File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/26eb06ddc547034889784e041d98ea/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (659_bTq-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/a8f423cd0598e330d4644de70efac3/659_bTq-T1-TRNA-1_B23MHV2LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/b91a6a707fd14436ee0e9e9f428937/659_bTq-T1-TRNA-1_B23MHV2LT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/26eb06ddc547034889784e041d98ea/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/26eb06ddc547034889784e041d98ea/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_bTq-T1-TRNA-1_B23MHV2LT4_1/abundance.h5
Successfully converted 659_bTq-T1-TRNA-1_B23MHV2LT4_1/abundance.h5 to 659_bTq-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv
  Sample: 659_bTq-T1-TRNA-1_B23MHV2LT4_1
  Mean Fragment Length: 146.6 bp
  Median Fragment Length: 129.0 bp
  pct_mito_est_counts: 0.033%
  pct_ribo_est_counts: 1.572%
  pct_hk_est_counts: 0.584%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.078%
  pct_ribo_tpm: 4.705%
  pct_hk_tpm: 0.872%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.016%