Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/4e956a0a8b9d9cde85368043eb6f69/659_8h-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/c82fd63eb0f6dc445c7a4dd4350e40/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/c82fd63eb0f6dc445c7a4dd4350e40/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
paired = 30122
unpaired = 4507
MERGED PAIRED END READS = 30122
MATES PROCESSED = 64751
TOTAL READS     = 34629
DISTINCT READS  = 8000
DISTINCT COUNTS = 99
MAX COUNT       = 3131
COUNTS OF 1     = 5470
MAX TERMS       = 40
OBSERVED COUNTS (3132)
1	5470
2	1087
3	369
4	226
5	149
6	127
7	86
8	66
9	40
10	43
11	32
12	25
13	32
14	14
15	22
16	18
17	15
18	13
19	9
20	5
21	9
22	7
23	10
24	6
25	4
26	7
27	1
28	7
29	5
30	3
31	4
32	1
33	1
34	3
35	2
36	1
37	1
38	2
39	1
40	2
41	1
43	2
44	2
45	1
46	1
47	2
48	1
49	4
50	3
52	1
59	1
61	3
62	1
63	1
65	1
66	1
67	1
68	1
69	2
72	3
73	1
74	1
76	2
82	3
83	1
88	1
93	1
94	1
99	1
100	1
105	1
107	1
109	1
113	1
119	1
130	1
136	1
138	1
145	1
149	1
157	1
159	1
161	1
162	1
163	1
168	1
183	1
195	1
279	1
291	1
323	1
327	1
335	1
356	1
478	1
1349	1
1789	1
2627	1
3131	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.._.............._.........._..._......................._...............
..........._........._....._........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]