Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/5a64a257a5cf40577d745a88720009/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/df9810f41a37f074d5c9c86ba6f599/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/5a64a257a5cf40577d745a88720009/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/0508594000c2359eddbe03f00fbe2d/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 344382169
[W::hts_idx_load3] The index file is older than the data file: 659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	344382169
Known Splicing Events:	340537978
Partial Novel Splicing Events:	1728090
Novel Splicing Events:	1964607
Filtered Splicing Events:	151494

Total splicing  Junctions:	630369
Known Splicing Junctions:	292025
Partial Novel Splicing Junctions:	175362
Novel Splicing Junctions:	162982

===================================================================
Create BED file ...
Create Interact file ...