Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/f9e2d3b1e0b4f73bd83e2bf6c1b690/659_SP-T1-TRNA-1_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/36de65b51283b9286f43767e5d80aa/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/36de65b51283b9286f43767e5d80aa/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory