File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/4745d594705f5da09f0c0946854ba5/.command.log
Size
9.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bTq-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/0c66c7b0cb0767e53cfd84f14fcc6b/659_bTq-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/4745d594705f5da09f0c0946854ba5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/4745d594705f5da09f0c0946854ba5/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/c0424493f1236c20833187f5d61d82/659_bTq-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
BIRC6--LINC01320
starfusion
arriba
PTPRK--RSPO3
starfusion
arriba
WASH3P--FOCAD
starfusion
arriba
BCL7C--NBEA
starfusion
arriba
LINC02609--GABBR2
starfusion
arriba
NR6A1--PSMB7
starfusion
TLK2P1--AC110079.1
starfusion
GOLGA6L10--GOLGA2P6
starfusion
TUBB4B--RNU5A-1
starfusion
AC138409.2--NAIP
starfusion
MIR4713HG--GLDN
starfusion
PMS2P6--CCDC146
starfusion
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PTPRK--AL356534.1
arriba
SAMD13--NFU1P2
arriba
SAMD13--LINC01776
arriba
TVP23C--CDRT4
arriba
CDH13--HS3ST4
arriba
CDH13--AC009158.1
arriba
TTLL11--TTLL11
arriba
MB21D2--TPRG1
arriba
RFC3--FNDC3A
arriba
AL669831.4--SEPTIN14
arriba
TTLL11--AL353742.1
arriba
TTLL11--AL669983.1
arriba
AC015911.9--SLFN12L
arriba
ZMAT3--MECOM
arriba
RFC3--MLNR
arriba
AL137000.1--NBEA
arriba
CDADC1--NBEA
arriba
CRYZL2P--SEC16B
arriba
KLRC4--KLRK1
arriba
DDX55--MIR3908
arriba
DDX55--TMED2-DT
arriba
MECOM--CACNA1B
arriba
MB21D2--TP63
arriba

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Processing BIRC6--LINC01320:   0%|          | 0/45 [00:00<?, ?it/s]
Processing BIRC6--LINC01320:   2%|▏         | 1/45 [00:00<00:04,  9.24it/s]
Processing PTPRK--RSPO3:   2%|▏         | 1/45 [00:00<00:04,  9.24it/s]    
Processing PTPRK--RSPO3:   4%|▍         | 2/45 [00:00<00:04,  9.47it/s]
Processing WASH3P--FOCAD:   4%|▍         | 2/45 [00:00<00:04,  9.47it/s]
Processing WASH3P--FOCAD:   7%|▋         | 3/45 [00:00<00:04,  9.55it/s]
Processing BCL7C--NBEA:   7%|▋         | 3/45 [00:00<00:04,  9.55it/s]  
Processing BCL7C--NBEA:   9%|▉         | 4/45 [00:00<00:04,  9.59it/s]
Processing LINC02609--GABBR2:   9%|▉         | 4/45 [00:00<00:04,  9.59it/s]
Processing LINC02609--GABBR2:  11%|█         | 5/45 [00:00<00:04,  9.61it/s]
Processing NR6A1--PSMB7:  11%|█         | 5/45 [00:00<00:04,  9.61it/s]     
Processing NR6A1--PSMB7:  13%|█▎        | 6/45 [00:00<00:04,  9.63it/s]
Processing TLK2P1--AC110079.1:  13%|█▎        | 6/45 [00:00<00:04,  9.63it/s]
Processing TLK2P1--AC110079.1:  16%|█▌        | 7/45 [00:00<00:03,  9.64it/s]
Processing GOLGA6L10--GOLGA2P6:  16%|█▌        | 7/45 [00:00<00:03,  9.64it/s]
Processing GOLGA6L10--GOLGA2P6:  18%|█▊        | 8/45 [00:00<00:03,  9.64it/s]
Processing TUBB4B--RNU5A-1:  18%|█▊        | 8/45 [00:00<00:03,  9.64it/s]    
Processing TUBB4B--RNU5A-1:  20%|██        | 9/45 [00:00<00:03,  9.65it/s]
Processing AC138409.2--NAIP:  20%|██        | 9/45 [00:00<00:03,  9.65it/s]
Processing AC138409.2--NAIP:  22%|██▏       | 10/45 [00:01<00:03,  9.65it/s]
Processing MIR4713HG--GLDN:  22%|██▏       | 10/45 [00:01<00:03,  9.65it/s] 
Processing MIR4713HG--GLDN:  24%|██▍       | 11/45 [00:01<00:03,  9.65it/s]
Processing PMS2P6--CCDC146:  24%|██▍       | 11/45 [00:01<00:03,  9.65it/s]
Processing PMS2P6--CCDC146:  27%|██▋       | 12/45 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  27%|██▋       | 12/45 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  29%|██▉       | 13/45 [00:01<00:03,  9.66it/s]
Processing PCDHGB2--PCDHGC5:  29%|██▉       | 13/45 [00:01<00:03,  9.66it/s]
Processing PCDHGB2--PCDHGC5:  31%|███       | 14/45 [00:01<00:03,  9.66it/s]
Processing PCDHGB2--PCDHGA8:  31%|███       | 14/45 [00:01<00:03,  9.66it/s]
Processing PCDHGB2--PCDHGA8:  33%|███▎      | 15/45 [00:01<00:03,  9.66it/s]
Processing PCDHGB2--PCDHGC3:  33%|███▎      | 15/45 [00:01<00:03,  9.66it/s]
Processing PCDHGB2--PCDHGC3:  36%|███▌      | 16/45 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  36%|███▌      | 16/45 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  38%|███▊      | 17/45 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  38%|███▊      | 17/45 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  40%|████      | 18/45 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  40%|████      | 18/45 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  42%|████▏     | 19/45 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  42%|████▏     | 19/45 [00:01<00:02,  9.64it/s] 
Processing PCDHGB2--PCDHGA9:  44%|████▍     | 20/45 [00:02<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGB7:  44%|████▍     | 20/45 [00:02<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGB7:  47%|████▋     | 21/45 [00:02<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGA12:  47%|████▋     | 21/45 [00:02<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGA12:  49%|████▉     | 22/45 [00:02<00:02,  9.61it/s]
Processing PTPRK--AL356534.1:  49%|████▉     | 22/45 [00:02<00:02,  9.61it/s]
Processing PTPRK--AL356534.1:  51%|█████     | 23/45 [00:02<00:02,  9.61it/s]
Processing SAMD13--NFU1P2:  51%|█████     | 23/45 [00:02<00:02,  9.61it/s]   
Processing SAMD13--NFU1P2:  53%|█████▎    | 24/45 [00:02<00:02,  9.61it/s]
Processing SAMD13--LINC01776:  53%|█████▎    | 24/45 [00:02<00:02,  9.61it/s]
Processing SAMD13--LINC01776:  56%|█████▌    | 25/45 [00:02<00:02,  9.62it/s]
Processing TVP23C--CDRT4:  56%|█████▌    | 25/45 [00:02<00:02,  9.62it/s]    
Processing TVP23C--CDRT4:  58%|█████▊    | 26/45 [00:02<00:01,  9.63it/s]
Processing CDH13--HS3ST4:  58%|█████▊    | 26/45 [00:02<00:01,  9.63it/s]
Processing CDH13--HS3ST4:  60%|██████    | 27/45 [00:02<00:01,  9.64it/s]
Processing CDH13--AC009158.1:  60%|██████    | 27/45 [00:02<00:01,  9.64it/s]
Processing CDH13--AC009158.1:  62%|██████▏   | 28/45 [00:02<00:01,  9.64it/s]
Processing TTLL11--TTLL11:  62%|██████▏   | 28/45 [00:02<00:01,  9.64it/s]   
Processing TTLL11--TTLL11:  64%|██████▍   | 29/45 [00:03<00:01,  9.65it/s]
Processing MB21D2--TPRG1:  64%|██████▍   | 29/45 [00:03<00:01,  9.65it/s] 
Processing MB21D2--TPRG1:  67%|██████▋   | 30/45 [00:03<00:01,  9.65it/s]
Processing RFC3--FNDC3A:  67%|██████▋   | 30/45 [00:03<00:01,  9.65it/s] 
Processing RFC3--FNDC3A:  69%|██████▉   | 31/45 [00:03<00:01,  9.65it/s]
Processing AL669831.4--SEPTIN14:  69%|██████▉   | 31/45 [00:03<00:01,  9.65it/s]
Processing AL669831.4--SEPTIN14:  71%|███████   | 32/45 [00:03<00:01,  9.65it/s]
Processing TTLL11--AL353742.1:  71%|███████   | 32/45 [00:03<00:01,  9.65it/s]  
Processing TTLL11--AL353742.1:  73%|███████▎  | 33/45 [00:03<00:01,  9.65it/s]
Processing TTLL11--AL669983.1:  73%|███████▎  | 33/45 [00:03<00:01,  9.65it/s]
Processing TTLL11--AL669983.1:  76%|███████▌  | 34/45 [00:03<00:01,  9.65it/s]
Processing AC015911.9--SLFN12L:  76%|███████▌  | 34/45 [00:03<00:01,  9.65it/s]
Processing AC015911.9--SLFN12L:  78%|███████▊  | 35/45 [00:03<00:01,  9.65it/s]
Processing ZMAT3--MECOM:  78%|███████▊  | 35/45 [00:03<00:01,  9.65it/s]       
Processing ZMAT3--MECOM:  80%|████████  | 36/45 [00:03<00:00,  9.65it/s]
Processing RFC3--MLNR:  80%|████████  | 36/45 [00:03<00:00,  9.65it/s]  
Processing RFC3--MLNR:  82%|████████▏ | 37/45 [00:03<00:00,  9.65it/s]
Processing AL137000.1--NBEA:  82%|████████▏ | 37/45 [00:03<00:00,  9.65it/s]
Processing AL137000.1--NBEA:  84%|████████▍ | 38/45 [00:03<00:00,  9.65it/s]
Processing CDADC1--NBEA:  84%|████████▍ | 38/45 [00:03<00:00,  9.65it/s]    
Processing CDADC1--NBEA:  87%|████████▋ | 39/45 [00:04<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  87%|████████▋ | 39/45 [00:04<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  89%|████████▉ | 40/45 [00:04<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  89%|████████▉ | 40/45 [00:04<00:00,  9.65it/s]   
Processing KLRC4--KLRK1:  91%|█████████ | 41/45 [00:04<00:00,  9.65it/s]
Processing DDX55--MIR3908:  91%|█████████ | 41/45 [00:04<00:00,  9.65it/s]
Processing DDX55--MIR3908:  93%|█████████▎| 42/45 [00:04<00:00,  9.66it/s]
Processing DDX55--TMED2-DT:  93%|█████████▎| 42/45 [00:04<00:00,  9.66it/s]
Processing DDX55--TMED2-DT:  96%|█████████▌| 43/45 [00:04<00:00,  9.65it/s]
Processing MECOM--CACNA1B:  96%|█████████▌| 43/45 [00:04<00:00,  9.65it/s] 
Processing MECOM--CACNA1B:  98%|█████████▊| 44/45 [00:04<00:00,  9.66it/s]
Processing MB21D2--TP63:  98%|█████████▊| 44/45 [00:04<00:00,  9.66it/s]  
Processing MB21D2--TP63: 100%|██████████| 45/45 [00:04<00:00,  9.66it/s]
Processing MB21D2--TP63: 100%|██████████| 45/45 [00:04<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory