_label "AC009055.1^ENSG00000260364.1" ; ID "AC009055.1--ASIC2^ENST00000562656.1" ; Parent "AC009055.1--ASIC2^AC009055.1^ENSG00000260364.1" ; exon_id "ENSE00002627183.1" ; exon_number 1 ; gene_id "AC009055.1--ASIC2^AC009055.1^ENSG00000260364.1" ; gene_name "AC009055.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172811.2" ; havana_transcript "OTTHUMT00000420600.2" ; level 2 ; orig_coord_info "chr16,65233056,65233180,+" ; tag basic ; transcript_id "AC009055.1--ASIC2^ENST00000562656.1" ; transcript_name "AC009055.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC110079.1--SEPTIN14 HAVANA gene 1001 13515 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "AC110079.1--SEPTIN14^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "AC110079.1--SEPTIN14^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "AC110079.1--SEPTIN14^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
AC110079.1--SEPTIN14 HAVANA RNA 1001 13515 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "AC110079.1--SEPTIN14^ENST00000567913.2" ; Parent "AC110079.1--SEPTIN14^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "AC110079.1--SEPTIN14^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "AC110079.1--SEPTIN14^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
AL359382.2--PXT1 HAVANA gene 1001 2319 . + . FI_gene_label "AL359382.2^ENSG00000287473.1" ; ID "AL359382.2--PXT1^AL359382.2^ENSG00000287473.1" ; exon_id "ENSE00003857738.1" ; exon_number 1 ; gene_id "AL359382.2--PXT1^AL359382.2^ENSG00000287473.1" ; gene_name "AL359382.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194749.1" ; havana_transcript "OTTHUMT00000521512.1" ; level 2 ; orig_coord_info "chr6,148156907,148157084,-" ; tag basic TAGENE ; transcript_id "AL359382.2--PXT1^ENST00000652976.1" ; transcript_name "AL359382.2-201" ; transcript_type lncRNA
AL359382.2--PXT1 HAVANA RNA 1001 2319 . + . FI_gene_label "AL359382.2^ENSG00000287473.1" ; ID "AL359382.2--PXT1^ENST00000652976.1" ; Parent "AL359382.2--PXT1^AL359382.2^ENSG00000287473.1" ; exon_id "ENSE00003857738.1" ; exon_number 1 ; gene_id "AL359382.2--PXT1^AL359382.2^ENSG00000287473.1" ; gene_name "AL359382.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194749.1" ; havana_transcript "OTTHUMT00000521512.1" ; level 2 ; orig_coord_info "chr6,148156907,148157084,-" ; tag basic TAGENE ; transcript_id "AL359382.2--PXT1^ENST00000652976.1" ; transcript_name "AL359382.2-201" ; transcript_type lncRNA
L1 and L2 created:
AL513164.1--PXT1 HAVANA gene 1001 4311 . + . FI_gene_label "AL513164.1^ENSG00000224658.1" ; ID "AL513164.1--PXT1^AL513164.1^ENSG00000224658.1" ; exon_id "ENSE00001632543.1" ; exon_number 1 ; gene_id "AL513164.1--PXT1^AL513164.1^ENSG00000224658.1" ; gene_name "AL513164.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000015772.1" ; havana_transcript "OTTHUMT00000042618.1" ; level 2 ; orig_coord_info "chr6,148283350,148283408,-" ; tag basic ; transcript_id "AL513164.1--PXT1^ENST00000423268.1" ; transcript_name "AL513164.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
AL513164.1--PXT1 HAVANA RNA 1001 4311 . + . FI_gene_label "AL513164.1^ENSG00000224658.1" ; ID "AL513164.1--PXT1^ENST00000423268.1" ; Parent "AL513164.1--PXT1^AL513164.1^ENSG00000224658.1" ; exon_id "ENSE00001632543.1" ; exon_number 1 ; gene_id "AL513164.1--PXT1^AL513164.1^ENSG00000224658.1" ; gene_name "AL513164.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000015772.1" ; havana_transcript "OTTHUMT00000042618.1" ; level 2 ; orig_coord_info "chr6,148283350,148283408,-" ; tag basic ; transcript_id "AL513164.1--PXT1^ENST00000423268.1" ; transcript_name "AL513164.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AL591428.1--CLVS2 HAVANA gene 1001 7235 . + . FI_gene_label "AL591428.1^ENSG00000285652.1" ; ID "AL591428.1--CLVS2^AL591428.1^ENSG00000285652.1" ; exon_id "ENSE00003833426.1" ; exon_number 1 ; gene_id "AL591428.1--CLVS2^AL591428.1^ENSG00000285652.1" ; gene_name "AL591428.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192860.1" ; havana_transcript "OTTHUMT00000499404.1" ; level 2 ; orig_coord_info "chr6,122995928,122996061,-" ; tag basic ; transcript_id "AL591428.1--CLVS2^ENST00000649113.1" ; transcript_name "AL591428.1-201" ; transcript_type lncRNA
AL591428.1--CLVS2 HAVANA RNA 1001 7235 . + . FI_gene_label "AL591428.1^ENSG00000285652.1" ; ID "AL591428.1--CLVS2^ENST00000649113.1" ; Parent "AL591428.1--CLVS2^AL591428.1^ENSG00000285652.1" ; exon_id "ENSE00003833426.1" ; exon_number 1 ; gene_id "AL591428.1--CLVS2^AL591428.1^ENSG00000285652.1" ; gene_name "AL591428.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192860.1" ; havana_transcript "OTTHUMT00000499404.1" ; level 2 ; orig_coord_info "chr6,122995928,122996061,-" ; tag basic ; transcript_id "AL591428.1--CLVS2^ENST00000649113.1" ; transcript_name "AL591428.1-201" ; transcript_type lncRNA
L1 and L2 created:
AL592436.1--VANGL1 ENSEMBL gene 1001 1134 . + . FI_gene_label "AL592436.1^ENSG00000207502.1" ; ID "AL592436.1--VANGL1^AL592436.1^ENSG00000207502.1" ; exon_id "ENSE00001499779.1" ; exon_number 1 ; gene_id "AL592436.1--VANGL1^AL592436.1^ENSG00000207502.1" ; gene_name "AL592436.1" ; gene_type snoRNA ; level 3 ; orig_coord_info "chr1,115621872,115622005,-" ; tag basic ; transcript_id "AL592436.1--VANGL1^ENST00000384771.1" ; transcript_name "AL592436.1-201" ; transcript_support_level NA ; transcript_type snoRNA
AL592436.1--VANGL1 ENSEMBL RNA 1001 1134 . + . FI_gene_label "AL592436.1^ENSG00000207502.1" ; ID "AL592436.1--VANGL1^ENST00000384771.1" ; Parent "AL592436.1--VANGL1^AL592436.1^ENSG00000207502.1" ; exon_id "ENSE00001499779.1" ; exon_number 1 ; gene_id "AL592436.1--VANGL1^AL592436.1^ENSG00000207502.1" ; gene_name "AL592436.1" ; gene_type snoRNA ; level 3 ; orig_coord_info "chr1,115621872,115622005,-" ; tag basic ; transcript_id "AL592436.1--VANGL1^ENST00000384771.1" ; transcript_name "AL592436.1-201" ; transcript_support_level NA ; transcript_type snoRNA
L1 and L2 created:
CICP16--SEPTIN14 HAVANA gene 1001 3813 . + . FI_gene_label "CICP16^ENSG00000248213.3" ; ID "CICP16--SEPTIN14^CICP16^ENSG00000248213.3" ; exon_id "ENSE00002044878.2" ; exon_number 1 ; gene_id "CICP16--SEPTIN14^CICP16^ENSG00000248213.3" ; gene_name CICP16 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000161208.2" ; havana_transcript "OTTHUMT00000364169.2" ; hgnc_id "HGNC:38550" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr4,118635970,118638782,-" ; tag pseudo_consens basic ; transcript_id "CICP16--SEPTIN14^ENST00000502609.2" ; transcript_name "CICP16-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
CICP16--SEPTIN14 HAVANA RNA 1001 3813 . + . FI_gene_label "CICP16^ENSG00000248213.3" ; ID "CICP16--SEPTIN14^ENST00000502609.2" ; Parent "CICP16--SEPTIN14^CICP16^ENSG00000248213.3" ; exon_id "ENSE00002044878.2" ; exon_number 1 ; gene_id "CICP16--SEPTIN14^CICP16^ENSG00000248213.3" ; gene_name CICP16 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000161208.2" ; havana_transcript "OTTHUMT00000364169.2" ; hgnc_id "HGNC:38550" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr4,118635970,118638782,-" ; tag pseudo_consens basic ; transcript_id "CICP16--SEPTIN14^ENST00000502609.2" ; transcript_name "CICP16-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
FBXO25--AC240565.1 HAVANA gene 26102 34357 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "FBXO25--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
FBXO25--AC240565.1 HAVANA RNA 26102 34357 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "FBXO25--AC240565.1^ENST00000624936.2" ; Parent "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "FBXO25--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
GTF2IP4--SBDSP1 HAVANA gene 27798 31348 . + . FI_gene_label "SBDSP1^ENSG00000225648.5" ; ID "GTF2IP4--SBDSP1^SBDSP1^ENSG00000225648.5" ; exon_id "ENSE00001704894.1" ; exon_number 1 ; gene_id "GTF2IP4--SBDSP1^SBDSP1^ENSG00000225648.5" ; gene_name SBDSP1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000157063.3" ; havana_transcript "OTTHUMT00000347337.2" ; hgnc_id "HGNC:21646" ; level 2 ; orig_coord_info "chr7,72829490,72829783,+" ; transcript_id "GTF2IP4--SBDSP1^ENST00000415772.5" ; transcript_name "SBDSP1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
GTF2IP4--SBDSP1 HAVANA RNA 27798 31348 . + . FI_gene_label "SBDSP1^ENSG00000225648.5" ; ID "GTF2IP4--SBDSP1^ENST00000415772.5" ; Parent "GTF2IP4--SBDSP1^SBDSP1^ENSG00000225648.5" ; exon_id "ENSE00001704894.1" ; exon_number 1 ; gene_id "GTF2IP4--SBDSP1^SBDSP1^ENSG00000225648.5" ; gene_name SBDSP1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000157063.3" ; havana_transcript "OTTHUMT00000347337.2" ; hgnc_id "HGNC:21646" ; level 2 ; orig_coord_info "chr7,72829490,72829783,+" ; transcript_id "GTF2IP4--SBDSP1^ENST00000415772.5" ; transcript_name "SBDSP1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
L1 and L2 created:
GTF2IP4--SBDSP1 HAVANA gene 2407 22890 . + . FI_gene_label "GTF2IP4^ENSG00000233369.7" ; ID "GTF2IP4--SBDSP1^GTF2IP4^ENSG00000233369.7" ; exon_id "ENSE00002456396.1" ; exon_number 1 ; gene_id "GTF2IP4--SBDSP1^GTF2IP4^ENSG00000233369.7" ; gene_name GTF2IP4 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000156702.3" ; havana_transcript "OTTHUMT00000345352.2" ; hgnc_id "HGNC:51716" ; level 2 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr7,73175415,73175525,+" ; tag basic ; transcript_id "GTF2IP4--SBDSP1^ENST00000453092.3" ; transcript_name "GTF2IP4-201" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
GTF2IP4--SBDSP1 HAVANA RNA 2407 22890 . + . FI_gene_label "GTF2IP4^ENSG00000233369.7" ; ID "GTF2IP4--SBDSP1^ENST00000453092.3" ; Parent "GTF2IP4--SBDSP1^GTF2IP4^ENSG00000233369.7" ; exon_id "ENSE00002456396.1" ; exon_number 1 ; gene_id "GTF2IP4--SBDSP1^GTF2IP4^ENSG00000233369.7" ; gene_name GTF2IP4 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000156702.3" ; havana_transcript "OTTHUMT00000345352.2" ; hgnc_id "HGNC:51716" ; level 2 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr7,73175415,73175525,+" ; tag basic ; transcript_id "GTF2IP4--SBDSP1^ENST00000453092.3" ; transcript_name "GTF2IP4-201" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
L1 and L2 created:
RBFOX2--GOLGA6L3 HAVANA gene 32011 38019 . + . FI_gene_label "GOLGA6L3^ENSG00000188388.10" ; ID "RBFOX2--GOLGA6L3^GOLGA6L3^ENSG00000188388.10" ; exon_id "ENSE00002518302.1" ; exon_number 1 ; gene_id "RBFOX2--GOLGA6L3^GOLGA6L3^ENSG00000188388.10" ; gene_name GOLGA6L3 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000163478.1" ; havana_transcript "OTTHUMT00000373669.1" ; hgnc_id "HGNC:37441" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr15,85240472,85240555,+" ; tag pseudo_consens basic ; transcript_id "RBFOX2--GOLGA6L3^ENST00000507199.1" ; transcript_name "GOLGA6L3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
RBFOX2--GOLGA6L3 HAVANA RNA 32011 38019 . + . FI_gene_label "GOLGA6L3^ENSG00000188388.10" ; ID "RBFOX2--GOLGA6L3^ENST00000507199.1" ; Parent "RBFOX2--GOLGA6L3^GOLGA6L3^ENSG00000188388.10" ; exon_id "ENSE00002518302.1" ; exon_number 1 ; gene_id "RBFOX2--GOLGA6L3^GOLGA6L3^ENSG00000188388.10" ; gene_name GOLGA6L3 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000163478.1" ; havana_transcript "OTTHUMT00000373669.1" ; hgnc_id "HGNC:37441" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr15,85240472,85240555,+" ; tag pseudo_consens basic ; transcript_id "RBFOX2--GOLGA6L3^ENST00000507199.1" ; transcript_name "GOLGA6L3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
RN7SL420P--VANGL1 ENSEMBL gene 1001 1298 . + . FI_gene_label "RN7SL420P^ENSG00000239984.3" ; ID "RN7SL420P--VANGL1^RN7SL420P^ENSG00000239984.3" ; exon_id "ENSE00001823505.3" ; exon_number 1 ; gene_id "RN7SL420P--VANGL1^RN7SL420P^ENSG00000239984.3" ; gene_name RN7SL420P ; gene_type misc_RNA ; hgnc_id "HGNC:46436" ; level 3 ; orig_coord_info "chr1,115606471,115606768,+" ; tag basic ; transcript_id "RN7SL420P--VANGL1^ENST00000463843.3" ; transcript_name "RN7SL420P-201" ; transcript_support_level NA ; transcript_type misc_RNA
RN7SL420P--VANGL1 ENSEMBL RNA 1001 1298 . + . FI_gene_label "RN7SL420P^ENSG00000239984.3" ; ID "RN7SL420P--VANGL1^ENST00000463843.3" ; Parent "RN7SL420P--VANGL1^RN7SL420P^ENSG00000239984.3" ; exon_id "ENSE00001823505.3" ; exon_number 1 ; gene_id "RN7SL420P--VANGL1^RN7SL420P^ENSG00000239984.3" ; gene_name RN7SL420P ; gene_type misc_RNA ; hgnc_id "HGNC:46436" ; level 3 ; orig_coord_info "chr1,115606471,115606768,+" ; tag basic ; transcript_id "RN7SL420P--VANGL1^ENST00000463843.3" ; transcript_name "RN7SL420P-201" ; transcript_support_level NA ; transcript_type misc_RNA
L1 and L2 created:
SYNE1--CCDC162P HAVANA gene 228987 232259 . + . FI_gene_label "CCDC162P^ENSG00000203799.13" ; ID "SYNE1--CCDC162P^CCDC162P^ENSG00000203799.13" ; exon_id "ENSE00001532617.2" ; exon_number 1 ; gene_id "SYNE1--CCDC162P^CCDC162P^ENSG00000203799.13" ; gene_name CCDC162P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000015342.9" ; havana_transcript "OTTHUMT00000473434.1" ; hgnc_id "HGNC:21565" ; level 2 ; orig_coord_info "chr6,109338527,109338615,+" ; tag nested_454_RNA_Seq_supported ; transcript_id "SYNE1--CCDC162P^ENST00000368965.3" ; transcript_name "CCDC162P-201" ; transcript_support_level 5 ; transcript_type retained_intron
SYNE1--CCDC162P HAVANA RNA 228987 232259 . + . FI_gene_label "CCDC162P^ENSG00000203799.13" ; ID "SYNE1--CCDC162P^ENST00000368965.3" ; Parent "SYNE1--CCDC162P^CCDC162P^ENSG00000203799.13" ; exon_id "ENSE00001532617.2" ; exon_number 1 ; gene_id "SYNE1--CCDC162P^CCDC162P^ENSG00000203799.13" ; gene_name CCDC162P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000015342.9" ; havana_transcript "OTTHUMT00000473434.1" ; hgnc_id "HGNC:21565" ; level 2 ; orig_coord_info "chr6,109338527,109338615,+" ; tag nested_454_RNA_Seq_supported ; transcript_id "SYNE1--CCDC162P^ENST00000368965.3" ; transcript_name "CCDC162P-201" ; transcript_support_level 5 ; transcript_type retained_intron
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TPTE--BAGE2 HAVANA gene 27330 39533 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "TPTE--BAGE2^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
TPTE--BAGE2 HAVANA RNA 27330 39533 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "TPTE--BAGE2^ENST00000470054.5" ; Parent "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "TPTE--BAGE2^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
UBE2Q2P1--RBFOX2 HAVANA gene 1422 13175 . + . FI_gene_label "UBE2Q2P1^ENSG00000189136.9" ; ID "UBE2Q2P1--RBFOX2^UBE2Q2P1^ENSG00000189136.9" ; exon_id "ENSE00002026145.1" ; exon_number 1 ; gene_id "UBE2Q2P1--RBFOX2^UBE2Q2P1^ENSG00000189136.9" ; gene_name UBE2Q2P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000148662.3" ; havana_transcript "OTTHUMT00000308970.2" ; hgnc_id "HGNC:37439" ; level 2 ; orig_coord_info "chr15,84569505,84570795,-" ; transcript_id "UBE2Q2P1--RBFOX2^ENST00000339094.5" ; transcript_name "UBE2Q2P1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
UBE2Q2P1--RBFOX2 HAVANA RNA 1422 13175 . + . FI_gene_label "UBE2Q2P1^ENSG00000189136.9" ; ID "UBE2Q2P1--RBFOX2^ENST00000339094.5" ; Parent "UBE2Q2P1--RBFOX2^UBE2Q2P1^ENSG00000189136.9" ; exon_id "ENSE00002026145.1" ; exon_number 1 ; gene_id "UBE2Q2P1--RBFOX2^UBE2Q2P1^ENSG00000189136.9" ; gene_name UBE2Q2P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000148662.3" ; havana_transcript "OTTHUMT00000308970.2" ; hgnc_id "HGNC:37439" ; level 2 ; orig_coord_info "chr15,84569505,84570795,-" ; transcript_id "UBE2Q2P1--RBFOX2^ENST00000339094.5" ; transcript_name "UBE2Q2P1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
872 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 1 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1833 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 86 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
Lets remove isoform CARMIL1--PLEKHG1^ENST00000643692.1
1 identical isoforms removed
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed