Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/6e06dc2a9c9352a81bb9d7120508ca/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/df9810f41a37f074d5c9c86ba6f599/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/6e06dc2a9c9352a81bb9d7120508ca/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/0508594000c2359eddbe03f00fbe2d/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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