.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (FFPE_V4_0001_RNA_0003_B23MHV2LT4_2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/e5070dc3a0214bba86abc9dcf19904/.command.sh
Size: 199 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (FFPE_V4_0001_RNA_0003_B23MHV2LT4_2)
Attempt

Content

#!/bin/bash -euo pipefail
set -euxo pipefail

seqtool saturation -region 'chr20' \
    "FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.md.bam" > FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_full_bam_saturation_values.txt