Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/e0d4fca38a8cbb7592bbf3a31f4d8e/fi_workdir/659_rd-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/df0907572f92103d73f2d7ba6ca56d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/df0907572f92103d73f2d7ba6ca56d/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 4075
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 4075
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:4075
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 1 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL591378.1--DMD HAVANA gene 8810 35448 . + . FI_gene_label "DMD^ENSG00000198947.17" ; ID "AL591378.1--DMD^DMD^ENSG00000198947.17" ; exon_id "ENSE00001478378.2" ; exon_number 1 ; gene_id "AL591378.1--DMD^DMD^ENSG00000198947.17" ; gene_name DMD ; gene_type protein_coding ; havana_gene "OTTHUMG00000021336.7" ; havana_transcript "OTTHUMT00000056183.1" ; hgnc_id "HGNC:2928" ; level 2 ; orig_coord_info "chrX,33339259,33339265,-" ; protein_id "ENSP00000288447.4" ; tag basic ; transcript_id "AL591378.1--DMD^ENST00000288447.9" ; transcript_name "DMD-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL591378.1--DMD HAVANA mRNA 8810 35448 . + . FI_gene_label "DMD^ENSG00000198947.17" ; ID "AL591378.1--DMD^ENST00000288447.9" ; Parent "AL591378.1--DMD^DMD^ENSG00000198947.17" ; exon_id "ENSE00001478378.2" ; exon_number 1 ; gene_id "AL591378.1--DMD^DMD^ENSG00000198947.17" ; gene_name DMD ; gene_type protein_coding ; havana_gene "OTTHUMG00000021336.7" ; havana_transcript "OTTHUMT00000056183.1" ; hgnc_id "HGNC:2928" ; level 2 ; orig_coord_info "chrX,33339259,33339265,-" ; protein_id "ENSP00000288447.4" ; tag basic ; transcript_id "AL591378.1--DMD^ENST00000288447.9" ; transcript_name "DMD-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^ENST00000239859.8" ; Parent "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^ENST00000317764.6" ; Parent "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NAB2--STAT6 HAVANA gene 1072 6651 . + . FI_gene_label "NAB2^ENSG00000166886.13" ; ID "NAB2--STAT6^NAB2^ENSG00000166886.13" ; ccdsid "CCDS8930.1" ; exon_id "ENSE00001107435.6" ; exon_number 1 ; gene_id "NAB2--STAT6^NAB2^ENSG00000166886.13" ; gene_name NAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171192.2" ; havana_transcript "OTTHUMT00000412222.2" ; hgnc_id "HGNC:7627" ; level 2 ; orig_coord_info "chr12,57089272,57089354,+" ; protein_id "ENSP00000300131.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NAB2--STAT6^ENST00000300131.8" ; transcript_name "NAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NAB2--STAT6 HAVANA mRNA 1072 6651 . + . FI_gene_label "NAB2^ENSG00000166886.13" ; ID "NAB2--STAT6^ENST00000300131.8" ; Parent "NAB2--STAT6^NAB2^ENSG00000166886.13" ; ccdsid "CCDS8930.1" ; exon_id "ENSE00001107435.6" ; exon_number 1 ; gene_id "NAB2--STAT6^NAB2^ENSG00000166886.13" ; gene_name NAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171192.2" ; havana_transcript "OTTHUMT00000412222.2" ; hgnc_id "HGNC:7627" ; level 2 ; orig_coord_info "chr12,57089272,57089354,+" ; protein_id "ENSP00000300131.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NAB2--STAT6^ENST00000300131.8" ; transcript_name "NAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NAB2--STAT6 HAVANA gene 11970 26679 . + . FI_gene_label "STAT6^ENSG00000166888.12" ; ID "NAB2--STAT6^STAT6^ENSG00000166888.12" ; ccdsid "CCDS8931.1" ; exon_id "ENSE00003275456.1" ; exon_number 2 ; gene_id "NAB2--STAT6^STAT6^ENSG00000166888.12" ; gene_name STAT6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171194.8" ; havana_transcript "OTTHUMT00000412248.4" ; hgnc_id "HGNC:11368" ; level 2 ; orig_coord_info "chr12,57108163,57108278,-" ; protein_id "ENSP00000300134.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "NAB2--STAT6^ENST00000300134.8" ; transcript_name "STAT6-201" ; transcript_support_level 1 ; transcript_type protein_coding
NAB2--STAT6 HAVANA mRNA 11970 26679 . + . FI_gene_label "STAT6^ENSG00000166888.12" ; ID "NAB2--STAT6^ENST00000300134.8" ; Parent "NAB2--STAT6^STAT6^ENSG00000166888.12" ; ccdsid "CCDS8931.1" ; exon_id "ENSE00003275456.1" ; exon_number 2 ; gene_id "NAB2--STAT6^STAT6^ENSG00000166888.12" ; gene_name STAT6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171194.8" ; havana_transcript "OTTHUMT00000412248.4" ; hgnc_id "HGNC:11368" ; level 2 ; orig_coord_info "chr12,57108163,57108278,-" ; protein_id "ENSP00000300134.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "NAB2--STAT6^ENST00000300134.8" ; transcript_name "STAT6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA7--PCDHA13 HAVANA gene 6923 15363 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA7--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA7--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA7--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA7--PCDHA13 HAVANA mRNA 6923 15363 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA7--PCDHA13^ENST00000289272.3" ; Parent "PCDHA7--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA7--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA7--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA7--PCDHA13 HAVANA gene 1001 3922 . + . FI_gene_label "PCDHA7^ENSG00000204963.6" ; ID "PCDHA7--PCDHA13^PCDHA7^ENSG00000204963.6" ; exon_id "ENSE00001519049.3" ; exon_number 1 ; gene_id "PCDHA7--PCDHA13^PCDHA7^ENSG00000204963.6" ; gene_name PCDHA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163371.4" ; havana_transcript "OTTHUMT00000477551.1" ; hgnc_id "HGNC:8673" ; level 2 ; orig_coord_info "chr5,140834384,140836750,+" ; protein_id "ENSP00000349344.5" ; tag basic ; transcript_id "PCDHA7--PCDHA13^ENST00000356878.5" ; transcript_name "PCDHA7-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA7--PCDHA13 HAVANA mRNA 1001 3922 . + . FI_gene_label "PCDHA7^ENSG00000204963.6" ; ID "PCDHA7--PCDHA13^ENST00000356878.5" ; Parent "PCDHA7--PCDHA13^PCDHA7^ENSG00000204963.6" ; exon_id "ENSE00001519049.3" ; exon_number 1 ; gene_id "PCDHA7--PCDHA13^PCDHA7^ENSG00000204963.6" ; gene_name PCDHA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163371.4" ; havana_transcript "OTTHUMT00000477551.1" ; hgnc_id "HGNC:8673" ; level 2 ; orig_coord_info "chr5,140834384,140836750,+" ; protein_id "ENSP00000349344.5" ; tag basic ; transcript_id "PCDHA7--PCDHA13^ENST00000356878.5" ; transcript_name "PCDHA7-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA7--PCDHAC1 HAVANA gene 6923 16938 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA7--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA7--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA7--PCDHAC1 HAVANA mRNA 6923 16938 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA7--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA7--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA7--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA7--PCDHAC1 HAVANA gene 1001 3922 . + . FI_gene_label "PCDHA7^ENSG00000204963.6" ; ID "PCDHA7--PCDHAC1^PCDHA7^ENSG00000204963.6" ; exon_id "ENSE00001519049.3" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC1^PCDHA7^ENSG00000204963.6" ; gene_name PCDHA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163371.4" ; havana_transcript "OTTHUMT00000477551.1" ; hgnc_id "HGNC:8673" ; level 2 ; orig_coord_info "chr5,140834384,140836750,+" ; protein_id "ENSP00000349344.5" ; tag basic ; transcript_id "PCDHA7--PCDHAC1^ENST00000356878.5" ; transcript_name "PCDHA7-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA7--PCDHAC1 HAVANA mRNA 1001 3922 . + . FI_gene_label "PCDHA7^ENSG00000204963.6" ; ID "PCDHA7--PCDHAC1^ENST00000356878.5" ; Parent "PCDHA7--PCDHAC1^PCDHA7^ENSG00000204963.6" ; exon_id "ENSE00001519049.3" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC1^PCDHA7^ENSG00000204963.6" ; gene_name PCDHA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163371.4" ; havana_transcript "OTTHUMT00000477551.1" ; hgnc_id "HGNC:8673" ; level 2 ; orig_coord_info "chr5,140834384,140836750,+" ; protein_id "ENSP00000349344.5" ; tag basic ; transcript_id "PCDHA7--PCDHAC1^ENST00000356878.5" ; transcript_name "PCDHA7-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA7--PCDHAC2 HAVANA gene 6929 17664 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA7--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA7--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA7--PCDHAC2 HAVANA mRNA 6929 17664 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA7--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA7--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA7--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA7--PCDHAC2 HAVANA gene 1001 3922 . + . FI_gene_label "PCDHA7^ENSG00000204963.6" ; ID "PCDHA7--PCDHAC2^PCDHA7^ENSG00000204963.6" ; exon_id "ENSE00001519049.3" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC2^PCDHA7^ENSG00000204963.6" ; gene_name PCDHA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163371.4" ; havana_transcript "OTTHUMT00000477551.1" ; hgnc_id "HGNC:8673" ; level 2 ; orig_coord_info "chr5,140834384,140836750,+" ; protein_id "ENSP00000349344.5" ; tag basic ; transcript_id "PCDHA7--PCDHAC2^ENST00000356878.5" ; transcript_name "PCDHA7-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA7--PCDHAC2 HAVANA mRNA 1001 3922 . + . FI_gene_label "PCDHA7^ENSG00000204963.6" ; ID "PCDHA7--PCDHAC2^ENST00000356878.5" ; Parent "PCDHA7--PCDHAC2^PCDHA7^ENSG00000204963.6" ; exon_id "ENSE00001519049.3" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC2^PCDHA7^ENSG00000204963.6" ; gene_name PCDHA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163371.4" ; havana_transcript "OTTHUMT00000477551.1" ; hgnc_id "HGNC:8673" ; level 2 ; orig_coord_info "chr5,140834384,140836750,+" ; protein_id "ENSP00000349344.5" ; tag basic ; transcript_id "PCDHA7--PCDHAC2^ENST00000356878.5" ; transcript_name "PCDHA7-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA10 HAVANA gene 8733 18186 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA10 HAVANA mRNA 8733 18186 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA10 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA10^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA10 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA10^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA10^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA11 HAVANA gene 8548 17353 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA11 HAVANA mRNA 8548 17353 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA11 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA11^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA11 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA11^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA11^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA12 HAVANA gene 8544 16436 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA12 HAVANA mRNA 8544 16436 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA12 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA12^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA12 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA12^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA12^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA8 HAVANA gene 11020 20200 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA8 HAVANA mRNA 11020 20200 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA8 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA8^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA8 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA8^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA8^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA9 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA9^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA9 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA9^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA9^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA9 HAVANA gene 8565 16292 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA9 HAVANA mRNA 8565 16292 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB6 HAVANA gene 8726 18325 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGB6 HAVANA mRNA 8726 18325 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB6 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB6^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGB6 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB6^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB6^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB7 HAVANA gene 8576 16505 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGB7 HAVANA mRNA 8576 16505 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB7 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB7^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGB7 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB7^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB7^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC3 HAVANA gene 8563 18749 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC3 HAVANA mRNA 8563 18749 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC3 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC3^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC3 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC3^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC3^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC4 HAVANA gene 8721 16517 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC4 HAVANA mRNA 8721 16517 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC4 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC4^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC4 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC4^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC4^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC5 HAVANA gene 8544 16569 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC5 HAVANA mRNA 8544 16569 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC5 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC5^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC5 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC5^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC5^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA10 HAVANA gene 9840 19293 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA10 HAVANA mRNA 9840 19293 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA6--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA10 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA10 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA10^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA11 HAVANA gene 9655 18460 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA11 HAVANA mRNA 9655 18460 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA6--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA11 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA11 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA11^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA12 HAVANA gene 9651 17543 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA12 HAVANA mRNA 9651 17543 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA6--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA12 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA12 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA12^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA8 HAVANA gene 12127 21307 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA8 HAVANA mRNA 12127 21307 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA6--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA8 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA8 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA8^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA9 HAVANA gene 9672 17399 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA9 HAVANA mRNA 9672 17399 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA6--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA9 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA9 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA9^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB6 HAVANA gene 9833 19432 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGB6 HAVANA mRNA 9833 19432 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA6--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB6 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGB6 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB6^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB7 HAVANA gene 9683 17612 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGB7 HAVANA mRNA 9683 17612 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA6--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB7 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGB7 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB7^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC3 HAVANA gene 9670 19856 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC3 HAVANA mRNA 9670 19856 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA6--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC3 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC3 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC3^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC4 HAVANA gene 9828 17624 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC4 HAVANA mRNA 9828 17624 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA6--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC4 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC4 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC4^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC5 HAVANA gene 9651 17676 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC5 HAVANA mRNA 9651 17676 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA6--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC5 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC5 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC5^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^ENST00000465254.2" ; Parent "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^ENST00000465909.2" ; Parent "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
STAT6--NAB2 HAVANA gene 21100 26679 . + . FI_gene_label "NAB2^ENSG00000166886.13" ; ID "STAT6--NAB2^NAB2^ENSG00000166886.13" ; ccdsid "CCDS8930.1" ; exon_id "ENSE00001107435.6" ; exon_number 1 ; gene_id "STAT6--NAB2^NAB2^ENSG00000166886.13" ; gene_name NAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171192.2" ; havana_transcript "OTTHUMT00000412222.2" ; hgnc_id "HGNC:7627" ; level 2 ; orig_coord_info "chr12,57089272,57089354,+" ; protein_id "ENSP00000300131.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "STAT6--NAB2^ENST00000300131.8" ; transcript_name "NAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
STAT6--NAB2 HAVANA mRNA 21100 26679 . + . FI_gene_label "NAB2^ENSG00000166886.13" ; ID "STAT6--NAB2^ENST00000300131.8" ; Parent "STAT6--NAB2^NAB2^ENSG00000166886.13" ; ccdsid "CCDS8930.1" ; exon_id "ENSE00001107435.6" ; exon_number 1 ; gene_id "STAT6--NAB2^NAB2^ENSG00000166886.13" ; gene_name NAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171192.2" ; havana_transcript "OTTHUMT00000412222.2" ; hgnc_id "HGNC:7627" ; level 2 ; orig_coord_info "chr12,57089272,57089354,+" ; protein_id "ENSP00000300131.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "STAT6--NAB2^ENST00000300131.8" ; transcript_name "NAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STAT6--NAB2 HAVANA gene 3319 18028 . + . FI_gene_label "STAT6^ENSG00000166888.12" ; ID "STAT6--NAB2^STAT6^ENSG00000166888.12" ; ccdsid "CCDS8931.1" ; exon_id "ENSE00003275456.1" ; exon_number 2 ; gene_id "STAT6--NAB2^STAT6^ENSG00000166888.12" ; gene_name STAT6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171194.8" ; havana_transcript "OTTHUMT00000412248.4" ; hgnc_id "HGNC:11368" ; level 2 ; orig_coord_info "chr12,57108163,57108278,-" ; protein_id "ENSP00000300134.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "STAT6--NAB2^ENST00000300134.8" ; transcript_name "STAT6-201" ; transcript_support_level 1 ; transcript_type protein_coding
STAT6--NAB2 HAVANA mRNA 3319 18028 . + . FI_gene_label "STAT6^ENSG00000166888.12" ; ID "STAT6--NAB2^ENST00000300134.8" ; Parent "STAT6--NAB2^STAT6^ENSG00000166888.12" ; ccdsid "CCDS8931.1" ; exon_id "ENSE00003275456.1" ; exon_number 2 ; gene_id "STAT6--NAB2^STAT6^ENSG00000166888.12" ; gene_name STAT6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171194.8" ; havana_transcript "OTTHUMT00000412248.4" ; hgnc_id "HGNC:11368" ; level 2 ; orig_coord_info "chr12,57108163,57108278,-" ; protein_id "ENSP00000300134.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "STAT6--NAB2^ENST00000300134.8" ; transcript_name "STAT6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM14B--FER1L5 HAVANA gene 1053 6878 . + . FI_gene_label "TMEM14B^ENSG00000137210.14" ; ID "TMEM14B--FER1L5^TMEM14B^ENSG00000137210.14" ; ccdsid "CCDS47372.1" ; exon_id "ENSE00003694960.1" ; exon_number 2 ; gene_id "TMEM14B--FER1L5^TMEM14B^ENSG00000137210.14" ; gene_name TMEM14B ; gene_type protein_coding ; havana_gene "OTTHUMG00000014246.4" ; havana_transcript "OTTHUMT00000039839.2" ; hgnc_id "HGNC:21384" ; level 2 ; orig_coord_info "chr6,10749246,10749268,+" ; protein_id "ENSP00000368845.3" ; tag basic CCDS ; transcript_id "TMEM14B--FER1L5^ENST00000379530.7" ; transcript_name "TMEM14B-201" ; transcript_support_level 2 ; transcript_type protein_coding
TMEM14B--FER1L5 HAVANA mRNA 1053 6878 . + . FI_gene_label "TMEM14B^ENSG00000137210.14" ; ID "TMEM14B--FER1L5^ENST00000379530.7" ; Parent "TMEM14B--FER1L5^TMEM14B^ENSG00000137210.14" ; ccdsid "CCDS47372.1" ; exon_id "ENSE00003694960.1" ; exon_number 2 ; gene_id "TMEM14B--FER1L5^TMEM14B^ENSG00000137210.14" ; gene_name TMEM14B ; gene_type protein_coding ; havana_gene "OTTHUMG00000014246.4" ; havana_transcript "OTTHUMT00000039839.2" ; hgnc_id "HGNC:21384" ; level 2 ; orig_coord_info "chr6,10749246,10749268,+" ; protein_id "ENSP00000368845.3" ; tag basic CCDS ; transcript_id "TMEM14B--FER1L5^ENST00000379530.7" ; transcript_name "TMEM14B-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TMEM14B--FER1L5 ENSEMBL gene 21347 56845 . + . FI_gene_label "FER1L5^ENSG00000249715.13" ; ID "TMEM14B--FER1L5^FER1L5^ENSG00000249715.13" ; exon_id "ENSE00003755032.1" ; exon_number 1 ; gene_id "TMEM14B--FER1L5^FER1L5^ENSG00000249715.13" ; gene_name FER1L5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154929.10" ; hgnc_id "HGNC:19044" ; level 3 ; orig_coord_info "chr2,96642837,96642921,+" ; protein_id "ENSP00000493220.1" ; tag basic appris_alternative_2 ; transcript_id "TMEM14B--FER1L5^ENST00000623019.5" ; transcript_name "FER1L5-203" ; transcript_support_level NA ; transcript_type protein_coding
TMEM14B--FER1L5 ENSEMBL mRNA 21347 56845 . + . FI_gene_label "FER1L5^ENSG00000249715.13" ; ID "TMEM14B--FER1L5^ENST00000623019.5" ; Parent "TMEM14B--FER1L5^FER1L5^ENSG00000249715.13" ; exon_id "ENSE00003755032.1" ; exon_number 1 ; gene_id "TMEM14B--FER1L5^FER1L5^ENSG00000249715.13" ; gene_name FER1L5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154929.10" ; hgnc_id "HGNC:19044" ; level 3 ; orig_coord_info "chr2,96642837,96642921,+" ; protein_id "ENSP00000493220.1" ; tag basic appris_alternative_2 ; transcript_id "TMEM14B--FER1L5^ENST00000623019.5" ; transcript_name "FER1L5-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
XACT--LRRTM4 HAVANA gene 357561 362466 . + . FI_gene_label "LRRTM4^ENSG00000176204.14" ; ID "XACT--LRRTM4^LRRTM4^ENSG00000176204.14" ; ccdsid "CCDS46347.1" ; exon_id "ENSE00001585504.1" ; exon_number 2 ; gene_id "XACT--LRRTM4^LRRTM4^ENSG00000176204.14" ; gene_name LRRTM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152842.3" ; havana_transcript "OTTHUMT00000328226.1" ; hgnc_id "HGNC:19411" ; level 2 ; orig_coord_info "chr2,77521668,77521671,-" ; protein_id "ENSP00000386236.3" ; tag basic CCDS ; transcript_id "XACT--LRRTM4^ENST00000409088.3" ; transcript_name "LRRTM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
XACT--LRRTM4 HAVANA mRNA 357561 362466 . + . FI_gene_label "LRRTM4^ENSG00000176204.14" ; ID "XACT--LRRTM4^ENST00000409088.3" ; Parent "XACT--LRRTM4^LRRTM4^ENSG00000176204.14" ; ccdsid "CCDS46347.1" ; exon_id "ENSE00001585504.1" ; exon_number 2 ; gene_id "XACT--LRRTM4^LRRTM4^ENSG00000176204.14" ; gene_name LRRTM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152842.3" ; havana_transcript "OTTHUMT00000328226.1" ; hgnc_id "HGNC:19411" ; level 2 ; orig_coord_info "chr2,77521668,77521671,-" ; protein_id "ENSP00000386236.3" ; tag basic CCDS ; transcript_id "XACT--LRRTM4^ENST00000409088.3" ; transcript_name "LRRTM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AL591378.1--DMD HAVANA gene 1001 5809 . + . FI_gene_label "AL591378.1^ENSG00000287700.1" ; ID "AL591378.1--DMD^AL591378.1^ENSG00000287700.1" ; exon_id "ENSE00003871972.1" ; exon_number 1 ; gene_id "AL591378.1--DMD^AL591378.1^ENSG00000287700.1" ; gene_name "AL591378.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194685.1" ; havana_transcript "OTTHUMT00000520718.1" ; level 2 ; orig_coord_info "chrX,33725628,33726013,-" ; tag basic TAGENE ; transcript_id "AL591378.1--DMD^ENST00000653485.1" ; transcript_name "AL591378.1-201" ; transcript_type lncRNA
AL591378.1--DMD HAVANA RNA 1001 5809 . + . FI_gene_label "AL591378.1^ENSG00000287700.1" ; ID "AL591378.1--DMD^ENST00000653485.1" ; Parent "AL591378.1--DMD^AL591378.1^ENSG00000287700.1" ; exon_id "ENSE00003871972.1" ; exon_number 1 ; gene_id "AL591378.1--DMD^AL591378.1^ENSG00000287700.1" ; gene_name "AL591378.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194685.1" ; havana_transcript "OTTHUMT00000520718.1" ; level 2 ; orig_coord_info "chrX,33725628,33726013,-" ; tag basic TAGENE ; transcript_id "AL591378.1--DMD^ENST00000653485.1" ; transcript_name "AL591378.1-201" ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
XACT--LRRTM4 HAVANA gene 1169 351964 . + . FI_gene_label "XACT^ENSG00000241743.4" ; ID "XACT--LRRTM4^XACT^ENSG00000241743.4" ; exon_id "ENSE00003840795.1" ; exon_number 1 ; gene_id "XACT--LRRTM4^XACT^ENSG00000241743.4" ; gene_name XACT ; gene_type lncRNA ; havana_gene "OTTHUMG00000022220.5" ; havana_transcript "OTTHUMT00000057955.4" ; hgnc_id "HGNC:45056" ; level 2 ; orig_coord_info "chrX,114059004,114059121,-" ; tag CAGE_supported_TSS basic ; transcript_id "XACT--LRRTM4^ENST00000468762.3" ; transcript_name "XACT-201" ; transcript_support_level 5 ; transcript_type lncRNA
XACT--LRRTM4 HAVANA RNA 1169 351964 . + . FI_gene_label "XACT^ENSG00000241743.4" ; ID "XACT--LRRTM4^ENST00000468762.3" ; Parent "XACT--LRRTM4^XACT^ENSG00000241743.4" ; exon_id "ENSE00003840795.1" ; exon_number 1 ; gene_id "XACT--LRRTM4^XACT^ENSG00000241743.4" ; gene_name XACT ; gene_type lncRNA ; havana_gene "OTTHUMG00000022220.5" ; havana_transcript "OTTHUMT00000057955.4" ; hgnc_id "HGNC:45056" ; level 2 ; orig_coord_info "chrX,114059004,114059121,-" ; tag CAGE_supported_TSS basic ; transcript_id "XACT--LRRTM4^ENST00000468762.3" ; transcript_name "XACT-201" ; transcript_support_level 5 ; transcript_type lncRNA
312 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
647 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 35 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed