[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	316540054
Known Splicing Events:	313903304
Partial Novel Splicing Events:	1294170
Novel Splicing Events:	1224500
Filtered Splicing Events:	118080

Total splicing  Junctions:	630647
Known Splicing Junctions:	287029
Partial Novel Splicing Junctions:	168678
Novel Splicing Junctions:	174940

===================================================================
Create BED file ...
Create Interact file ...