File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/9602cbd1f5a8afe6784f353c54c5d4/.command.log
Size
7.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bTo-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/5ee7a844bf869703736f9747b7118d/659_bTo-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/9602cbd1f5a8afe6784f353c54c5d4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/54a54349e7daef2c61c707fa4f63b8/659_bTo-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/9602cbd1f5a8afe6784f353c54c5d4/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
ETV6--RASA3
starfusion
arriba
ANKRD46--STK3
starfusion
arriba
UBE2O--AANAT
starfusion
arriba
FHOD3--KIAA1328
starfusion
arriba
RIOK3--LINC01894
starfusion
ARPC3--LINC02827
starfusion
CDV3--MT-RNR2
starfusion
TLK2P1--AC110079.1
starfusion
TOPORS--TJP2
starfusion
UST--TMTC2
starfusion
arriba
RPSAP52--HMGA2
starfusion
NF1--SEPTIN4-AS1
starfusion
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGC3
arriba
AKAP12--PHBP1
arriba
AKAP12--ULBP3
arriba
AC092807.3--DDAH1
arriba
STX16--NPEPL1
arriba
TMED7--TICAM2
arriba
LANCL2--LANCL2
arriba
AC010904.1--ZC3H7B
arriba
AC013460.1--ZC3H7B
arriba
TAF4B--B4GALT6
arriba

  0%|          | 0/31 [00:00<?, ?it/s]
Processing ETV6--RASA3:   0%|          | 0/31 [00:00<?, ?it/s]
Processing ETV6--RASA3:   3%|▎         | 1/31 [00:00<00:03,  9.24it/s]
Processing ANKRD46--STK3:   3%|▎         | 1/31 [00:00<00:03,  9.24it/s]
Processing ANKRD46--STK3:   6%|▋         | 2/31 [00:00<00:03,  9.47it/s]
Processing UBE2O--AANAT:   6%|▋         | 2/31 [00:00<00:03,  9.47it/s] 
Processing UBE2O--AANAT:  10%|▉         | 3/31 [00:00<00:02,  9.55it/s]
Processing FHOD3--KIAA1328:  10%|▉         | 3/31 [00:00<00:02,  9.55it/s]
Processing FHOD3--KIAA1328:  13%|█▎        | 4/31 [00:00<00:02,  9.58it/s]
Processing RIOK3--LINC01894:  13%|█▎        | 4/31 [00:00<00:02,  9.58it/s]
Processing RIOK3--LINC01894:  16%|█▌        | 5/31 [00:00<00:02,  9.60it/s]
Processing ARPC3--LINC02827:  16%|█▌        | 5/31 [00:00<00:02,  9.60it/s]
Processing ARPC3--LINC02827:  19%|█▉        | 6/31 [00:00<00:02,  9.62it/s]
Processing CDV3--MT-RNR2:  19%|█▉        | 6/31 [00:00<00:02,  9.62it/s]   
Processing CDV3--MT-RNR2:  23%|██▎       | 7/31 [00:00<00:02,  9.63it/s]
Processing TLK2P1--AC110079.1:  23%|██▎       | 7/31 [00:00<00:02,  9.63it/s]
Processing TLK2P1--AC110079.1:  26%|██▌       | 8/31 [00:00<00:02,  9.63it/s]
Processing TOPORS--TJP2:  26%|██▌       | 8/31 [00:00<00:02,  9.63it/s]      
Processing TOPORS--TJP2:  29%|██▉       | 9/31 [00:00<00:02,  9.64it/s]
Processing UST--TMTC2:  29%|██▉       | 9/31 [00:00<00:02,  9.64it/s]  
Processing UST--TMTC2:  32%|███▏      | 10/31 [00:01<00:02,  9.64it/s]
Processing RPSAP52--HMGA2:  32%|███▏      | 10/31 [00:01<00:02,  9.64it/s]
Processing RPSAP52--HMGA2:  35%|███▌      | 11/31 [00:01<00:02,  9.64it/s]
Processing NF1--SEPTIN4-AS1:  35%|███▌      | 11/31 [00:01<00:02,  9.64it/s]
Processing NF1--SEPTIN4-AS1:  39%|███▊      | 12/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  39%|███▊      | 12/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  42%|████▏     | 13/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC5:  42%|████▏     | 13/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC5:  45%|████▌     | 14/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  45%|████▌     | 14/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  48%|████▊     | 15/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC4:  48%|████▊     | 15/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC4:  52%|█████▏    | 16/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  52%|█████▏    | 16/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  55%|█████▍    | 17/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  55%|█████▍    | 17/31 [00:01<00:01,  9.64it/s] 
Processing PCDHGB2--PCDHGA9:  58%|█████▊    | 18/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  58%|█████▊    | 18/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  61%|██████▏   | 19/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  61%|██████▏   | 19/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  65%|██████▍   | 20/31 [00:02<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  65%|██████▍   | 20/31 [00:02<00:01,  9.64it/s] 
Processing PCDHGB2--PCDHGB7:  68%|██████▊   | 21/31 [00:02<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  68%|██████▊   | 21/31 [00:02<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  71%|███████   | 22/31 [00:02<00:00,  9.64it/s]
Processing AKAP12--PHBP1:  71%|███████   | 22/31 [00:02<00:00,  9.64it/s]   
Processing AKAP12--PHBP1:  74%|███████▍  | 23/31 [00:02<00:00,  9.64it/s]
Processing AKAP12--ULBP3:  74%|███████▍  | 23/31 [00:02<00:00,  9.64it/s]
Processing AKAP12--ULBP3:  77%|███████▋  | 24/31 [00:02<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  77%|███████▋  | 24/31 [00:02<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  81%|████████  | 25/31 [00:02<00:00,  9.64it/s]
Processing STX16--NPEPL1:  81%|████████  | 25/31 [00:02<00:00,  9.64it/s]    
Processing STX16--NPEPL1:  84%|████████▍ | 26/31 [00:02<00:00,  9.64it/s]
Processing TMED7--TICAM2:  84%|████████▍ | 26/31 [00:02<00:00,  9.64it/s]
Processing TMED7--TICAM2:  87%|████████▋ | 27/31 [00:02<00:00,  9.65it/s]
Processing LANCL2--LANCL2:  87%|████████▋ | 27/31 [00:02<00:00,  9.65it/s]
Processing LANCL2--LANCL2:  90%|█████████ | 28/31 [00:02<00:00,  9.64it/s]
Processing AC010904.1--ZC3H7B:  90%|█████████ | 28/31 [00:02<00:00,  9.64it/s]
Processing AC010904.1--ZC3H7B:  94%|█████████▎| 29/31 [00:03<00:00,  9.64it/s]
Processing AC013460.1--ZC3H7B:  94%|█████████▎| 29/31 [00:03<00:00,  9.64it/s]
Processing AC013460.1--ZC3H7B:  97%|█████████▋| 30/31 [00:03<00:00,  9.64it/s]
Processing TAF4B--B4GALT6:  97%|█████████▋| 30/31 [00:03<00:00,  9.64it/s]    
Processing TAF4B--B4GALT6: 100%|██████████| 31/31 [00:03<00:00,  9.64it/s]
Processing TAF4B--B4GALT6: 100%|██████████| 31/31 [00:03<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory