Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/968755ecfaaf3b9b708c2d883ee78d/659_R1-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/ff14aa501ad3a771cf093b80101852/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/ff14aa501ad3a771cf093b80101852/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/552cecf39d199db652467e8de2b7a2/659_R1-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory